RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 ZNF572Q7Z3I7 529 aaPredicted RBP8.4□□□□□ -1.07
LIG3-202ENST00000378526 TMEM150AQ86TG1 271 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 NPAS4Q8IUM7 802 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 FAM71AQ8IYT1 594 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 TMEM145Q8NBT3 493 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 SCARB1Q8WTV0 552 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 METTL21AQ8WXB1 218 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 YIPF5Q969M3 257 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 PRMT6Q96LA8 375 aaPredicted RBP8.4□□□□□ -1.07
LIG3-202ENST00000378526 UBTD1Q9HAC8 227 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 IL21RQ9HBE5 538 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 CDH20Q9HBT6 801 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 ABI3Q9P2A4 366 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 SLC35G6P0C7Q6 338 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 C1GALT1C1LP0DN25 315 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 CDK4P11802 303 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 MC4RP32245 332 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 ACY1Q03154 408 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 ABHD18Q0P651 414 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 SLAMF1Q13291 335 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 CES4AQ5XG92 561 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 RAET1GQ6H3X3 334 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 H3F3CQ6NXT2 135 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 CMC1Q7Z7K0 106 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 ZBTB2Q8N680 514 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 RCBTB1Q8NDN9 531 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 SH3YL1Q96HL8 342 aaPredicted RBP8.4□□□□□ -1.07
LIG3-202ENST00000378526 C11orf49Q9H6J7 331 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 CENPMQ9NSP4 180 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 FAM118AQ9NWS6 357 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 DNAJC27Q9NZQ0 273 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 JCADQ9P266 1359 aa8.4□□□□□ -1.07
LIG3-202ENST00000378526 URB1O60287 2271 aaKnown RBP8.39□□□□□ -1.07
LIG3-202ENST00000378526 CDHR4A6H8M9 788 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 SLC22A31A6NKX4 558 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 K7ERQ8 282 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 MOGAT2Q3SYC2 334 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 STRADAQ7RTN6 431 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 TRIB2Q92519 343 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 FKBP10Q96AY3 582 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 RADILQ96JH8 1075 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 MIR1-1HGQ9H1L0 117 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 GBA3Q9H227 469 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 ASB7Q9H672 318 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 CERS4Q9HA82 394 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 SLC22A23A1A5C7 686 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 SLC1A7O00341 560 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 BDNFP23560 247 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 HIST1H3AP68431 136 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 SBK1Q52WX2 424 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 RBM23Q86U06 439 aaKnown RBP8.39□□□□□ -1.07
LIG3-202ENST00000378526 FAM124AQ86V42 546 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 PHF13Q86YI8 300 aaPredicted RBP8.39□□□□□ -1.07
LIG3-202ENST00000378526 TRMT10AQ8TBZ6 339 aaKnown RBP8.39□□□□□ -1.07
LIG3-202ENST00000378526 ZFAND1Q8TCF1 268 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 ZCCHC4Q9H5U6 513 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 CILPO75339 1184 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 ADRB3P13945 408 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 HNRNPH3P31942 346 aaKnown RBP8.39□□□□□ -1.07
LIG3-202ENST00000378526 RPIAP49247 311 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 CACNG1Q06432 222 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 IRF5Q13568 498 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 CCDC116Q8IYX3 515 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 PRR22Q8IZ63 422 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 SLC25A44Q96H78 314 aaPredicted RBP8.39□□□□□ -1.07
LIG3-202ENST00000378526 TSSK2Q96PF2 358 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 ADAP2Q9NPF8 381 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 ZNF331Q9NQX6 463 aaPredicted RBP8.39□□□□□ -1.07
LIG3-202ENST00000378526 IMP3Q9NV31 184 aaKnown RBP8.39□□□□□ -1.07
LIG3-202ENST00000378526 SIDT1Q9NXL6 827 aaKnown RBP8.39□□□□□ -1.07
LIG3-202ENST00000378526 NDST3O95803 873 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 ADH1BP00325 375 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 BCKDHBP21953 392 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 S100A11P31949 105 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 MRPL49Q13405 166 aaKnown RBP8.39□□□□□ -1.07
LIG3-202ENST00000378526 TUSC3Q13454 348 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 RPL22L1Q6P5R6 122 aaKnown RBP8.39□□□□□ -1.07
LIG3-202ENST00000378526 PHYKPLQ8IUZ5 450 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 MUS81Q96NY9 551 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 CSPG4P5Q96PW8 444 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 DPEP3Q9H4B8 488 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 SLC28A3Q9HAS3 691 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 KCNIP1Q9NZI2 227 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 CPQQ9Y646 472 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 NDUFS8O00217 210 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 ACTL6BO94805 426 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 THBS1P07996 1170 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 CCKBRP32239 447 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 PBX2P40425 430 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 OPCMLQ14982 345 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 RBMS2Q15434 407 aaKnown RBP8.39□□□□□ -1.07
LIG3-202ENST00000378526 ACTBL2Q562R1 376 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 POMZP3Q6PJE2 187 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 NAXEQ8NCW5 288 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 ZNF668Q96K58 619 aaPredicted RBP8.39□□□□□ -1.07
LIG3-202ENST00000378526 HIF1ANQ9NWT6 349 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 TCAF1Q9Y4C2 921 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 HSFX4A0A1B0GTS1 333 aaPredicted RBP8.39□□□□□ -1.07
LIG3-202ENST00000378526 HSFX3A0A1B0GWH4 333 aaPredicted RBP8.39□□□□□ -1.07
LIG3-202ENST00000378526 M0R2N6 131 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms