RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 CLDN1O95832 211 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 TBX6O95947 436 aaPredicted RBP6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 TUBB4AP04350 444 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 C2P06681 752 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 C8BP07358 591 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 SP1P08047 785 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 PCNAP12004 261 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 MTHFD2P13995 350 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 GFAPP14136 432 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 IFNGR1P15260 489 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 MST1P26927 711 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 CERS1P27544 350 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 TYK2P29597 1187 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 THBS2P35442 1172 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 CYB561P49447 251 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 CLCN2P51788 898 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 ALDH18A1P54886 795 aaKnown RBP6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 CASP6P55212 293 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 LIM2P55344 173 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 MLF1P58340 268 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 PHEXP78562 749 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 IRF9Q00978 393 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 PMP22Q01453 160 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 MAPKAPK3Q16644 382 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 TMEM35AQ53FP2 167 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 GLE1Q53GS7 698 aaKnown RBP6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 C1QL3Q5VWW1 255 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 CRYBG3Q68DQ2 2970 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 HIST2H2BCQ6DN03 193 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 SPINK14Q6IE38 97 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 ADNP2Q6IQ32 1131 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 GRHL2Q6ISB3 625 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 SLC25A25Q6KCM7 469 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 GK5Q6ZS86 529 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 TAOK1Q7L7X3 1001 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 CLNKQ7Z7G1 428 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 FJX1Q86VR8 437 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 LAS2Q8IYD9 372 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 CENPLQ8N0S6 344 aaPredicted RBP6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 MMGT1Q8N4V1 131 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 TEX9Q8N6V9 391 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 APCDD1LQ8NCL9 501 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 C7orf57Q8NEG2 295 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 MNS1Q8NEH6 495 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 B3GNT7Q8NFL0 401 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 ZNF473Q8WTR7 871 aaKnown RBP6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 TMEM125Q96AQ2 219 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 CMTM7Q96FZ5 175 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 VMP1Q96GC9 406 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 F2RL3Q96RI0 385 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 CSF3RQ99062 836 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 FMO2Q99518 471 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 CCDC77Q9BR77 488 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 CENPKQ9BS16 269 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 TBCDQ9BTW9 1192 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 MS4A8Q9BY19 250 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 DEFB126Q9BYW3 111 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 ADAP2Q9NPF8 381 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 NINJ2Q9NZG7 142 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 PPP4R1LQ9P1A2 415 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 DAPP1Q9UN19 280 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 PPIEQ9UNP9 301 aaKnown RBP6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 ANGPTL3Q9Y5C1 460 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 IKBKGQ9Y6K9 419 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 SPACA6W5XKT8 324 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 PCNX1Q96RV3 2341 aa6.33□□□□□ -1.4
CCDC88A-213ENST00000476903 NCOA6Q14686 2063 aaPredicted RBP6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 TRGV8A0A0C4DH27 118 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 ASPDHA6ND91 283 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 KIF2AO00139 706 aaPredicted RBP6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 KLK8O60259 260 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 NME2P1O60361 137 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 UGDHO60701 494 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 ZG16O60844 167 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 CTNSO60931 367 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 ACSL3O95573 720 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 ALDOAP04075 364 aaKnown RBP6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 IFNA16P05015 189 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 INHBAP08476 426 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 CTAGE8P0CG41 777 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 HIST1H1TP22492 207 aaPredicted RBP6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 VAMP1P23763 118 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 ATP5A1P25705 553 aaKnown RBP6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 PPP2R1BP30154 601 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 PIK3CBP42338 1070 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 SSR2P43308 183 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 PIK3CGP48736 1102 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 SERPINB9P50453 376 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 HLCSP50747 726 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 RAP1GDS1P52306 607 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 HNRNPFP52597 415 aaKnown RBP6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 ALDH6A1Q02252 535 aaKnown RBP6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 STX4Q12846 297 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 SERTAD2Q14140 314 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 ZRSR2Q15696 482 aaKnown RBP6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 ELAVL1Q15717 326 aaKnown RBP6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 PFKFB4Q16877 469 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 AP5B1Q2VPB7 878 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 KRTCAP3Q53RY4 240 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 PRR31Q5SQ13 230 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms