RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 NINJ2Q9NZG7 142 aa3.88□□□□□ -1.79
HMGB1P38-201ENST00000490557 EIF3KQ9UBQ5 218 aaKnown RBP3.88□□□□□ -1.79
HMGB1P38-201ENST00000490557 EXTL2Q9UBQ6 330 aa3.88□□□□□ -1.79
HMGB1P38-201ENST00000490557 FETUBQ9UGM5 382 aa3.88□□□□□ -1.79
HMGB1P38-201ENST00000490557 MRTO4Q9UKD2 239 aaKnown RBP3.88□□□□□ -1.79
HMGB1P38-201ENST00000490557 ZNF346Q9UL40 294 aaKnown RBP3.88□□□□□ -1.79
HMGB1P38-201ENST00000490557 ATP8B3O60423 1300 aa3.88□□□□□ -1.79
HMGB1P38-201ENST00000490557 TEX48A0A1B0GUV7 120 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 PSMD3O43242 534 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 GPRIN2O60269 458 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 KLHL41O60662 606 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 TRIM16O95361 564 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 FHP07954 510 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 NUDT17P0C025 328 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 OR9G9P0C7N8 305 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 TPBGLP0DKB5 382 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 FOLR2P14207 255 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 GPX3P22352 226 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 OR1D2P34982 312 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 IFNAR2P48551 515 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 RPL34P49207 117 aaKnown RBP3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 GSK3BP49841 420 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 TNFSF10P50591 281 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 ARFIP1P53367 373 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 ITPK1Q13572 414 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 MEF2DQ14814 521 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 C15orf32Q32M92 178 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 SLC25A30Q5SVS4 291 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 CCDC183Q5T5S1 534 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 LIPJQ5W064 366 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 C16orf87Q6PH81 154 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 GVQW1Q8N7I0 195 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 MRPL43Q8N983 215 aaKnown RBP3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 CSNK1G2-AS1Q8NCQ2 148 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 CNNM3Q8NE01 707 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 GMCL1P1Q8NEA9 526 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 KIAA1524Q8TCG1 905 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 CNDP1Q96KN2 507 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 FAM111AQ96PZ2 611 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 RAB40CQ96S21 281 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 AGPAT1Q99943 283 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 HSD17B14Q9BPX1 270 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 NT5DC2Q9H857 520 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 ELL3Q9HB65 397 aaPredicted RBP3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 GDF3Q9NR23 364 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 SLC7A10Q9NS82 523 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 MAD2L2Q9UI95 211 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 APPL1Q9UKG1 709 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 TSPAN16Q9UKR8 245 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 FBXO7Q9Y3I1 522 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 SALL1Q9NSC2 1324 aa3.87□□□□□ -1.79
HMGB1P38-201ENST00000490557 IGHV3-16A0A0C4DH30 117 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 CCDC169A6NNP5 214 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 SRRM4A7MD48 611 aaKnown RBP3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 ZNF724A8MTY0 619 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 FAM25EA8MYX2 175 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 E9PAM4 449 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 H0YC42 278 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 AP3B1O00203 1094 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 CASQ2O14958 399 aaPredicted RBP3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 PHF1O43189 567 aaPredicted RBP3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 ATP6V1G1O75348 118 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 CSDE1O75534 798 aaKnown RBP3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 OR6B1O95007 311 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 CPNE6O95741 557 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 IGHG1P01857 330 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 CT45A8P0DMV1 189 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 CT45A9P0DMV2 189 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 GHRP10912 638 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 PDHBP11177 359 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 MBL2P11226 248 aaPredicted RBP3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 CCNA2P20248 432 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 GLRA1P23415 457 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 MATKP42679 507 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 ACAA2P42765 397 aaKnown RBP3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 ALDH3B1P43353 468 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 RABIFP47224 123 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 HNMTP50135 292 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 SMSP52788 366 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 LIMK2P53671 638 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 ATXN3P54252 364 aaPredicted RBP3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 GEMP55040 296 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 MFGE8Q08431 387 aaPredicted RBP3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 HSPA14Q0VDF9 509 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 SLC17A1Q14916 467 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 KRT31Q15323 416 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 OR1C1Q15619 314 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 STX1AQ16623 288 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 MAJINQ3KP22 176 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 SLC39A12Q504Y0 691 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 EIPR1Q53HC9 387 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 CT45A2Q5DJT8 189 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 ZNF506Q5JVG8 444 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 LEMD1Q68G75 181 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 REP15Q6BDI9 236 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 REG3GQ6UW15 175 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 Q6ZRG5 221 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 OTUD6AQ7L8S5 288 aa3.86□□□□□ -1.79
HMGB1P38-201ENST00000490557 MIER3Q7Z3K6 550 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms