RNA–Protein interactions for RNA: ENST00000428696.6

SGCE-204, Transcript of sarcoglycan epsilon, humanhuman

TSL 1 (best) BASIC

Gene SGCE, Length 1,409 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCE-204ENST00000428696 GPC1P35052 558 aa13.56□□□□□ -0.24
SGCE-204ENST00000428696 ARG2P78540 354 aa13.56□□□□□ -0.24
SGCE-204ENST00000428696 OC90Q02509 493 aaPredicted RBP13.56□□□□□ -0.24
SGCE-204ENST00000428696 DUSP2Q05923 314 aa13.56□□□□□ -0.24
SGCE-204ENST00000428696 TERF2Q15554 542 aa13.56□□□□□ -0.24
SGCE-204ENST00000428696 PRSS53Q2L4Q9 553 aa13.56□□□□□ -0.24
SGCE-204ENST00000428696 ACER2Q5QJU3 275 aa13.56□□□□□ -0.24
SGCE-204ENST00000428696 CPTPQ5TA50 214 aa13.56□□□□□ -0.24
SGCE-204ENST00000428696 RNF111Q6ZNA4 994 aa13.56□□□□□ -0.24
SGCE-204ENST00000428696 C16orf47Q6ZP98 133 aaPredicted RBP13.56□□□□□ -0.24
SGCE-204ENST00000428696 LARP4Q71RC2 724 aaKnown RBP eCLIP13.56□□□□□ -0.24
SGCE-204ENST00000428696 MAVSQ7Z434 540 aa13.56□□□□□ -0.24
SGCE-204ENST00000428696 SPATA19Q7Z5L4 167 aa13.56□□□□□ -0.24
SGCE-204ENST00000428696 OR7A2PQ8NGA2 310 aa13.56□□□□□ -0.24
SGCE-204ENST00000428696 OR9A2Q8NGT5 310 aa13.56□□□□□ -0.24
SGCE-204ENST00000428696 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.56□□□□□ -0.24
SGCE-204ENST00000428696 ELP5Q8TE02 316 aa13.56□□□□□ -0.24
SGCE-204ENST00000428696 TM9SF4Q92544 642 aa13.56□□□□□ -0.24
SGCE-204ENST00000428696 CIDECQ96AQ7 238 aaPredicted RBP13.56□□□□□ -0.24
SGCE-204ENST00000428696 FCRL1Q96LA6 429 aa13.56□□□□□ -0.24
SGCE-204ENST00000428696 ZNF681Q96N22 645 aa13.56□□□□□ -0.24
SGCE-204ENST00000428696 RILPQ96NA2 401 aa13.56□□□□□ -0.24
SGCE-204ENST00000428696 OR52B2Q96RD2 323 aa13.56□□□□□ -0.24
SGCE-204ENST00000428696 GAL3ST4Q96RP7 486 aa13.56□□□□□ -0.24
SGCE-204ENST00000428696 DPY30Q9C005 99 aa13.56□□□□□ -0.24
SGCE-204ENST00000428696 SEMA4CQ9C0C4 833 aa13.56□□□□□ -0.24
SGCE-204ENST00000428696 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.56□□□□□ -0.24
SGCE-204ENST00000428696 CXorf21Q9HAI6 301 aa13.56□□□□□ -0.24
SGCE-204ENST00000428696 EHD3Q9NZN3 535 aa13.56□□□□□ -0.24
SGCE-204ENST00000428696 TUBD1Q9UJT1 453 aa13.56□□□□□ -0.24
SGCE-204ENST00000428696 DCTN4Q9UJW0 460 aa13.56□□□□□ -0.24
SGCE-204ENST00000428696 MED13Q9UHV7 2174 aa13.55□□□□□ -0.24
SGCE-204ENST00000428696 ZFYVE26Q68DK2 2539 aa13.55□□□□□ -0.24
SGCE-204ENST00000428696 POLR3GO15318 223 aaPredicted RBP13.55□□□□□ -0.24
SGCE-204ENST00000428696 PDPK1O15530 556 aa13.55□□□□□ -0.24
SGCE-204ENST00000428696 MAN1A2O60476 641 aa13.55□□□□□ -0.24
SGCE-204ENST00000428696 PRB1P04280 392 aa13.55□□□□□ -0.24
SGCE-204ENST00000428696 CT62P0C5K7 136 aa13.55□□□□□ -0.24
SGCE-204ENST00000428696 DDX5P17844 614 aaKnown RBP13.55□□□□□ -0.24
SGCE-204ENST00000428696 PRPS1L1P21108 318 aa13.55□□□□□ -0.24
SGCE-204ENST00000428696 MDH1P40925 334 aaKnown RBP13.55□□□□□ -0.24
SGCE-204ENST00000428696 IDH3AP50213 366 aa13.55□□□□□ -0.24
SGCE-204ENST00000428696 MANFP55145 182 aaKnown RBP13.55□□□□□ -0.24
SGCE-204ENST00000428696 MRPS35P82673 323 aaKnown RBP13.55□□□□□ -0.24
SGCE-204ENST00000428696 HSPB3Q12988 150 aa13.55□□□□□ -0.24
SGCE-204ENST00000428696 EXOSC7Q15024 291 aaKnown RBP13.55□□□□□ -0.24
SGCE-204ENST00000428696 MEP1AQ16819 746 aa13.55□□□□□ -0.24
SGCE-204ENST00000428696 TRMT12Q53H54 448 aaKnown RBP13.55□□□□□ -0.24
SGCE-204ENST00000428696 HLA-DQA1Q5Y7H0 255 aa13.55□□□□□ -0.24
SGCE-204ENST00000428696 EPGNQ6UW88 154 aa13.55□□□□□ -0.24
SGCE-204ENST00000428696 SLC29A4Q7RTT9 530 aa13.55□□□□□ -0.24
SGCE-204ENST00000428696 SZRD1Q7Z422 152 aa13.55□□□□□ -0.24
SGCE-204ENST00000428696 FAM9CQ8IZT9 166 aa13.55□□□□□ -0.24
SGCE-204ENST00000428696 VWA5B2Q8N398 1253 aa13.55□□□□□ -0.24
SGCE-204ENST00000428696 APCDD1LQ8NCL9 501 aa13.55□□□□□ -0.24
SGCE-204ENST00000428696 OR5L2Q8NGL0 311 aa13.55□□□□□ -0.24
SGCE-204ENST00000428696 CEP70Q8NHQ1 597 aa13.55□□□□□ -0.24
SGCE-204ENST00000428696 ZNF721Q8TF20 911 aa13.55□□□□□ -0.24
SGCE-204ENST00000428696 WBP1Q96G27 269 aa13.55□□□□□ -0.24
SGCE-204ENST00000428696 FBXL20Q96IG2 436 aa13.55□□□□□ -0.24
SGCE-204ENST00000428696 BBC3Q96PG8 261 aaPredicted RBP13.55□□□□□ -0.24
SGCE-204ENST00000428696 SMAD5Q99717 465 aaKnown RBP13.55□□□□□ -0.24
SGCE-204ENST00000428696 ANKRA2Q9H9E1 313 aa13.55□□□□□ -0.24
SGCE-204ENST00000428696 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.55□□□□□ -0.24
SGCE-204ENST00000428696 LUZP4Q9P127 313 aa13.55□□□□□ -0.24
SGCE-204ENST00000428696 FCHO1O14526 889 aa13.54□□□□□ -0.24
SGCE-204ENST00000428696 SCAMP2O15127 329 aaKnown RBP13.54□□□□□ -0.24
SGCE-204ENST00000428696 CFLARO15519 480 aa13.54□□□□□ -0.24
SGCE-204ENST00000428696 LAMP1P11279 417 aa13.54□□□□□ -0.24
SGCE-204ENST00000428696 PCSK2P16519 638 aa13.54□□□□□ -0.24
SGCE-204ENST00000428696 RPL3P39023 403 aaKnown RBP13.54□□□□□ -0.24
SGCE-204ENST00000428696 GYS2P54840 703 aa13.54□□□□□ -0.24
SGCE-204ENST00000428696 RNF4P78317 190 aa13.54□□□□□ -0.24
SGCE-204ENST00000428696 MFAP5Q13361 173 aa13.54□□□□□ -0.24
SGCE-204ENST00000428696 SMU1Q2TAY7 513 aa13.54□□□□□ -0.24
SGCE-204ENST00000428696 TMEM198Q66K66 360 aa13.54□□□□□ -0.24
SGCE-204ENST00000428696 ZNF551Q7Z340 670 aaPredicted RBP13.54□□□□□ -0.24
SGCE-204ENST00000428696 BEST3Q8N1M1 668 aa13.54□□□□□ -0.24
SGCE-204ENST00000428696 CATSPER1Q8NEC5 780 aa13.54□□□□□ -0.24
SGCE-204ENST00000428696 LMF1Q96S06 567 aa13.54□□□□□ -0.24
SGCE-204ENST00000428696 TCF7L2Q9NQB0 619 aa13.54□□□□□ -0.24
SGCE-204ENST00000428696 ATAD3AQ9NVI7 634 aa13.54□□□□□ -0.24
SGCE-204ENST00000428696 MAP10Q9P2G4 905 aa13.54□□□□□ -0.24
SGCE-204ENST00000428696 A0A0G2JND7 137 aa13.53□□□□□ -0.24
SGCE-204ENST00000428696 E9PBE3 544 aa13.53□□□□□ -0.24
SGCE-204ENST00000428696 ZNF195O14628 629 aa13.53□□□□□ -0.24
SGCE-204ENST00000428696 UBDO15205 165 aa13.53□□□□□ -0.24
SGCE-204ENST00000428696 DPM1O60762 260 aa13.53□□□□□ -0.24
SGCE-204ENST00000428696 EDF1O60869 148 aaKnown RBP13.53□□□□□ -0.24
SGCE-204ENST00000428696 TGDSO95455 350 aa13.53□□□□□ -0.24
SGCE-204ENST00000428696 WDPCPO95876 746 aa13.53□□□□□ -0.24
SGCE-204ENST00000428696 ATP1B1P05026 303 aa13.53□□□□□ -0.24
SGCE-204ENST00000428696 GPR143P51810 404 aa13.53□□□□□ -0.24
SGCE-204ENST00000428696 PRKAG1P54619 331 aa13.53□□□□□ -0.24
SGCE-204ENST00000428696 CLDN8P56748 225 aa13.53□□□□□ -0.24
SGCE-204ENST00000428696 MAP4K2Q12851 820 aa13.53□□□□□ -0.24
SGCE-204ENST00000428696 PRICKLE4Q2TBC4 344 aa13.53□□□□□ -0.24
SGCE-204ENST00000428696 LSM12Q3MHD2 195 aaKnown RBP13.53□□□□□ -0.24
SGCE-204ENST00000428696 ZNF385BQ569K4 471 aa13.53□□□□□ -0.24
SGCE-204ENST00000428696 TMEM107Q6UX40 140 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms