RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 DCST1Q5T197 706 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 TCTN3Q6NUS6 607 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 TMEM81Q6P7N7 255 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 TMEM91Q6ZNR0 172 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 USP45Q70EL2 814 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 GPC2Q8N158 579 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 BMPERQ8N8U9 685 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 ZFP41Q8N8Y5 198 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 ZNF485Q8NCK3 441 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 OR6C4Q8NGE1 309 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 SLC16A10Q8TF71 515 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 SKA2Q8WVK7 121 aaPredicted RBP10.15□□□□□ -0.78
USP54-204ENST00000422491 CIDECQ96AQ7 238 aaPredicted RBP10.15□□□□□ -0.78
USP54-204ENST00000422491 CXorf40BQ96DE9 158 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 ZNF578Q96N58 590 aaPredicted RBP10.15□□□□□ -0.78
USP54-204ENST00000422491 UBL7Q96S82 380 aaPredicted RBP10.15□□□□□ -0.78
USP54-204ENST00000422491 ARHGAP9Q9BRR9 750 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 MRPL9Q9BYD2 267 aaKnown RBP10.15□□□□□ -0.78
USP54-204ENST00000422491 FGF20Q9NP95 211 aaPredicted RBP10.15□□□□□ -0.78
USP54-204ENST00000422491 MBD1Q9UIS9 605 aaPredicted RBP10.15□□□□□ -0.78
USP54-204ENST00000422491 FCF1Q9Y324 198 aaKnown RBP10.15□□□□□ -0.78
USP54-204ENST00000422491 A0A0U1RQF3 1178 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 A0A1B0GVM2 712 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 FAAHO00519 579 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 OR12D1P0DN82 309 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 ELK1P19419 428 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 TIA1P31483 386 aaKnown RBP eCLIP10.15□□□□□ -0.78
USP54-204ENST00000422491 SPAM1P38567 509 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 CD79BP40259 229 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 SLC11A2P49281 568 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 RHOAP61586 193 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 HSF2Q03933 536 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 ARHGAP15Q53QZ3 475 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 CD276Q5ZPR3 534 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 MZT2AQ6P582 158 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 ARSKQ6UWY0 536 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 ADGRD2Q7Z7M1 963 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 GPR156Q8NFN8 814 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 RBPMSQ93062 196 aaKnown RBP10.15□□□□□ -0.78
USP54-204ENST00000422491 FUZQ9BT04 418 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 HDHD2Q9H0R4 259 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 REEP4Q9H6H4 257 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 NMRK2Q9NPI5 230 aa10.15□□□□□ -0.78
USP54-204ENST00000422491 HELZP42694 1942 aaKnown RBP10.15□□□□□ -0.78
USP54-204ENST00000422491 GNG14A0A1W2PPG7 69 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 TOR1AO14656 332 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 KHNYNO15037 678 aaKnown RBP10.14□□□□□ -0.79
USP54-204ENST00000422491 LZTS3O60299 673 aaPredicted RBP10.14□□□□□ -0.79
USP54-204ENST00000422491 SLC19A2O60779 497 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 PPM1BO75688 479 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 DHFRP00374 187 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 LALBAP00709 142 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 CFDP00746 253 aaPredicted RBP10.14□□□□□ -0.79
USP54-204ENST00000422491 OR56A5P0C7T3 313 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 CFL1P23528 166 aaKnown RBP10.14□□□□□ -0.79
USP54-204ENST00000422491 HOXD10P28358 340 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 HNF1BP35680 557 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 SOX18P35713 384 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 CHI3L1P36222 383 aaPredicted RBP10.14□□□□□ -0.79
USP54-204ENST00000422491 MAP2K6P52564 334 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 GBX2P52951 348 aaPredicted RBP10.14□□□□□ -0.79
USP54-204ENST00000422491 PTPN5P54829 565 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 CSTF1Q05048 431 aaKnown RBP10.14□□□□□ -0.79
USP54-204ENST00000422491 UBE3AQ05086 875 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 DBPQ10586 325 aaPredicted RBP10.14□□□□□ -0.79
USP54-204ENST00000422491 CAMK2DQ13557 499 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 SPIN4Q56A73 249 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 GARNL3Q5VVW2 1013 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 RAET1GQ6H3X3 334 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 GRHL2Q6ISB3 625 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 CHST9Q7L1S5 443 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 C16orf59Q7L2K0 433 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 GPR26Q8NDV2 337 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 GPR32P1Q8NGA4 272 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 OR6K2Q8NGY2 324 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 CEP76Q8TAP6 659 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 HSD17B8Q92506 261 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 ZSWIM3Q96MP5 696 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 ABCG5Q9H222 651 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 ERVMER34-1Q9H9K5 563 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 ZDHHC3Q9NYG2 299 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 TAS2R7Q9NYW3 318 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 EXTL2Q9UBQ6 330 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 ADAM30Q9UKF2 790 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 NINQ8N4C6 2090 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 PLXNB3Q9ULL4 1909 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 PRRG1O14668 218 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 KLKB1P03952 638 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 LIMS3P0CW19 117 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 LIMS4P0CW20 117 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 ACP2P11117 423 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 SSTR2P30874 369 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 ZNF81P51508 661 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 AP1S2P56377 157 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 DSC1Q08554 894 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 PUDPQ08623 228 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 RAB40BQ12829 278 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 SP140Q13342 867 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 ACSM5Q6NUN0 579 aa10.14□□□□□ -0.79
USP54-204ENST00000422491 RTL4Q6ZR62 310 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms