RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 ARID1AO14497 2285 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 IRGMA1A4Y4 181 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 PRODHO43272 600 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 OR10H3O60404 316 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 EEDO75530 441 aaKnown RBP8.1□□□□□ -1.11
SYNE1-211ENST00000413186 SERPINA3P01011 423 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 THRBP10828 461 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 PVRP15151 417 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 NPPBP16860 134 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 HIST1H1TP22492 207 aaPredicted RBP8.1□□□□□ -1.11
SYNE1-211ENST00000413186 TSFMP43897 325 aaKnown RBP8.1□□□□□ -1.11
SYNE1-211ENST00000413186 MYBPC3Q14896 1274 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.1□□□□□ -1.11
SYNE1-211ENST00000413186 MINDY1Q8N5J2 469 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 ZNF419Q96HQ0 510 aaPredicted RBP8.1□□□□□ -1.11
SYNE1-211ENST00000413186 COX14Q96I36 57 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 RDH12Q96NR8 316 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 C1QTNF3Q9BXJ4 246 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 ACPTQ9BZG2 426 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 MAT2BQ9NZL9 334 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 LAMA2P24043 3122 aaKnown RBP8.1□□□□□ -1.11
SYNE1-211ENST00000413186 TRPM6Q9BX84 2022 aa8.1□□□□□ -1.11
SYNE1-211ENST00000413186 ATG2BQ96BY7 2078 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 LILRA5A6NI73 299 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 H0YGG7 62 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 GLB1P16278 677 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 MATN1P21941 496 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 RPS7P62081 194 aaKnown RBP8.09□□□□□ -1.11
SYNE1-211ENST00000413186 SHC2P98077 582 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 B4GALNT1Q00973 533 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 LASP1Q14847 261 aaKnown RBP8.09□□□□□ -1.11
SYNE1-211ENST00000413186 AGERQ15109 404 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 ZNF544Q6NX49 715 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 ABI3BPQ7Z7G0 1075 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 OR5AK3PQ8NH89 298 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 VMP1Q96GC9 406 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 REXO5Q96IC2 774 aaKnown RBP8.09□□□□□ -1.11
SYNE1-211ENST00000413186 COL21A1Q96P44 957 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 CIB1Q99828 191 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 SPOCK3Q9BQ16 436 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 SLC23A2Q9UGH3 650 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 PTGDR2Q9Y5Y4 395 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 FLRT2O43155 660 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 ZNF888P0CJ79 500 aaPredicted RBP8.09□□□□□ -1.11
SYNE1-211ENST00000413186 MTHFD2P13995 350 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 GPR3P46089 330 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 GSK3BP49841 420 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 PFN3P60673 137 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 OC90Q02509 493 aaPredicted RBP8.09□□□□□ -1.11
SYNE1-211ENST00000413186 PMPCAQ10713 525 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 FNDC1Q4ZHG4 1894 aaPredicted RBP8.09□□□□□ -1.11
SYNE1-211ENST00000413186 YOD1Q5VVQ6 348 aaPredicted RBP8.09□□□□□ -1.11
SYNE1-211ENST00000413186 CYHR1Q6ZMK1 362 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 RNF111Q6ZNA4 994 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.09□□□□□ -1.11
SYNE1-211ENST00000413186 METTL4Q8N3J2 472 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 SCAIQ8N9R8 606 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 LMNTD1Q8N9Z9 388 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 FAM47BQ8NA70 645 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 PEX11GQ96HA9 241 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 SLC45A3Q96JT2 553 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 DEFB126Q9BYW3 111 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 DUSP15Q9H1R2 295 aaPredicted RBP8.09□□□□□ -1.11
SYNE1-211ENST00000413186 ARRDC1-AS1Q9H2J1 176 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 SLC39A1Q9NY26 324 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 USP36Q9P275 1121 aaKnown RBP8.09□□□□□ -1.11
SYNE1-211ENST00000413186 CNOT11Q9UKZ1 510 aaKnown RBP8.09□□□□□ -1.11
SYNE1-211ENST00000413186 PIAS2O75928 621 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 DDCP20711 480 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 EPHA4P54764 986 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 FOXA1P55317 472 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 ZNF45Q02386 682 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 CCDC58Q4VC31 144 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 GPR139Q6DWJ6 353 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 GTF2IRD2BQ6EKJ0 949 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 REEP3Q6NUK4 255 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 FAM83HQ6ZRV2 1179 aaPredicted RBP8.09□□□□□ -1.11
SYNE1-211ENST00000413186 GTF2IRD2Q86UP8 949 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 OR7A2PQ8NGA2 310 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 VANGL1Q8TAA9 524 aaPredicted RBP8.09□□□□□ -1.11
SYNE1-211ENST00000413186 RNFT2Q96EX2 444 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 HCN2Q9UL51 889 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 TUBAL3A6NHL2 446 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 AGAP14A8MT82 685 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 SCDO00767 359 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 MPZL2O60487 215 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 PNPP00491 289 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 RCVRNP35243 200 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 MSX2P35548 267 aaPredicted RBP8.09□□□□□ -1.11
SYNE1-211ENST00000413186 CAPGP40121 348 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 MPLP40238 635 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 SLC6A12P48065 614 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 NXPH1P58417 271 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 ID2Q02363 134 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 NSDHLQ15738 373 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 RNF151Q2KHN1 245 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 LARP4Q71RC2 724 aaKnown RBP eCLIP8.09□□□□□ -1.11
SYNE1-211ENST00000413186 IZUMO1Q8IYV9 350 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 KRTCAP2Q8N6L1 136 aa8.09□□□□□ -1.11
SYNE1-211ENST00000413186 KCT2Q8NC54 265 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms