RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 NUP43Q8NFH3 380 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 OR56A3Q8NH54 315 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 ADAMTS19Q8TE59 1207 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 GRHL3Q8TE85 626 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 MBOAT4Q96T53 435 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 EPYCQ99645 322 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 DSN1Q9H410 356 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 NCDNQ9UBB6 729 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 PRRT4C9JH25 899 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 SIM1P81133 766 aaPredicted RBP11.05□□□□□ -0.64
NPHP4-204ENST00000460696 SCN1BQ07699 218 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 CAMK1Q14012 370 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 SUZ12Q15022 739 aaKnown RBP11.05□□□□□ -0.64
NPHP4-204ENST00000460696 ZNF542PQ5EBM4 170 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 FAM78AQ5JUQ0 283 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 DDI2Q5TDH0 399 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 HLA-DQA1Q5Y7H0 255 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 SHFQ7M4L6 423 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 HORMAD2Q8N7B1 307 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 OR56A1Q8NGH5 318 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 AHCYL2Q96HN2 611 aaKnown RBP11.05□□□□□ -0.64
NPHP4-204ENST00000460696 DMRTB1Q96MA1 342 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 TMED9Q9BVK6 235 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 RBCK1Q9BYM8 510 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 LMAN1LQ9HAT1 526 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 MYNNQ9NPC7 610 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 ASIC5Q9NY37 505 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 DKK3Q9UBP4 350 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 PCDHGA10Q9Y5H3 936 aa11.05□□□□□ -0.64
NPHP4-204ENST00000460696 SLC5A10A0PJK1 596 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 PRR23D1E9PI22 279 aaPredicted RBP11.04□□□□□ -0.64
NPHP4-204ENST00000460696 FAAHO00519 579 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 FURINP09958 794 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 PRR23D2P0DMB1 279 aaPredicted RBP11.04□□□□□ -0.64
NPHP4-204ENST00000460696 PGDP52209 483 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 RPS21P63220 83 aaKnown RBP11.04□□□□□ -0.64
NPHP4-204ENST00000460696 FRMPD2BQ6IN97 320 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 MZT2BQ6NZ67 158 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 PNCKQ6P2M8 343 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 RAB43Q86YS6 212 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 DENND6BQ8NEG7 585 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 B3GNT7Q8NFL0 401 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 OR8J1Q8NGP2 316 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 PIGKQ92643 395 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 SLC22A18Q96BI1 424 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 METTL2AQ96IZ6 378 aaKnown RBP11.04□□□□□ -0.64
NPHP4-204ENST00000460696 VNN3Q9NY84 501 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 STOML2Q9UJZ1 356 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 MRPS33Q9Y291 106 aaKnown RBP11.04□□□□□ -0.64
NPHP4-204ENST00000460696 HEBP2Q9Y5Z4 205 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 IRGMA1A4Y4 181 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 FUOMA2VDF0 154 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 SLC16A6O15403 523 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 RNGTTO60942 597 aaKnown RBP11.04□□□□□ -0.64
NPHP4-204ENST00000460696 DCDC1P59894 354 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 HOXC5Q00444 222 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 KIAA0040Q15053 153 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 PRRT3Q5FWE3 981 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 ANKRD13BQ86YJ7 626 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 METTL4Q8N3J2 472 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 PLA2G15Q8NCC3 412 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 C7orf57Q8NEG2 295 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 CHTF18Q8WVB6 975 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 MUL1Q969V5 352 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 TSACCQ96A04 125 aaPredicted RBP11.04□□□□□ -0.64
NPHP4-204ENST00000460696 RNF31Q96EP0 1072 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 OR4K3Q96R72 315 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 NIPSNAP1Q9BPW8 284 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 RHNO1Q9BSD3 238 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 MND1Q9BWT6 205 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 SLC17A9Q9BYT1 436 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 TAS2R16Q9NYV7 291 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 PCDHGA2Q9Y5H1 932 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 LOC285556D6RIA3 1793 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 PRAMEF33A0A0G2JMD5 474 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 PCDHGA12O60330 932 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 PRAMEF10O60809 474 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 STX11O75558 287 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 SEC14L2O76054 403 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 HMGN2P05204 90 aaKnown RBP11.04□□□□□ -0.64
NPHP4-204ENST00000460696 CELP19835 753 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 MYL9P24844 172 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 ZSWIM7Q19AV6 140 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 PARM1Q6UWI2 310 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 LCTLQ6UWM7 567 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 DCDC5Q6ZRR9 648 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 PRSS58Q8IYP2 241 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 PIK3R3Q92569 461 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 PPP1R14BQ96C90 147 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 KCTD7Q96MP8 289 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 CXorf36Q9H7Y0 433 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 TBCCD1Q9NVR7 557 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 ERVK13-1Q9NX77 482 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 STMN3Q9NZ72 180 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 NDUFAF4Q9P032 175 aa11.04□□□□□ -0.64
NPHP4-204ENST00000460696 GTPBP1O00178 669 aaKnown RBP11.03□□□□□ -0.64
NPHP4-204ENST00000460696 TNFRSF21O75509 655 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 OR5F1O95221 314 aa11.03□□□□□ -0.64
NPHP4-204ENST00000460696 KLF8O95600 359 aaPredicted RBP11.03□□□□□ -0.64
NPHP4-204ENST00000460696 CTSLP07711 333 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms