RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 PROSER1Q86XN7 944 aa14.74□□□□□ -0.05
USP40-206ENST00000443711 GALNT12Q8IXK2 581 aa14.74□□□□□ -0.05
USP40-206ENST00000443711 MORN4Q8NDC4 146 aa14.74□□□□□ -0.05
USP40-206ENST00000443711 ZNF675Q8TD23 568 aa14.74□□□□□ -0.05
USP40-206ENST00000443711 THAP4Q8WY91 577 aa14.74□□□□□ -0.05
USP40-206ENST00000443711 VPS33AQ96AX1 596 aa14.74□□□□□ -0.05
USP40-206ENST00000443711 ART5Q96L15 291 aa14.74□□□□□ -0.05
USP40-206ENST00000443711 MESP1Q9BRJ9 268 aa14.74□□□□□ -0.05
USP40-206ENST00000443711 SLC25A23Q9BV35 468 aa14.74□□□□□ -0.05
USP40-206ENST00000443711 CXorf21Q9HAI6 301 aa14.74□□□□□ -0.05
USP40-206ENST00000443711 BTNL2Q9UIR0 455 aa14.74□□□□□ -0.05
USP40-206ENST00000443711 NSG1A0A0A6YYJ2 146 aa14.73□□□□□ -0.05
USP40-206ENST00000443711 A0A1W2PP18 115 aa14.73□□□□□ -0.05
USP40-206ENST00000443711 CPSF4O95639 269 aaKnown RBP14.73□□□□□ -0.05
USP40-206ENST00000443711 C6orf47O95873 294 aa14.73□□□□□ -0.05
USP40-206ENST00000443711 HPP00738 406 aa14.73□□□□□ -0.05
USP40-206ENST00000443711 PGDP52209 483 aa14.73□□□□□ -0.05
USP40-206ENST00000443711 UCNP55089 124 aa14.73□□□□□ -0.05
USP40-206ENST00000443711 HSPB3Q12988 150 aa14.73□□□□□ -0.05
USP40-206ENST00000443711 ATP1A4Q13733 1029 aa14.73□□□□□ -0.05
USP40-206ENST00000443711 LTB4RQ15722 352 aa14.73□□□□□ -0.05
USP40-206ENST00000443711 MAPKAPK3Q16644 382 aa14.73□□□□□ -0.05
USP40-206ENST00000443711 PRICKLE4Q2TBC4 344 aa14.73□□□□□ -0.05
USP40-206ENST00000443711 FAM111BQ6SJ93 734 aa14.73□□□□□ -0.05
USP40-206ENST00000443711 ANKRD46Q86W74 232 aa14.73□□□□□ -0.05
USP40-206ENST00000443711 ADCY4Q8NFM4 1077 aa14.73□□□□□ -0.05
USP40-206ENST00000443711 OR9A2Q8NGT5 310 aa14.73□□□□□ -0.05
USP40-206ENST00000443711 SENP5Q96HI0 755 aaPredicted RBP14.73□□□□□ -0.05
USP40-206ENST00000443711 ITCHQ96J02 903 aa14.73□□□□□ -0.05
USP40-206ENST00000443711 IMMP1LQ96LU5 166 aa14.73□□□□□ -0.05
USP40-206ENST00000443711 CCDC115Q96NT0 180 aa14.73□□□□□ -0.05
USP40-206ENST00000443711 WDR77Q9BQA1 342 aaPredicted RBP14.73□□□□□ -0.05
USP40-206ENST00000443711 SLC52A3Q9NQ40 469 aa14.73□□□□□ -0.05
USP40-206ENST00000443711 TAS2R9Q9NYW1 312 aa14.73□□□□□ -0.05
USP40-206ENST00000443711 MAT2BQ9NZL9 334 aa14.73□□□□□ -0.05
USP40-206ENST00000443711 FBXL4Q9UKA2 621 aa14.73□□□□□ -0.05
USP40-206ENST00000443711 IGF2RP11717 2491 aa14.72□□□□□ -0.05
USP40-206ENST00000443711 PLOD2O00469 737 aa14.72□□□□□ -0.05
USP40-206ENST00000443711 ANGPT2O15123 496 aa14.72□□□□□ -0.05
USP40-206ENST00000443711 IFI6P09912 130 aa14.72□□□□□ -0.05
USP40-206ENST00000443711 CT62P0C5K7 136 aa14.72□□□□□ -0.05
USP40-206ENST00000443711 PRKAR1AP10644 381 aa14.72□□□□□ -0.05
USP40-206ENST00000443711 ICAM2P13598 275 aa14.72□□□□□ -0.05
USP40-206ENST00000443711 CD1EP15812 388 aa14.72□□□□□ -0.05
USP40-206ENST00000443711 CAPN3P20807 821 aa14.72□□□□□ -0.05
USP40-206ENST00000443711 PTGER1P34995 402 aa14.72□□□□□ -0.05
USP40-206ENST00000443711 SLC26A5P58743 744 aa14.72□□□□□ -0.05
USP40-206ENST00000443711 TLE3Q04726 772 aa14.72□□□□□ -0.05
USP40-206ENST00000443711 MGAT2Q10469 447 aa14.72□□□□□ -0.05
USP40-206ENST00000443711 CDC20Q12834 499 aa14.72□□□□□ -0.05
USP40-206ENST00000443711 STX5Q13190 355 aa14.72□□□□□ -0.05
USP40-206ENST00000443711 CYLC2Q14093 348 aaPredicted RBP14.72□□□□□ -0.05
USP40-206ENST00000443711 EXT1Q16394 746 aa14.72□□□□□ -0.05
USP40-206ENST00000443711 ZNF628Q5EBL2 1059 aa14.72□□□□□ -0.05
USP40-206ENST00000443711 ATP1A1-AS1Q5TC04 95 aa14.72□□□□□ -0.05
USP40-206ENST00000443711 CLECL1Q8IZS7 167 aa14.72□□□□□ -0.05
USP40-206ENST00000443711 VWA5B2Q8N398 1253 aa14.72□□□□□ -0.05
USP40-206ENST00000443711 KDF1Q8NAX2 398 aaPredicted RBP14.72□□□□□ -0.05
USP40-206ENST00000443711 NFAM1Q8NET5 270 aaPredicted RBP14.72□□□□□ -0.05
USP40-206ENST00000443711 OR4A15Q8NGL6 344 aa14.72□□□□□ -0.05
USP40-206ENST00000443711 RP9Q8TA86 221 aaKnown RBP14.72□□□□□ -0.05
USP40-206ENST00000443711 PSMA8Q8TAA3 256 aa14.72□□□□□ -0.05
USP40-206ENST00000443711 DOK4Q8TEW6 326 aa14.72□□□□□ -0.05
USP40-206ENST00000443711 KAT2AQ92830 837 aa14.72□□□□□ -0.05
USP40-206ENST00000443711 CTHRC1Q96CG8 243 aa14.72□□□□□ -0.05
USP40-206ENST00000443711 ERP27Q96DN0 273 aa14.72□□□□□ -0.05
USP40-206ENST00000443711 ELP4Q96EB1 424 aa14.72□□□□□ -0.05
USP40-206ENST00000443711 FBXL20Q96IG2 436 aa14.72□□□□□ -0.05
USP40-206ENST00000443711 FER1L6-AS2Q96M78 137 aa14.72□□□□□ -0.05
USP40-206ENST00000443711 CNPPD1Q9BV87 410 aa14.72□□□□□ -0.05
USP40-206ENST00000443711 OR8D2Q9GZM6 311 aa14.72□□□□□ -0.05
USP40-206ENST00000443711 C3orf14Q9HBI5 128 aa14.72□□□□□ -0.05
USP40-206ENST00000443711 ZNF160Q9HCG1 818 aa14.72□□□□□ -0.05
USP40-206ENST00000443711 LEF1Q9UJU2 399 aaPredicted RBP14.72□□□□□ -0.05
USP40-206ENST00000443711 PPIEQ9UNP9 301 aaKnown RBP14.72□□□□□ -0.05
USP40-206ENST00000443711 POLHQ9Y253 713 aa14.72□□□□□ -0.05
USP40-206ENST00000443711 NDUFAF1Q9Y375 327 aa14.72□□□□□ -0.05
USP40-206ENST00000443711 A0A087WV48 116 aa14.71□□□□□ -0.05
USP40-206ENST00000443711 A0A087WV62 115 aa14.71□□□□□ -0.05
USP40-206ENST00000443711 LOC100653049A0A140TA62 436 aa14.71□□□□□ -0.05
USP40-206ENST00000443711 TAF4O00268 1085 aa14.71□□□□□ -0.05
USP40-206ENST00000443711 PLOD3O60568 738 aa14.71□□□□□ -0.05
USP40-206ENST00000443711 BCAS2O75934 225 aaPredicted RBP14.71□□□□□ -0.05
USP40-206ENST00000443711 KRT34O76011 436 aa14.71□□□□□ -0.05
USP40-206ENST00000443711 DDAH2O95865 285 aa14.71□□□□□ -0.05
USP40-206ENST00000443711 ABCB1P08183 1280 aaPredicted RBP14.71□□□□□ -0.05
USP40-206ENST00000443711 COX4I1P13073 169 aa14.71□□□□□ -0.05
USP40-206ENST00000443711 PRDX6P30041 224 aa14.71□□□□□ -0.05
USP40-206ENST00000443711 TRPC1P48995 793 aa14.71□□□□□ -0.05
USP40-206ENST00000443711 CDK9P50750 372 aaKnown RBP14.71□□□□□ -0.05
USP40-206ENST00000443711 RRADP55042 308 aa14.71□□□□□ -0.05
USP40-206ENST00000443711 HBA1P69905 142 aa14.71□□□□□ -0.05
USP40-206ENST00000443711 FUT7Q11130 342 aa14.71□□□□□ -0.05
USP40-206ENST00000443711 TLR1Q15399 786 aa14.71□□□□□ -0.05
USP40-206ENST00000443711 TRMT12Q53H54 448 aaKnown RBP14.71□□□□□ -0.05
USP40-206ENST00000443711 FAM91A1Q658Y4 838 aa14.71□□□□□ -0.05
USP40-206ENST00000443711 PLAG1Q6DJT9 500 aa14.71□□□□□ -0.05
USP40-206ENST00000443711 SLC2A7Q6PXP3 512 aa14.71□□□□□ -0.05
USP40-206ENST00000443711 SNX32Q86XE0 403 aa14.71□□□□□ -0.05
USP40-206ENST00000443711 TREML1Q86YW5 311 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms