RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 RBSNQ9H1K0 784 aa12.97□□□□□ -0.33
PRPF40A-211ENST00000493468 SNX15Q9NRS6 342 aa12.97□□□□□ -0.33
PRPF40A-211ENST00000493468 ZNF701Q9NV72 531 aaPredicted RBP12.97□□□□□ -0.33
PRPF40A-211ENST00000493468 CLCF1Q9UBD9 225 aa12.97□□□□□ -0.33
PRPF40A-211ENST00000493468 ZNF490Q9ULM2 529 aaPredicted RBP12.97□□□□□ -0.33
PRPF40A-211ENST00000493468 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.96□□□□□ -0.33
PRPF40A-211ENST00000493468 NPEPPSL1A6NEC2 478 aa12.96□□□□□ -0.33
PRPF40A-211ENST00000493468 CDC7O00311 574 aa12.96□□□□□ -0.33
PRPF40A-211ENST00000493468 TNFSF13O75888 250 aa12.96□□□□□ -0.33
PRPF40A-211ENST00000493468 ALOX15P16050 662 aaPredicted RBP12.96□□□□□ -0.33
PRPF40A-211ENST00000493468 CPN2P22792 545 aa12.96□□□□□ -0.33
PRPF40A-211ENST00000493468 PTPN6P29350 595 aa12.96□□□□□ -0.33
PRPF40A-211ENST00000493468 GALNSP34059 522 aa12.96□□□□□ -0.33
PRPF40A-211ENST00000493468 CPOXP36551 454 aa12.96□□□□□ -0.33
PRPF40A-211ENST00000493468 CASP3P42574 277 aa12.96□□□□□ -0.33
PRPF40A-211ENST00000493468 GDF5P43026 501 aa12.96□□□□□ -0.33
PRPF40A-211ENST00000493468 PGGT1BP53609 377 aa12.96□□□□□ -0.33
PRPF40A-211ENST00000493468 FBXW4P57775 412 aa12.96□□□□□ -0.33
PRPF40A-211ENST00000493468 HERVK_113P63132 956 aa12.96□□□□□ -0.33
PRPF40A-211ENST00000493468 ERVK-8P63133 956 aa12.96□□□□□ -0.33
PRPF40A-211ENST00000493468 CAPRIN1Q14444 709 aaKnown RBP12.96□□□□□ -0.33
PRPF40A-211ENST00000493468 TMEM35AQ53FP2 167 aa12.96□□□□□ -0.33
PRPF40A-211ENST00000493468 BICRALQ6AI39 1079 aa12.96□□□□□ -0.33
PRPF40A-211ENST00000493468 TIGD3Q6B0B8 471 aa12.96□□□□□ -0.33
PRPF40A-211ENST00000493468 TMEM81Q6P7N7 255 aa12.96□□□□□ -0.33
PRPF40A-211ENST00000493468 ADAMTSL2Q86TH1 951 aa12.96□□□□□ -0.33
PRPF40A-211ENST00000493468 NKAPQ8N5F7 415 aaKnown RBP12.96□□□□□ -0.33
PRPF40A-211ENST00000493468 NAT8LQ8N9F0 302 aa12.96□□□□□ -0.33
PRPF40A-211ENST00000493468 FAM83FQ8NEG4 500 aaPredicted RBP12.96□□□□□ -0.33
PRPF40A-211ENST00000493468 TANKQ92844 425 aa12.96□□□□□ -0.33
PRPF40A-211ENST00000493468 PPWD1Q96BP3 646 aaKnown RBP12.96□□□□□ -0.33
PRPF40A-211ENST00000493468 RHBDF1Q96CC6 855 aa12.96□□□□□ -0.33
PRPF40A-211ENST00000493468 PTCD3Q96EY7 689 aaKnown RBP12.96□□□□□ -0.33
PRPF40A-211ENST00000493468 VPS39Q96JC1 886 aa12.96□□□□□ -0.33
PRPF40A-211ENST00000493468 EFCAB11Q9BUY7 163 aa12.96□□□□□ -0.33
PRPF40A-211ENST00000493468 ERVK-6Q9BXR3 956 aa12.96□□□□□ -0.33
PRPF40A-211ENST00000493468 MS4A8Q9BY19 250 aa12.96□□□□□ -0.33
PRPF40A-211ENST00000493468 RPF2Q9H7B2 306 aaKnown RBP12.96□□□□□ -0.33
PRPF40A-211ENST00000493468 TEX10Q9NXF1 929 aaPredicted RBP12.96□□□□□ -0.33
PRPF40A-211ENST00000493468 MS4A12Q9NXJ0 267 aa12.96□□□□□ -0.33
PRPF40A-211ENST00000493468 ERVK-19Q9WJR5 959 aa12.96□□□□□ -0.33
PRPF40A-211ENST00000493468 H0Y3Z8 333 aa12.95□□□□□ -0.34
PRPF40A-211ENST00000493468 PRAMEF4O60810 478 aa12.95□□□□□ -0.34
PRPF40A-211ENST00000493468 CLPSP04118 112 aa12.95□□□□□ -0.34
PRPF40A-211ENST00000493468 CRHP06850 196 aa12.95□□□□□ -0.34
PRPF40A-211ENST00000493468 PTMSP20962 102 aa12.95□□□□□ -0.34
PRPF40A-211ENST00000493468 LOXP28300 417 aaPredicted RBP12.95□□□□□ -0.34
PRPF40A-211ENST00000493468 CD79BP40259 229 aa12.95□□□□□ -0.34
PRPF40A-211ENST00000493468 TOMM20Q15388 145 aa12.95□□□□□ -0.34
PRPF40A-211ENST00000493468 SPANXN3Q5MJ09 141 aa12.95□□□□□ -0.34
PRPF40A-211ENST00000493468 PRAMEF9Q5VWM5 478 aa12.95□□□□□ -0.34
PRPF40A-211ENST00000493468 ENPP6Q6UWR7 440 aa12.95□□□□□ -0.34
PRPF40A-211ENST00000493468 PLEKHM3Q6ZWE6 761 aa12.95□□□□□ -0.34
PRPF40A-211ENST00000493468 OR4N5Q8IXE1 308 aa12.95□□□□□ -0.34
PRPF40A-211ENST00000493468 GCNT2Q8N0V5 402 aa12.95□□□□□ -0.34
PRPF40A-211ENST00000493468 CERS2Q96G23 380 aa12.95□□□□□ -0.34
PRPF40A-211ENST00000493468 NAT9Q9BTE0 207 aa12.95□□□□□ -0.34
PRPF40A-211ENST00000493468 MED18Q9BUE0 208 aa12.95□□□□□ -0.34
PRPF40A-211ENST00000493468 KLHL28Q9NXS3 571 aa12.95□□□□□ -0.34
PRPF40A-211ENST00000493468 C2orf92A0A1B0GVN3 265 aa12.94□□□□□ -0.34
PRPF40A-211ENST00000493468 A0A1W2PNV4 684 aa12.94□□□□□ -0.34
PRPF40A-211ENST00000493468 CLGNO14967 610 aa12.94□□□□□ -0.34
PRPF40A-211ENST00000493468 TLX2O43763 284 aaPredicted RBP12.94□□□□□ -0.34
PRPF40A-211ENST00000493468 RHOXF2BP0C7M4 288 aa12.94□□□□□ -0.34
PRPF40A-211ENST00000493468 CD22P20273 847 aa12.94□□□□□ -0.34
PRPF40A-211ENST00000493468 CCKARP32238 428 aa12.94□□□□□ -0.34
PRPF40A-211ENST00000493468 GGT5P36269 586 aa12.94□□□□□ -0.34
PRPF40A-211ENST00000493468 TNFRSF17Q02223 184 aa12.94□□□□□ -0.34
PRPF40A-211ENST00000493468 PCDH1Q08174 1060 aa12.94□□□□□ -0.34
PRPF40A-211ENST00000493468 FAM27E3Q08E93 113 aa12.94□□□□□ -0.34
PRPF40A-211ENST00000493468 LAPTM5Q13571 262 aa12.94□□□□□ -0.34
PRPF40A-211ENST00000493468 E2F2Q14209 437 aa12.94□□□□□ -0.34
PRPF40A-211ENST00000493468 AP5B1Q2VPB7 878 aa12.94□□□□□ -0.34
PRPF40A-211ENST00000493468 C18orf21Q32NC0 220 aaPredicted RBP12.94□□□□□ -0.34
PRPF40A-211ENST00000493468 PAGE2BQ5JRK9 111 aa12.94□□□□□ -0.34
PRPF40A-211ENST00000493468 TEDDM1Q5T9Z0 273 aa12.94□□□□□ -0.34
PRPF40A-211ENST00000493468 FRA10AC1Q70Z53 315 aa12.94□□□□□ -0.34
PRPF40A-211ENST00000493468 HIPK1Q86Z02 1210 aa12.94□□□□□ -0.34
PRPF40A-211ENST00000493468 TCAIMQ8N3R3 496 aa12.94□□□□□ -0.34
PRPF40A-211ENST00000493468 OR1J4Q8NGS1 313 aa12.94□□□□□ -0.34
PRPF40A-211ENST00000493468 TMEM171Q8WVE6 324 aa12.94□□□□□ -0.34
PRPF40A-211ENST00000493468 CAVIN3Q969G5 261 aa12.94□□□□□ -0.34
PRPF40A-211ENST00000493468 CTHRC1Q96CG8 243 aa12.94□□□□□ -0.34
PRPF40A-211ENST00000493468 HS3ST6Q96QI5 342 aa12.94□□□□□ -0.34
PRPF40A-211ENST00000493468 G6PC3Q9BUM1 346 aa12.94□□□□□ -0.34
PRPF40A-211ENST00000493468 PHACTR1Q9C0D0 580 aa12.94□□□□□ -0.34
PRPF40A-211ENST00000493468 OR2B2Q9GZK3 357 aa12.94□□□□□ -0.34
PRPF40A-211ENST00000493468 CXorf56Q9H5V9 222 aa12.94□□□□□ -0.34
PRPF40A-211ENST00000493468 CNOT10Q9H9A5 744 aaKnown RBP12.94□□□□□ -0.34
PRPF40A-211ENST00000493468 DNAJC11Q9NVH1 559 aa12.94□□□□□ -0.34
PRPF40A-211ENST00000493468 WWOXQ9NZC7 414 aa12.94□□□□□ -0.34
PRPF40A-211ENST00000493468 ADGRE2Q9UHX3 823 aa12.94□□□□□ -0.34
PRPF40A-211ENST00000493468 RTCAO00442 366 aaKnown RBP12.93□□□□□ -0.34
PRPF40A-211ENST00000493468 HCRTR2O43614 444 aa12.93□□□□□ -0.34
PRPF40A-211ENST00000493468 SERPINB1P30740 379 aa12.93□□□□□ -0.34
PRPF40A-211ENST00000493468 UGT2B10P36537 528 aa12.93□□□□□ -0.34
PRPF40A-211ENST00000493468 SSR2P43308 183 aa12.93□□□□□ -0.34
PRPF40A-211ENST00000493468 NRG3P56975 720 aa12.93□□□□□ -0.34
PRPF40A-211ENST00000493468 TNK1Q13470 666 aa12.93□□□□□ -0.34
PRPF40A-211ENST00000493468 DOC2AQ14183 400 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms