RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 C17orf62Q9BQA9 187 aa16.98■□□□□ 0.31
VIM-206ENST00000487938 DPH7Q9BTV6 452 aa16.98■□□□□ 0.31
VIM-206ENST00000487938 XKR8Q9H6D3 395 aa16.98■□□□□ 0.31
VIM-206ENST00000487938 MKLN1Q9UL63 735 aa16.98■□□□□ 0.31
VIM-206ENST00000487938 PNMA8CA0A1B0GUJ8 204 aa16.98■□□□□ 0.31
VIM-206ENST00000487938 PDZK1P1A8MUH7 402 aa16.98■□□□□ 0.31
VIM-206ENST00000487938 PRKYO43930 277 aa16.98■□□□□ 0.31
VIM-206ENST00000487938 TBX19O60806 448 aa16.98■□□□□ 0.31
VIM-206ENST00000487938 UGT2B17O75795 530 aa16.98■□□□□ 0.31
VIM-206ENST00000487938 HBQ1P09105 142 aa16.98■□□□□ 0.31
VIM-206ENST00000487938 GSTM5P46439 218 aa16.98■□□□□ 0.31
VIM-206ENST00000487938 NKX2-5P52952 324 aaPredicted RBP16.98■□□□□ 0.31
VIM-206ENST00000487938 REEP5Q00765 189 aa16.98■□□□□ 0.31
VIM-206ENST00000487938 RPA4Q13156 261 aa16.98■□□□□ 0.31
VIM-206ENST00000487938 OR4C11Q6IEV9 310 aa16.98■□□□□ 0.31
VIM-206ENST00000487938 OR8H2Q8N162 312 aa16.98■□□□□ 0.31
VIM-206ENST00000487938 DHRS1Q96LJ7 313 aa16.98■□□□□ 0.31
VIM-206ENST00000487938 FERD3LQ96RJ6 166 aa16.98■□□□□ 0.31
VIM-206ENST00000487938 SLC30A2Q9BRI3 323 aa16.98■□□□□ 0.31
VIM-206ENST00000487938 POLR2J2Q9GZM3 115 aaKnown RBP16.98■□□□□ 0.31
VIM-206ENST00000487938 TPK1Q9H3S4 243 aa16.98■□□□□ 0.31
VIM-206ENST00000487938 KLHL31Q9H511 634 aa16.98■□□□□ 0.31
VIM-206ENST00000487938 SNTG1Q9NSN8 517 aa16.98■□□□□ 0.31
VIM-206ENST00000487938 RPL36Q9Y3U8 105 aaKnown RBP16.98■□□□□ 0.31
VIM-206ENST00000487938 CRYBB2P43320 205 aa16.97■□□□□ 0.31
VIM-206ENST00000487938 CDK3Q00526 305 aa16.97■□□□□ 0.31
VIM-206ENST00000487938 GAB4Q2WGN9 574 aa16.97■□□□□ 0.31
VIM-206ENST00000487938 NATD1Q8N6N6 113 aa16.97■□□□□ 0.31
VIM-206ENST00000487938 NANOGP1Q8N7R0 232 aa16.97■□□□□ 0.31
VIM-206ENST00000487938 TP53I13Q8NBR0 393 aaPredicted RBP16.97■□□□□ 0.31
VIM-206ENST00000487938 OR8J1Q8NGP2 316 aa16.97■□□□□ 0.31
VIM-206ENST00000487938 ZNF707Q96C28 371 aaPredicted RBP16.97■□□□□ 0.31
VIM-206ENST00000487938 TXNDC15Q96J42 360 aa16.97■□□□□ 0.31
VIM-206ENST00000487938 SLC35G5Q96KT7 338 aa16.97■□□□□ 0.31
VIM-206ENST00000487938 PRR14Q9BWN1 585 aa16.97■□□□□ 0.31
VIM-206ENST00000487938 AICDAQ9GZX7 198 aa16.97■□□□□ 0.31
VIM-206ENST00000487938 RERGLQ9H628 205 aa16.97■□□□□ 0.31
VIM-206ENST00000487938 P2RX2Q9UBL9 471 aa16.97■□□□□ 0.31
VIM-206ENST00000487938 NDOR1Q9UHB4 597 aa16.97■□□□□ 0.31
VIM-206ENST00000487938 WBP11Q9Y2W2 641 aaKnown RBP16.97■□□□□ 0.31
VIM-206ENST00000487938 NUMA1Q14980 2115 aa16.97■□□□□ 0.31
VIM-206ENST00000487938 HTR3EA5X5Y0 456 aa16.96■□□□□ 0.31
VIM-206ENST00000487938 MMP11P24347 488 aa16.96■□□□□ 0.31
VIM-206ENST00000487938 ETV6P41212 452 aa16.96■□□□□ 0.31
VIM-206ENST00000487938 MXD1Q05195 221 aa16.96■□□□□ 0.31
VIM-206ENST00000487938 ARHGAP19Q14CB8 494 aa16.96■□□□□ 0.31
VIM-206ENST00000487938 GPR19Q15760 415 aa16.96■□□□□ 0.31
VIM-206ENST00000487938 ZNF750Q32MQ0 723 aa16.96■□□□□ 0.31
VIM-206ENST00000487938 TMEM201Q5SNT2 666 aa16.96■□□□□ 0.31
VIM-206ENST00000487938 NDUFAF5Q5TEU4 345 aa16.96■□□□□ 0.31
VIM-206ENST00000487938 MFSD4BQ5TF39 518 aa16.96■□□□□ 0.31
VIM-206ENST00000487938 FAM46CQ5VWP2 391 aa16.96■□□□□ 0.31
VIM-206ENST00000487938 LIPKQ5VXJ0 399 aa16.96■□□□□ 0.31
VIM-206ENST00000487938 MEDAGQ5VYS4 303 aa16.96■□□□□ 0.31
VIM-206ENST00000487938 ZER1Q7Z7L7 766 aa16.96■□□□□ 0.31
VIM-206ENST00000487938 TBC1D19Q8N5T2 526 aa16.96■□□□□ 0.31
VIM-206ENST00000487938 GPA33Q99795 319 aa16.96■□□□□ 0.31
VIM-206ENST00000487938 FUZQ9BT04 418 aa16.96■□□□□ 0.31
VIM-206ENST00000487938 FNDC11Q9BVV2 318 aa16.96■□□□□ 0.31
VIM-206ENST00000487938 TMEM245Q9H330 911 aa16.96■□□□□ 0.31
VIM-206ENST00000487938 SMURF1Q9HCE7 757 aa16.96■□□□□ 0.31
VIM-206ENST00000487938 ZCCHC3Q9NUD5 404 aaKnown RBP16.96■□□□□ 0.31
VIM-206ENST00000487938 ACAD8Q9UKU7 415 aa16.96■□□□□ 0.31
VIM-206ENST00000487938 OR1A2Q9Y585 309 aa16.96■□□□□ 0.31
VIM-206ENST00000487938 EPHX1P07099 455 aa16.96■□□□□ 0.31
VIM-206ENST00000487938 PSMA1P25786 263 aaKnown RBP16.96■□□□□ 0.31
VIM-206ENST00000487938 SSR2P43308 183 aa16.96■□□□□ 0.31
VIM-206ENST00000487938 NCBP2P52298 156 aaKnown RBP eCLIP16.96■□□□□ 0.31
VIM-206ENST00000487938 CSNK1G2P78368 415 aa16.96■□□□□ 0.31
VIM-206ENST00000487938 CAMK1Q14012 370 aa16.96■□□□□ 0.31
VIM-206ENST00000487938 GINS1Q14691 196 aa16.96■□□□□ 0.31
VIM-206ENST00000487938 ACSM5Q6NUN0 579 aa16.96■□□□□ 0.31
VIM-206ENST00000487938 ZNF793Q6ZN11 406 aa16.96■□□□□ 0.31
VIM-206ENST00000487938 FAM92BQ6ZTR7 304 aa16.96■□□□□ 0.31
VIM-206ENST00000487938 IQCHQ86VS3 1027 aa16.96■□□□□ 0.31
VIM-206ENST00000487938 NUP210Q8TEM1 1887 aaPredicted RBP16.96■□□□□ 0.31
VIM-206ENST00000487938 PIK3R3Q92569 461 aa16.96■□□□□ 0.31
VIM-206ENST00000487938 AMDHD1Q96NU7 426 aa16.96■□□□□ 0.31
VIM-206ENST00000487938 MND1Q9BWT6 205 aa16.96■□□□□ 0.31
VIM-206ENST00000487938 OSGEPL1Q9H4B0 414 aa16.96■□□□□ 0.31
VIM-206ENST00000487938 MBNL1Q9NR56 388 aaKnown RBP16.96■□□□□ 0.31
VIM-206ENST00000487938 FBXL12Q9NXK8 326 aa16.96■□□□□ 0.31
VIM-206ENST00000487938 CRNNQ9UBG3 495 aaPredicted RBP16.96■□□□□ 0.31
VIM-206ENST00000487938 TBC1D3BA6NDS4 549 aa16.95■□□□□ 0.3
VIM-206ENST00000487938 ASNA1O43681 348 aa16.95■□□□□ 0.3
VIM-206ENST00000487938 ERAL1O75616 437 aaKnown RBP16.95■□□□□ 0.3
VIM-206ENST00000487938 PCDH8O95206 1070 aa16.95■□□□□ 0.3
VIM-206ENST00000487938 APOL3O95236 402 aa16.95■□□□□ 0.3
VIM-206ENST00000487938 EPPINO95925 133 aa16.95■□□□□ 0.3
VIM-206ENST00000487938 FGBP02675 491 aa16.95■□□□□ 0.3
VIM-206ENST00000487938 RPN2P04844 631 aa16.95■□□□□ 0.3
VIM-206ENST00000487938 HNRNPA1P09651 372 aaKnown RBP eCLIP16.95■□□□□ 0.3
VIM-206ENST00000487938 IL12RB1P42701 662 aa16.95■□□□□ 0.3
VIM-206ENST00000487938 DEFA1P59665 94 aa16.95■□□□□ 0.3
VIM-206ENST00000487938 DEFA3P59666 94 aa16.95■□□□□ 0.3
VIM-206ENST00000487938 COL9A2Q14055 689 aaPredicted RBP16.95■□□□□ 0.3
VIM-206ENST00000487938 WSCD2Q2TBF2 565 aa16.95■□□□□ 0.3
VIM-206ENST00000487938 LRIT3Q3SXY7 679 aa16.95■□□□□ 0.3
VIM-206ENST00000487938 ZMAT1Q5H9K5 638 aa16.95■□□□□ 0.3
VIM-206ENST00000487938 ADAMTSL4Q6UY14 1074 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms