RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 NUPL2O15504 423 aaKnown RBP8.2□□□□□ -1.1
USP40-203ENST00000427112 HOXC11O43248 304 aaPredicted RBP8.2□□□□□ -1.1
USP40-203ENST00000427112 REM1O75628 298 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 CSF2RAP15509 400 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 TIMP2P16035 220 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 RPS3P23396 243 aaKnown RBP eCLIP8.2□□□□□ -1.1
USP40-203ENST00000427112 SLC6A11P48066 632 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 MVDP53602 400 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 MRPL28Q13084 256 aaKnown RBP8.2□□□□□ -1.1
USP40-203ENST00000427112 IRAK1BP1Q5VVH5 260 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 FAM92BQ6ZTR7 304 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 PLPP6Q8IY26 295 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 REM2Q8IYK8 340 aaPredicted RBP8.2□□□□□ -1.1
USP40-203ENST00000427112 GPR32P1Q8NGA4 272 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 OR8K5Q8NH50 307 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 IPCEF1Q8WWN9 437 aaPredicted RBP8.2□□□□□ -1.1
USP40-203ENST00000427112 ASB15Q8WXK1 588 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 TTLL2Q9BWV7 592 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 GALNT9Q9HCQ5 603 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 ZNF224Q9NZL3 707 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 HEATR5BQ9P2D3 2071 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 SPATA2Q9UM82 520 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 POFUT2Q9Y2G5 429 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 C1orf226A1L170 272 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 ISM1B1AKI9 464 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 PAHP00439 452 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 ACP5P13686 325 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 ENDOUP21128 410 aaKnown RBP8.2□□□□□ -1.1
USP40-203ENST00000427112 CD72P21854 359 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 NNMTP40261 264 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 IL12RB1P42701 662 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 RFX2P48378 723 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 CCDC58Q4VC31 144 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 IDNKQ5T6J7 187 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 AGAP6Q5VW22 663 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 PLAG1Q6DJT9 500 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 ERICH5Q6P6B1 374 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 PODNL1Q6PEZ8 512 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 SLCO4C1Q6ZQN7 724 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 GRASPQ7Z6J2 395 aaPredicted RBP8.2□□□□□ -1.1
USP40-203ENST00000427112 DNAJC5GQ8N7S2 189 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 L3MBTL4Q8NA19 623 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 CYB561A3Q8NBI2 242 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 GLYATL1Q969I3 302 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 ZNF558Q96NG5 402 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 AGAP4Q96P64 663 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 OR2A14Q96R47 310 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 LGR4Q9BXB1 951 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 UCK2Q9BZX2 261 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 OR51V1Q9H2C8 321 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 DYRK4Q9NR20 520 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 GULP1Q9UBP9 304 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 SSR3Q9UNL2 185 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 NAALAD2Q9Y3Q0 740 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 HSPB11Q9Y547 144 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 PEX16Q9Y5Y5 336 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 IRAK3Q9Y616 596 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 HELZP42694 1942 aaKnown RBP8.2□□□□□ -1.1
USP40-203ENST00000427112 ARPC4-TTLL3A0A0A6YYG9 625 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 TRBV5-4A0A0C4DH59 114 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 B4GALT2O60909 372 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 UGT2B17O75795 530 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 SLITRK5O94991 958 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 SOX30O94993 753 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 LALBAP00709 142 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 EIF2S1P05198 315 aaKnown RBP8.2□□□□□ -1.1
USP40-203ENST00000427112 ANXA8P13928 327 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 HTR2BP41595 481 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 SRP9P49458 86 aaKnown RBP8.2□□□□□ -1.1
USP40-203ENST00000427112 CLCNKAP51800 687 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 HCCSP53701 268 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 RBBP4Q09028 425 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 LTB4RQ15722 352 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 ZSWIM7Q19AV6 140 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 FNDC3BQ53EP0 1204 aaKnown RBP8.2□□□□□ -1.1
USP40-203ENST00000427112 PNCKQ6P2M8 343 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 TMEM107Q6UX40 140 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 PARS2Q7L3T8 475 aaKnown RBP8.2□□□□□ -1.1
USP40-203ENST00000427112 C12orf40Q86WS4 652 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 OR6T1Q8NGN1 323 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 GRPEL2Q8TAA5 225 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 ZCCHC10Q8TBK6 192 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 ZFP3Q96NJ6 502 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 BBS4Q96RK4 519 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 NELL2Q99435 816 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 KLHL31Q9H511 634 aa8.2□□□□□ -1.1
USP40-203ENST00000427112 NDRG2Q9UN36 371 aaKnown RBP8.2□□□□□ -1.1
USP40-203ENST00000427112 FRYLO94915 3013 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 GREM1O60565 184 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 SNRNP200O75643 2136 aaKnown RBP8.19□□□□□ -1.1
USP40-203ENST00000427112 FURINP09958 794 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 SSTR2P30874 369 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 SSR2P43308 183 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 DGKGP49619 791 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 TAP2Q03519 686 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 HEPACAMQ14CZ8 416 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 TBCEQ15813 527 aaPredicted RBP8.19□□□□□ -1.1
USP40-203ENST00000427112 ZNF79Q15937 498 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 FLYWCH1Q4VC44 716 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 PIP5KL1Q5T9C9 394 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms