RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 GOT1L1Q8NHS2 421 aaPredicted RBP16.91■□□□□ 0.3
SDC1-203ENST00000403076 ROPN1LQ96C74 230 aa16.91■□□□□ 0.3
SDC1-203ENST00000403076 PAIP1Q9H074 479 aaKnown RBP16.91■□□□□ 0.3
SDC1-203ENST00000403076 CXorf36Q9H7Y0 433 aa16.91■□□□□ 0.3
SDC1-203ENST00000403076 GPN2Q9H9Y4 310 aaPredicted RBP16.91■□□□□ 0.3
SDC1-203ENST00000403076 ADAP2Q9NPF8 381 aa16.91■□□□□ 0.3
SDC1-203ENST00000403076 MSRB2Q9Y3D2 182 aa16.91■□□□□ 0.3
SDC1-203ENST00000403076 CLCA3PQ9Y6N3 262 aa16.91■□□□□ 0.3
SDC1-203ENST00000403076 NUP210LQ5VU65 1888 aa16.9■□□□□ 0.3
SDC1-203ENST00000403076 CFAP54Q96N23 3096 aa16.9■□□□□ 0.3
SDC1-203ENST00000403076 SPTBN4Q9H254 2564 aa16.9■□□□□ 0.3
SDC1-203ENST00000403076 CCDC88CQ9P219 2028 aa16.9■□□□□ 0.3
SDC1-203ENST00000403076 C17orf105B2RV13 164 aa16.9■□□□□ 0.3
SDC1-203ENST00000403076 HNRNPCL1O60812 293 aaKnown RBP16.9■□□□□ 0.3
SDC1-203ENST00000403076 UNC5CO95185 931 aa16.9■□□□□ 0.3
SDC1-203ENST00000403076 PTPN4P29074 926 aa16.9■□□□□ 0.3
SDC1-203ENST00000403076 RASSF2P50749 326 aa16.9■□□□□ 0.3
SDC1-203ENST00000403076 PGDP52209 483 aa16.9■□□□□ 0.3
SDC1-203ENST00000403076 CAPRIN1Q14444 709 aaKnown RBP16.9■□□□□ 0.3
SDC1-203ENST00000403076 ZNF267Q14586 743 aaPredicted RBP16.9■□□□□ 0.3
SDC1-203ENST00000403076 TGIF1Q15583 401 aa16.9■□□□□ 0.3
SDC1-203ENST00000403076 TBC1D25Q3MII6 688 aa16.9■□□□□ 0.3
SDC1-203ENST00000403076 GTDC1Q4AE62 458 aa16.9■□□□□ 0.3
SDC1-203ENST00000403076 SFT2D3Q587I9 215 aa16.9■□□□□ 0.3
SDC1-203ENST00000403076 FAM111BQ6SJ93 734 aa16.9■□□□□ 0.3
SDC1-203ENST00000403076 DLEU7Q6UYE1 221 aa16.9■□□□□ 0.3
SDC1-203ENST00000403076 RINLQ6ZS11 566 aa16.9■□□□□ 0.3
SDC1-203ENST00000403076 ANKRD37Q7Z713 158 aa16.9■□□□□ 0.3
SDC1-203ENST00000403076 DTX1Q86Y01 620 aa16.9■□□□□ 0.3
SDC1-203ENST00000403076 LRRC58Q96CX6 371 aa16.9■□□□□ 0.3
SDC1-203ENST00000403076 CGREF1Q99674 301 aa16.9■□□□□ 0.3
SDC1-203ENST00000403076 FAM117AQ9C073 453 aa16.9■□□□□ 0.3
SDC1-203ENST00000403076 C3orf14Q9HBI5 128 aa16.9■□□□□ 0.3
SDC1-203ENST00000403076 NDE1Q9NXR1 346 aa16.9■□□□□ 0.3
SDC1-203ENST00000403076 WASF3Q9UPY6 502 aa16.9■□□□□ 0.3
SDC1-203ENST00000403076 PCDHB14Q9Y5E9 798 aa16.9■□□□□ 0.3
SDC1-203ENST00000403076 NUP214P35658 2090 aaPredicted RBP16.89■□□□□ 0.29
SDC1-203ENST00000403076 ERICH4A6NGS2 130 aa16.89■□□□□ 0.29
SDC1-203ENST00000403076 UMODP07911 640 aa16.89■□□□□ 0.29
SDC1-203ENST00000403076 UQCRC2P22695 453 aa16.89■□□□□ 0.29
SDC1-203ENST00000403076 GALNSP34059 522 aa16.89■□□□□ 0.29
SDC1-203ENST00000403076 CHI3L1P36222 383 aaPredicted RBP16.89■□□□□ 0.29
SDC1-203ENST00000403076 MC3RP41968 323 aa16.89■□□□□ 0.29
SDC1-203ENST00000403076 CCT3P49368 545 aaKnown RBP16.89■□□□□ 0.29
SDC1-203ENST00000403076 MRPS35P82673 323 aaKnown RBP16.89■□□□□ 0.29
SDC1-203ENST00000403076 SLC25A3Q00325 362 aa16.89■□□□□ 0.29
SDC1-203ENST00000403076 ELAVL1Q15717 326 aaKnown RBP16.89■□□□□ 0.29
SDC1-203ENST00000403076 LRIF1Q5T3J3 769 aa16.89■□□□□ 0.29
SDC1-203ENST00000403076 CPZQ66K79 652 aa16.89■□□□□ 0.29
SDC1-203ENST00000403076 C16orf89Q6UX73 402 aa16.89■□□□□ 0.29
SDC1-203ENST00000403076 HACD2Q6Y1H2 254 aa16.89■□□□□ 0.29
SDC1-203ENST00000403076 DGAT2L6Q6ZPD8 337 aa16.89■□□□□ 0.29
SDC1-203ENST00000403076 CPEB2Q7Z5Q1 589 aaKnown RBP16.89■□□□□ 0.29
SDC1-203ENST00000403076 OR5AK3PQ8NH89 298 aa16.89■□□□□ 0.29
SDC1-203ENST00000403076 FBXO27Q8NI29 283 aa16.89■□□□□ 0.29
SDC1-203ENST00000403076 ELP4Q96EB1 424 aa16.89■□□□□ 0.29
SDC1-203ENST00000403076 SLC35A5Q9BS91 424 aa16.89■□□□□ 0.29
SDC1-203ENST00000403076 CNPPD1Q9BV87 410 aa16.89■□□□□ 0.29
SDC1-203ENST00000403076 CXorf21Q9HAI6 301 aa16.89■□□□□ 0.29
SDC1-203ENST00000403076 SLC6A13Q9NSD5 602 aa16.89■□□□□ 0.29
SDC1-203ENST00000403076 SIRT3Q9NTG7 399 aaPredicted RBP16.89■□□□□ 0.29
SDC1-203ENST00000403076 MAT2BQ9NZL9 334 aa16.89■□□□□ 0.29
SDC1-203ENST00000403076 ERVK-11Q9UQG0 969 aa16.89■□□□□ 0.29
SDC1-203ENST00000403076 IGHV3-20A0A0C4DH32 117 aa16.88■□□□□ 0.29
SDC1-203ENST00000403076 EMC8O43402 210 aa16.88■□□□□ 0.29
SDC1-203ENST00000403076 SLITRK5O94991 958 aa16.88■□□□□ 0.29
SDC1-203ENST00000403076 ZCCHC18P0CG32 403 aa16.88■□□□□ 0.29
SDC1-203ENST00000403076 F8A1P23610 371 aa16.88■□□□□ 0.29
SDC1-203ENST00000403076 OTX2P32243 289 aa16.88■□□□□ 0.29
SDC1-203ENST00000403076 PRKAG1P54619 331 aa16.88■□□□□ 0.29
SDC1-203ENST00000403076 EEF1A2Q05639 463 aaKnown RBP16.88■□□□□ 0.29
SDC1-203ENST00000403076 TP53BP2Q13625 1128 aa16.88■□□□□ 0.29
SDC1-203ENST00000403076 PRICKLE4Q2TBC4 344 aa16.88■□□□□ 0.29
SDC1-203ENST00000403076 ZNF628Q5EBL2 1059 aa16.88■□□□□ 0.29
SDC1-203ENST00000403076 TMEM205Q6UW68 189 aa16.88■□□□□ 0.29
SDC1-203ENST00000403076 ANGPTL8Q6UXH0 198 aa16.88■□□□□ 0.29
SDC1-203ENST00000403076 CLEC4FQ8N1N0 589 aa16.88■□□□□ 0.29
SDC1-203ENST00000403076 VWA5B2Q8N398 1253 aa16.88■□□□□ 0.29
SDC1-203ENST00000403076 RBM15BQ8NDT2 890 aaKnown RBP16.88■□□□□ 0.29
SDC1-203ENST00000403076 PSMA8Q8TAA3 256 aa16.88■□□□□ 0.29
SDC1-203ENST00000403076 ZNF675Q8TD23 568 aa16.88■□□□□ 0.29
SDC1-203ENST00000403076 DAZLQ92904 295 aaKnown RBP16.88■□□□□ 0.29
SDC1-203ENST00000403076 C8orf44Q96CB5 159 aa16.88■□□□□ 0.29
SDC1-203ENST00000403076 AURKBQ96GD4 344 aaPredicted RBP16.88■□□□□ 0.29
SDC1-203ENST00000403076 SLC39A3Q9BRY0 314 aa16.88■□□□□ 0.29
SDC1-203ENST00000403076 ZCCHC3Q9NUD5 404 aaKnown RBP16.88■□□□□ 0.29
SDC1-203ENST00000403076 DDX18Q9NVP1 670 aaKnown RBP16.88■□□□□ 0.29
SDC1-203ENST00000403076 VAPAQ9P0L0 249 aa16.88■□□□□ 0.29
SDC1-203ENST00000403076 PTGFRNQ9P2B2 879 aa16.88■□□□□ 0.29
SDC1-203ENST00000403076 RNF103-CHMP3A0A140T963 221 aa16.87■□□□□ 0.29
SDC1-203ENST00000403076 PLOD2O00469 737 aa16.87■□□□□ 0.29
SDC1-203ENST00000403076 PCDH17O14917 1159 aa16.87■□□□□ 0.29
SDC1-203ENST00000403076 CT62P0C5K7 136 aa16.87■□□□□ 0.29
SDC1-203ENST00000403076 PSME3P61289 254 aa16.87■□□□□ 0.29
SDC1-203ENST00000403076 PRR5P85299 388 aa16.87■□□□□ 0.29
SDC1-203ENST00000403076 MAP4K2Q12851 820 aa16.87■□□□□ 0.29
SDC1-203ENST00000403076 SSPNQ14714 243 aa16.87■□□□□ 0.29
SDC1-203ENST00000403076 TRMT12Q53H54 448 aaKnown RBP16.87■□□□□ 0.29
SDC1-203ENST00000403076 BHLHB9Q6PI77 547 aa16.87■□□□□ 0.29
SDC1-203ENST00000403076 YTHDF3Q7Z739 585 aaKnown RBP16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms