RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 VSTM4Q8IW00 320 aa3.63□□□□□ -1.83
PTCD3-216ENST00000487043 ZBTB8OSQ8IWT0 167 aa3.63□□□□□ -1.83
PTCD3-216ENST00000487043 ZNF843Q8N446 348 aa3.63□□□□□ -1.83
PTCD3-216ENST00000487043 METTL27Q8N6F8 245 aaPredicted RBP3.63□□□□□ -1.83
PTCD3-216ENST00000487043 METTL13Q8N6R0 699 aa3.63□□□□□ -1.83
PTCD3-216ENST00000487043 RNF149Q8NC42 400 aa3.63□□□□□ -1.83
PTCD3-216ENST00000487043 CCNYQ8ND76 341 aa3.63□□□□□ -1.83
PTCD3-216ENST00000487043 OR52E1Q8NGJ3 308 aa3.63□□□□□ -1.83
PTCD3-216ENST00000487043 OR4C15Q8NGM1 316 aa3.63□□□□□ -1.83
PTCD3-216ENST00000487043 OR13C3Q8NGS6 347 aa3.63□□□□□ -1.83
PTCD3-216ENST00000487043 NUDCD2Q8WVJ2 157 aa3.63□□□□□ -1.83
PTCD3-216ENST00000487043 TAF4BQ92750 862 aa3.63□□□□□ -1.83
PTCD3-216ENST00000487043 WBP2Q969T9 261 aa3.63□□□□□ -1.83
PTCD3-216ENST00000487043 DTD2Q96FN9 168 aa3.63□□□□□ -1.83
PTCD3-216ENST00000487043 SCRN2Q96FV2 425 aa3.63□□□□□ -1.83
PTCD3-216ENST00000487043 ST6GAL2Q96JF0 529 aa3.63□□□□□ -1.83
PTCD3-216ENST00000487043 DUX5Q96PT3 197 aa3.63□□□□□ -1.83
PTCD3-216ENST00000487043 NAP1L3Q99457 506 aaPredicted RBP3.63□□□□□ -1.83
PTCD3-216ENST00000487043 PRMT1Q99873 361 aaKnown RBP3.63□□□□□ -1.83
PTCD3-216ENST00000487043 CBWD1Q9BRT8 395 aa3.63□□□□□ -1.83
PTCD3-216ENST00000487043 SHARPINQ9H0F6 387 aa3.63□□□□□ -1.83
PTCD3-216ENST00000487043 C6orf106Q9H6K1 298 aaPredicted RBP3.63□□□□□ -1.83
PTCD3-216ENST00000487043 HPF1Q9NWY4 346 aa3.63□□□□□ -1.83
PTCD3-216ENST00000487043 DONSONQ9NYP3 566 aa3.63□□□□□ -1.83
PTCD3-216ENST00000487043 SLC12A6Q9UHW9 1150 aa3.63□□□□□ -1.83
PTCD3-216ENST00000487043 TMED7Q9Y3B3 224 aa3.63□□□□□ -1.83
PTCD3-216ENST00000487043 TRBV2A0A0J9YWF9 115 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 A0A1B0GUA9 196 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 C2orf92A0A1B0GVN3 265 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 ANTXRLA6NF34 631 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 ZNF233A6NK53 670 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 TLR4O00206 839 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 ATP6V0E1O15342 81 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 CLDN3O15551 220 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 SCO2O43819 266 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 EXTL3O43909 919 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 ATP6V1G1O75348 118 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 GMNNO75496 209 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 TOM1L1O75674 476 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 CXCL14O95715 111 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 GAS8O95995 478 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 VTNP04004 478 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 EPB41P11171 864 aaKnown RBP3.62□□□□□ -1.83
PTCD3-216ENST00000487043 PLA2G2AP14555 144 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 ETS1P14921 441 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 FERP16591 822 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 DESP17661 470 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 CCNA2P20248 432 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 IL10P22301 178 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 CA6P23280 308 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 GPC3P51654 580 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 CRYBB1P53674 252 aaPredicted RBP3.62□□□□□ -1.83
PTCD3-216ENST00000487043 ATXN3P54252 364 aaPredicted RBP3.62□□□□□ -1.83
PTCD3-216ENST00000487043 NLRP11P59045 1033 aaKnown RBP3.62□□□□□ -1.83
PTCD3-216ENST00000487043 ENPEPQ07075 957 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 RBM39Q14498 530 aaKnown RBP3.62□□□□□ -1.83
PTCD3-216ENST00000487043 SNRNP35Q16560 246 aaKnown RBP3.62□□□□□ -1.83
PTCD3-216ENST00000487043 IZUMO4Q1ZYL8 232 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 CCNYL2Q5T2Q4 361 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 NADSYN1Q6IA69 706 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 ARMCX5Q6P1M9 558 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 SLC39A4Q6P5W5 647 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 MARK2Q7KZI7 788 aaKnown RBP3.62□□□□□ -1.83
PTCD3-216ENST00000487043 MTERF4Q7Z6M4 381 aaKnown RBP3.62□□□□□ -1.83
PTCD3-216ENST00000487043 RPAINQ86UA6 219 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 SERINC5Q86VE9 423 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 LAX1Q8IWV1 398 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 RCOR2Q8IZ40 523 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 BATF2Q8N1L9 274 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 GPD1LQ8N335 351 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 PRSS35Q8N3Z0 413 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 MAB21L3Q8N8X9 362 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 SLC24A4Q8NFF2 622 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 DMBX1Q8NFW5 382 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 KIAA1524Q8TCG1 905 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 SAP25Q8TEE9 199 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 DNAJB3Q8WWF6 145 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 PIK3R3Q92569 461 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 GGHQ92820 318 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 CD101Q93033 1021 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 SLC35C1Q96A29 364 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 LGALS12Q96DT0 336 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 TRIM44Q96DX7 344 aaPredicted RBP3.62□□□□□ -1.83
PTCD3-216ENST00000487043 ZNF354BQ96LW1 612 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 GLT1D1Q96MS3 346 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 FAM111AQ96PZ2 611 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 BTBD9Q96Q07 612 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 ERGIC2Q96RQ1 377 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 PKP2Q99959 881 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 FAM213AQ9BRX8 229 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 TCHPQ9BT92 498 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 NUP58Q9BVL2 599 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 GCOM2Q9BZD3 368 aaPredicted RBP3.62□□□□□ -1.83
PTCD3-216ENST00000487043 MTMR12Q9C0I1 747 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 DDX31Q9H8H2 851 aaKnown RBP3.62□□□□□ -1.83
PTCD3-216ENST00000487043 RPF1Q9H9Y2 349 aaKnown RBP3.62□□□□□ -1.83
PTCD3-216ENST00000487043 TAAR2Q9P1P5 351 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 SPASTQ9UBP0 616 aa3.62□□□□□ -1.83
PTCD3-216ENST00000487043 FOXA2Q9Y261 457 aaPredicted RBP3.62□□□□□ -1.83
PTCD3-216ENST00000487043 COLEC10Q9Y6Z7 277 aa3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms