RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 HERVK_113P63132 956 aa13.12□□□□□ -0.31
HMGN1-208ENST00000443046 ERVK-8P63133 956 aa13.12□□□□□ -0.31
HMGN1-208ENST00000443046 LAPTM5Q13571 262 aa13.12□□□□□ -0.31
HMGN1-208ENST00000443046 ACKR1Q16570 336 aa13.12□□□□□ -0.31
HMGN1-208ENST00000443046 AP5B1Q2VPB7 878 aa13.12□□□□□ -0.31
HMGN1-208ENST00000443046 CDKL4Q5MAI5 379 aa13.12□□□□□ -0.31
HMGN1-208ENST00000443046 WIPI1Q5MNZ9 446 aaPredicted RBP13.12□□□□□ -0.31
HMGN1-208ENST00000443046 TMEM64Q6YI46 380 aa13.12□□□□□ -0.31
HMGN1-208ENST00000443046 RNF111Q6ZNA4 994 aa13.12□□□□□ -0.31
HMGN1-208ENST00000443046 FRA10AC1Q70Z53 315 aa13.12□□□□□ -0.31
HMGN1-208ENST00000443046 LUZP2Q86TE4 346 aa13.12□□□□□ -0.31
HMGN1-208ENST00000443046 PACS2Q86VP3 889 aa13.12□□□□□ -0.31
HMGN1-208ENST00000443046 ZC3HC1Q86WB0 502 aaKnown RBP13.12□□□□□ -0.31
HMGN1-208ENST00000443046 TAGAPQ8N103 731 aa13.12□□□□□ -0.31
HMGN1-208ENST00000443046 TCAIMQ8N3R3 496 aa13.12□□□□□ -0.31
HMGN1-208ENST00000443046 DOK4Q8TEW6 326 aa13.12□□□□□ -0.31
HMGN1-208ENST00000443046 SLC44A1Q8WWI5 657 aa13.12□□□□□ -0.31
HMGN1-208ENST00000443046 IGFBPL1Q8WX77 278 aa13.12□□□□□ -0.31
HMGN1-208ENST00000443046 TMEM41AQ96HV5 264 aa13.12□□□□□ -0.31
HMGN1-208ENST00000443046 VPS39Q96JC1 886 aa13.12□□□□□ -0.31
HMGN1-208ENST00000443046 TM9SF2Q99805 663 aa13.12□□□□□ -0.31
HMGN1-208ENST00000443046 TUBA1CQ9BQE3 449 aa13.12□□□□□ -0.31
HMGN1-208ENST00000443046 MCMBPQ9BTE3 642 aa13.12□□□□□ -0.31
HMGN1-208ENST00000443046 ERVK-6Q9BXR3 956 aa13.12□□□□□ -0.31
HMGN1-208ENST00000443046 PIGMQ9H3S5 423 aa13.12□□□□□ -0.31
HMGN1-208ENST00000443046 WWOXQ9NZC7 414 aa13.12□□□□□ -0.31
HMGN1-208ENST00000443046 NDRG3Q9UGV2 375 aa13.12□□□□□ -0.31
HMGN1-208ENST00000443046 ERVK-19Q9WJR5 959 aa13.12□□□□□ -0.31
HMGN1-208ENST00000443046 HEATR5AQ86XA9 2040 aa13.12□□□□□ -0.31
HMGN1-208ENST00000443046 NCF1BA6NI72 391 aaPredicted RBP13.11□□□□□ -0.31
HMGN1-208ENST00000443046 NCF1CA8MVU1 366 aaPredicted RBP13.11□□□□□ -0.31
HMGN1-208ENST00000443046 CRLF1O75462 422 aa13.11□□□□□ -0.31
HMGN1-208ENST00000443046 NCF1P14598 390 aaPredicted RBP13.11□□□□□ -0.31
HMGN1-208ENST00000443046 PAX1P15863 534 aa13.11□□□□□ -0.31
HMGN1-208ENST00000443046 FPR1P21462 350 aa13.11□□□□□ -0.31
HMGN1-208ENST00000443046 MC3RP41968 323 aa13.11□□□□□ -0.31
HMGN1-208ENST00000443046 SLAMF1Q13291 335 aa13.11□□□□□ -0.31
HMGN1-208ENST00000443046 RCAN2Q14206 197 aa13.11□□□□□ -0.31
HMGN1-208ENST00000443046 FRG1Q14331 258 aaKnown RBP13.11□□□□□ -0.31
HMGN1-208ENST00000443046 ZNF267Q14586 743 aaPredicted RBP13.11□□□□□ -0.31
HMGN1-208ENST00000443046 STEAP4Q687X5 459 aa13.11□□□□□ -0.31
HMGN1-208ENST00000443046 C18orf63Q68DL7 685 aa13.11□□□□□ -0.31
HMGN1-208ENST00000443046 TIGD3Q6B0B8 471 aa13.11□□□□□ -0.31
HMGN1-208ENST00000443046 OR4C11Q6IEV9 310 aa13.11□□□□□ -0.31
HMGN1-208ENST00000443046 LAS2Q8IYD9 372 aa13.11□□□□□ -0.31
HMGN1-208ENST00000443046 FAM83FQ8NEG4 500 aaPredicted RBP13.11□□□□□ -0.31
HMGN1-208ENST00000443046 TRIM58Q8NG06 486 aa13.11□□□□□ -0.31
HMGN1-208ENST00000443046 WNT2BQ93097 391 aa13.11□□□□□ -0.31
HMGN1-208ENST00000443046 ESAMQ96AP7 390 aa13.11□□□□□ -0.31
HMGN1-208ENST00000443046 MARK4Q96L34 752 aa13.11□□□□□ -0.31
HMGN1-208ENST00000443046 PELOQ9BRX2 385 aaKnown RBP13.11□□□□□ -0.31
HMGN1-208ENST00000443046 G6PC3Q9BUM1 346 aa13.11□□□□□ -0.31
HMGN1-208ENST00000443046 GSX2Q9BZM3 304 aa13.11□□□□□ -0.31
HMGN1-208ENST00000443046 PHACTR1Q9C0D0 580 aa13.11□□□□□ -0.31
HMGN1-208ENST00000443046 RBSNQ9H1K0 784 aa13.11□□□□□ -0.31
HMGN1-208ENST00000443046 POPDC3Q9HBV1 291 aa13.11□□□□□ -0.31
HMGN1-208ENST00000443046 PPANQ9NQ55 473 aaKnown RBP13.11□□□□□ -0.31
HMGN1-208ENST00000443046 C6orf203Q9P0P8 240 aaPredicted RBP13.11□□□□□ -0.31
HMGN1-208ENST00000443046 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.1□□□□□ -0.31
HMGN1-208ENST00000443046 C2orf92A0A1B0GVN3 265 aa13.1□□□□□ -0.31
HMGN1-208ENST00000443046 FAM95CA0A1B0GW59 222 aa13.1□□□□□ -0.31
HMGN1-208ENST00000443046 CAPN14A8MX76 684 aa13.1□□□□□ -0.31
HMGN1-208ENST00000443046 STK16O75716 305 aa13.1□□□□□ -0.31
HMGN1-208ENST00000443046 TNFSF13O75888 250 aa13.1□□□□□ -0.31
HMGN1-208ENST00000443046 GPR75O95800 540 aa13.1□□□□□ -0.31
HMGN1-208ENST00000443046 CYP4B1P13584 511 aa13.1□□□□□ -0.31
HMGN1-208ENST00000443046 CPA2P48052 419 aa13.1□□□□□ -0.31
HMGN1-208ENST00000443046 HSPA7P48741 367 aa13.1□□□□□ -0.31
HMGN1-208ENST00000443046 TNFRSF17Q02223 184 aa13.1□□□□□ -0.31
HMGN1-208ENST00000443046 KRTAP1-1Q07627 177 aa13.1□□□□□ -0.31
HMGN1-208ENST00000443046 PCDH1Q08174 1060 aa13.1□□□□□ -0.31
HMGN1-208ENST00000443046 CHIT1Q13231 466 aa13.1□□□□□ -0.31
HMGN1-208ENST00000443046 PDK4Q16654 411 aa13.1□□□□□ -0.31
HMGN1-208ENST00000443046 HIST2H2ACQ16777 129 aaPredicted RBP13.1□□□□□ -0.31
HMGN1-208ENST00000443046 FBXO48Q5FWF7 155 aa13.1□□□□□ -0.31
HMGN1-208ENST00000443046 PAGE2BQ5JRK9 111 aa13.1□□□□□ -0.31
HMGN1-208ENST00000443046 DEPDC1Q5TB30 811 aa13.1□□□□□ -0.31
HMGN1-208ENST00000443046 KHDRBS2Q5VWX1 349 aaKnown RBP13.1□□□□□ -0.31
HMGN1-208ENST00000443046 HIST2H2AA3Q6FI13 130 aa13.1□□□□□ -0.31
HMGN1-208ENST00000443046 TMEM81Q6P7N7 255 aa13.1□□□□□ -0.31
HMGN1-208ENST00000443046 GPR180Q86V85 440 aa13.1□□□□□ -0.31
HMGN1-208ENST00000443046 RIT1Q92963 219 aa13.1□□□□□ -0.31
HMGN1-208ENST00000443046 ADIPOR1Q96A54 375 aa13.1□□□□□ -0.31
HMGN1-208ENST00000443046 INTS12Q96CB8 462 aaKnown RBP13.1□□□□□ -0.31
HMGN1-208ENST00000443046 CTHRC1Q96CG8 243 aa13.1□□□□□ -0.31
HMGN1-208ENST00000443046 PERPQ96FX8 193 aa13.1□□□□□ -0.31
HMGN1-208ENST00000443046 MS4A14Q96JA4 679 aa13.1□□□□□ -0.31
HMGN1-208ENST00000443046 WFIKKN1Q96NZ8 548 aa13.1□□□□□ -0.31
HMGN1-208ENST00000443046 CCL19Q99731 98 aa13.1□□□□□ -0.31
HMGN1-208ENST00000443046 SORBS1Q9BX66 1292 aaKnown RBP13.1□□□□□ -0.31
HMGN1-208ENST00000443046 DERL2Q9GZP9 239 aa13.1□□□□□ -0.31
HMGN1-208ENST00000443046 CNOT10Q9H9A5 744 aaKnown RBP13.1□□□□□ -0.31
HMGN1-208ENST00000443046 LZTFL1Q9NQ48 299 aa13.1□□□□□ -0.31
HMGN1-208ENST00000443046 SNX15Q9NRS6 342 aa13.1□□□□□ -0.31
HMGN1-208ENST00000443046 TEX10Q9NXF1 929 aaPredicted RBP13.1□□□□□ -0.31
HMGN1-208ENST00000443046 CLCF1Q9UBD9 225 aa13.1□□□□□ -0.31
HMGN1-208ENST00000443046 PTBP2Q9UKA9 531 aaKnown RBP13.1□□□□□ -0.31
HMGN1-208ENST00000443046 USF3Q68DE3 2245 aa13.09□□□□□ -0.31
HMGN1-208ENST00000443046 WASHC1A8K0Z3 465 aa13.09□□□□□ -0.31
HMGN1-208ENST00000443046 DNALI1O14645 258 aaPredicted RBP13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms