RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 MS4A2Q01362 244 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 PRKCEQ02156 737 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 ACY1Q03154 408 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 SMARCB1Q12824 385 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 DRP2Q13474 957 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 NFE2L1Q14494 772 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 SQLEQ14534 574 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 RFTN1Q14699 578 aaPredicted RBP1.89□□□□□ -2.11
HMGB1-208ENST00000490788 WDR43Q15061 677 aaKnown RBP eCLIP1.89□□□□□ -2.11
HMGB1-208ENST00000490788 NDUFA5Q16718 116 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 PHKG1Q16816 387 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 WSCD2Q2TBF2 565 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 CNPY1Q3B7I2 92 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 KRT71Q3SY84 523 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 PHLDA2Q53GA4 152 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 PDLIM3Q53GG5 364 aaPredicted RBP1.89□□□□□ -2.11
HMGB1-208ENST00000490788 FASTKD1Q53R41 847 aaKnown RBP1.89□□□□□ -2.11
HMGB1-208ENST00000490788 SYT14P1Q58G82 188 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 BMP2KLQ5H9B9 411 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 TCTE1Q5JU00 501 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 SLC35D3Q5M8T2 416 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 CCDC183Q5T5S1 534 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 C6orf163Q5TEZ5 329 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 LYSMD4Q5XG99 296 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 KRT39Q6A163 491 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 GPR139Q6DWJ6 353 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 CTRB2Q6GPI1 263 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 OR52E8Q6IFG1 317 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 MFSD12Q6NUT3 480 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 PLBD1Q6P4A8 553 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 SHQ1Q6PI26 577 aaKnown RBP1.89□□□□□ -2.11
HMGB1-208ENST00000490788 C4orf22Q6V702 233 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 PPP1R21Q6ZMI0 780 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 FAM47EQ6ZV65 393 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 CYP4V2Q6ZWL3 525 aaPredicted RBP1.89□□□□□ -2.11
HMGB1-208ENST00000490788 DET1Q7L5Y6 550 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 G2E3Q7L622 706 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 GPR142Q7Z601 462 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 PHLDB2Q86SQ0 1253 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 SLC51BQ86UW2 128 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 NLRP14Q86W24 1093 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 LACC1Q8IV20 430 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 ZNF440Q8IYI8 595 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 MAML2Q8IZL2 1156 aaPredicted RBP1.89□□□□□ -2.11
HMGB1-208ENST00000490788 RYBPQ8N488 228 aaPredicted RBP1.89□□□□□ -2.11
HMGB1-208ENST00000490788 NKAIN3Q8N8D7 197 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 NAT8LQ8N9F0 302 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 ZNF565Q8N9K5 539 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 POMGNT2Q8NAT1 580 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 NOA1Q8NC60 698 aaKnown RBP1.89□□□□□ -2.11
HMGB1-208ENST00000490788 TRPV1Q8NER1 839 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 TTLQ8NG68 377 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 OR11H4Q8NGC9 324 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 OR10S1Q8NGN2 331 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 OR6S1Q8NH40 331 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 OR52N5Q8NH56 324 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 STARD8Q92502 1023 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 DHX58Q96C10 678 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 TMCO6Q96DC7 493 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 SNF8Q96H20 258 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 GCNAQ96QF7 691 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 PLIN2Q99541 437 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 RAD9AQ99638 391 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 OLFM1Q99784 485 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 NKX3-1Q99801 234 aaPredicted RBP1.89□□□□□ -2.11
HMGB1-208ENST00000490788 COQ7Q99807 217 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 VGLL1Q99990 258 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 DESI2Q9BSY9 194 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 SPZ1Q9BXG8 430 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 FGFBP2Q9BYJ0 223 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 SHCBP1LQ9BZQ2 653 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 KRT23Q9C075 422 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 KLHL4Q9C0H6 718 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 UPF3AQ9H1J1 476 aaKnown RBP1.89□□□□□ -2.11
HMGB1-208ENST00000490788 TDRD3Q9H7E2 651 aaKnown RBP1.89□□□□□ -2.11
HMGB1-208ENST00000490788 TRPV4Q9HBA0 871 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 PALMDQ9NP74 551 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 PIH1D3Q9NQM4 214 aaKnown RBP1.89□□□□□ -2.11
HMGB1-208ENST00000490788 SDHAF3Q9NRP4 125 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 ETNK2Q9NVF9 386 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 RMND1Q9NWS8 449 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 TAB2Q9NYJ8 693 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP1.89□□□□□ -2.11
HMGB1-208ENST00000490788 AIPL1Q9NZN9 384 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 TMOD2Q9NZR1 351 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 SENP1Q9P0U3 644 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 CRNNQ9UBG3 495 aaPredicted RBP1.89□□□□□ -2.11
HMGB1-208ENST00000490788 LRWD1Q9UFC0 647 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 TUBE1Q9UJT0 475 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 VANGL2Q9ULK5 521 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 STUB1Q9UNE7 303 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 AGTPBP1Q9UPW5 1226 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 RPH3AQ9Y2J0 694 aaPredicted RBP1.89□□□□□ -2.11
HMGB1-208ENST00000490788 WBP11Q9Y2W2 641 aaKnown RBP1.89□□□□□ -2.11
HMGB1-208ENST00000490788 TDRKHQ9Y2W6 561 aaKnown RBP1.89□□□□□ -2.11
HMGB1-208ENST00000490788 MOB4Q9Y3A3 225 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 MRPL11Q9Y3B7 192 aaKnown RBP1.89□□□□□ -2.11
HMGB1-208ENST00000490788 ANGPTL3Q9Y5C1 460 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 ATP6V1DQ9Y5K8 247 aa1.89□□□□□ -2.11
HMGB1-208ENST00000490788 MMP24Q9Y5R2 645 aa1.89□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms