RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 FXYD6-FXYD2A0A087WZ82 144 aa11.22□□□□□ -0.61
COL9A1-202ENST00000357250 E7EQ34 232 aa11.22□□□□□ -0.61
COL9A1-202ENST00000357250 CYBAP13498 195 aa11.22□□□□□ -0.61
COL9A1-202ENST00000357250 CD68P34810 354 aaPredicted RBP11.22□□□□□ -0.61
COL9A1-202ENST00000357250 STK19P49842 368 aaPredicted RBP11.22□□□□□ -0.61
COL9A1-202ENST00000357250 PMS2P3Q13401 168 aa11.22□□□□□ -0.61
COL9A1-202ENST00000357250 CHRDL2Q6WN34 429 aa11.22□□□□□ -0.61
COL9A1-202ENST00000357250 OR8D2Q9GZM6 311 aa11.22□□□□□ -0.61
COL9A1-202ENST00000357250 FXYD6Q9H0Q3 95 aa11.22□□□□□ -0.61
COL9A1-202ENST00000357250 CD93Q9NPY3 652 aa11.22□□□□□ -0.61
COL9A1-202ENST00000357250 PLCL2Q9UPR0 1127 aa11.22□□□□□ -0.61
COL9A1-202ENST00000357250 SOX1O00570 391 aaPredicted RBP11.22□□□□□ -0.61
COL9A1-202ENST00000357250 RNF13O43567 381 aa11.22□□□□□ -0.61
COL9A1-202ENST00000357250 PAK4O96013 591 aaPredicted RBP11.22□□□□□ -0.61
COL9A1-202ENST00000357250 CFIP05156 583 aa11.22□□□□□ -0.61
COL9A1-202ENST00000357250 VAMP1P23763 118 aa11.22□□□□□ -0.61
COL9A1-202ENST00000357250 GABRA3P34903 492 aa11.22□□□□□ -0.61
COL9A1-202ENST00000357250 IST1P53990 364 aa11.22□□□□□ -0.61
COL9A1-202ENST00000357250 CTBP2P56545 445 aa11.22□□□□□ -0.61
COL9A1-202ENST00000357250 COL9A2Q14055 689 aaPredicted RBP11.22□□□□□ -0.61
COL9A1-202ENST00000357250 ARL6IP1Q15041 203 aa11.22□□□□□ -0.61
COL9A1-202ENST00000357250 PROX2Q3B8N5 592 aa11.22□□□□□ -0.61
COL9A1-202ENST00000357250 GPAT4Q86UL3 456 aa11.22□□□□□ -0.61
COL9A1-202ENST00000357250 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.22□□□□□ -0.61
COL9A1-202ENST00000357250 SAMD12Q8N8I0 201 aa11.22□□□□□ -0.61
COL9A1-202ENST00000357250 RPLP0P6Q8NHW5 317 aa11.22□□□□□ -0.61
COL9A1-202ENST00000357250 FNDC8Q8TC99 324 aa11.22□□□□□ -0.61
COL9A1-202ENST00000357250 DPH7Q9BTV6 452 aa11.22□□□□□ -0.61
COL9A1-202ENST00000357250 MTHFD2LQ9H903 347 aaPredicted RBP11.22□□□□□ -0.61
COL9A1-202ENST00000357250 PREBQ9HCU5 417 aa11.22□□□□□ -0.61
COL9A1-202ENST00000357250 TAS2R8Q9NYW2 309 aa11.22□□□□□ -0.61
COL9A1-202ENST00000357250 DRGXA6NNA5 263 aa11.21□□□□□ -0.61
COL9A1-202ENST00000357250 MAN2B1O00754 1011 aa11.21□□□□□ -0.61
COL9A1-202ENST00000357250 RPS17P08708 135 aaKnown RBP11.21□□□□□ -0.61
COL9A1-202ENST00000357250 GNAO1P09471 354 aa11.21□□□□□ -0.61
COL9A1-202ENST00000357250 GRK5P34947 590 aa11.21□□□□□ -0.61
COL9A1-202ENST00000357250 FRKP42685 505 aaPredicted RBP11.21□□□□□ -0.61
COL9A1-202ENST00000357250 SLC9A3P48764 834 aa11.21□□□□□ -0.61
COL9A1-202ENST00000357250 KEAP1Q14145 624 aa11.21□□□□□ -0.61
COL9A1-202ENST00000357250 CNTN4Q8IWV2 1026 aa11.21□□□□□ -0.61
COL9A1-202ENST00000357250 NECTIN4Q96NY8 510 aa11.21□□□□□ -0.61
COL9A1-202ENST00000357250 FOLH1BQ9HBA9 442 aa11.21□□□□□ -0.61
COL9A1-202ENST00000357250 ZDHHC7Q9NXF8 308 aa11.21□□□□□ -0.61
COL9A1-202ENST00000357250 ABCG2Q9UNQ0 655 aa11.21□□□□□ -0.61
COL9A1-202ENST00000357250 TEX13DA0A0J9YY54 714 aaPredicted RBP11.21□□□□□ -0.61
COL9A1-202ENST00000357250 NME4O00746 187 aa11.21□□□□□ -0.61
COL9A1-202ENST00000357250 GPR37L1O60883 481 aa11.21□□□□□ -0.61
COL9A1-202ENST00000357250 CSNK1DP48730 415 aa11.21□□□□□ -0.61
COL9A1-202ENST00000357250 PPP5CP53041 499 aa11.21□□□□□ -0.61
COL9A1-202ENST00000357250 ERVPABLB-1P60509 514 aa11.21□□□□□ -0.61
COL9A1-202ENST00000357250 MEF2AQ02078 507 aaPredicted RBP11.21□□□□□ -0.61
COL9A1-202ENST00000357250 LAPTM4AQ15012 233 aa11.21□□□□□ -0.61
COL9A1-202ENST00000357250 MLIPQ5VWP3 458 aa11.21□□□□□ -0.61
COL9A1-202ENST00000357250 DCDC5Q6ZRR9 648 aa11.21□□□□□ -0.61
COL9A1-202ENST00000357250 TRIM74Q86UV6 250 aa11.21□□□□□ -0.61
COL9A1-202ENST00000357250 OR6N2Q8NGY6 317 aa11.21□□□□□ -0.61
COL9A1-202ENST00000357250 ECHDC3Q96DC8 303 aa11.21□□□□□ -0.61
COL9A1-202ENST00000357250 TTYH2Q9BSA4 534 aa11.21□□□□□ -0.61
COL9A1-202ENST00000357250 URM1Q9BTM9 101 aaKnown RBP11.21□□□□□ -0.61
COL9A1-202ENST00000357250 MRI1Q9BV20 369 aa11.21□□□□□ -0.61
COL9A1-202ENST00000357250 GSTO2Q9H4Y5 243 aa11.21□□□□□ -0.61
COL9A1-202ENST00000357250 LIN28AQ9H9Z2 209 aaKnown RBP11.21□□□□□ -0.61
COL9A1-202ENST00000357250 UCKL1Q9NWZ5 548 aa11.21□□□□□ -0.61
COL9A1-202ENST00000357250 SUSD2Q9UGT4 822 aa11.21□□□□□ -0.61
COL9A1-202ENST00000357250 PCDHGA7Q9Y5G6 932 aa11.21□□□□□ -0.61
COL9A1-202ENST00000357250 GPR89AB7ZAQ6 455 aa11.21□□□□□ -0.62
COL9A1-202ENST00000357250 RNGTTO60942 597 aaKnown RBP11.21□□□□□ -0.62
COL9A1-202ENST00000357250 GPR89BP0CG08 455 aa11.21□□□□□ -0.62
COL9A1-202ENST00000357250 CLUP10909 449 aa11.21□□□□□ -0.62
COL9A1-202ENST00000357250 C6P13671 934 aa11.21□□□□□ -0.62
COL9A1-202ENST00000357250 HERV-K104P61576 105 aa11.21□□□□□ -0.62
COL9A1-202ENST00000357250 P4HA3Q7Z4N8 544 aa11.21□□□□□ -0.62
COL9A1-202ENST00000357250 ZSCAN4Q8NAM6 433 aaPredicted RBP11.21□□□□□ -0.62
COL9A1-202ENST00000357250 TMEM125Q96AQ2 219 aa11.21□□□□□ -0.62
COL9A1-202ENST00000357250 MMABQ96EY8 250 aaPredicted RBP11.21□□□□□ -0.62
COL9A1-202ENST00000357250 C8orf33Q9H7E9 229 aaPredicted RBP11.21□□□□□ -0.62
COL9A1-202ENST00000357250 IL23AQ9NPF7 189 aa11.21□□□□□ -0.62
COL9A1-202ENST00000357250 HSFX1Q9UBD0 423 aa11.21□□□□□ -0.62
COL9A1-202ENST00000357250 NUFIP1Q9UHK0 495 aaKnown RBP11.21□□□□□ -0.62
COL9A1-202ENST00000357250 SH2B3Q9UQQ2 575 aa11.21□□□□□ -0.62
COL9A1-202ENST00000357250 DNAJB6O75190 326 aa11.21□□□□□ -0.62
COL9A1-202ENST00000357250 CHAF1BQ13112 559 aa11.21□□□□□ -0.62
COL9A1-202ENST00000357250 MFSD13AQ14CX5 517 aa11.21□□□□□ -0.62
COL9A1-202ENST00000357250 SLC35F1Q5T1Q4 408 aa11.21□□□□□ -0.62
COL9A1-202ENST00000357250 OR5L2Q8NGL0 311 aa11.21□□□□□ -0.62
COL9A1-202ENST00000357250 TMEM41AQ96HV5 264 aa11.21□□□□□ -0.62
COL9A1-202ENST00000357250 PTCHD1Q96NR3 888 aa11.21□□□□□ -0.62
COL9A1-202ENST00000357250 KATNBL1Q9H079 304 aa11.21□□□□□ -0.62
COL9A1-202ENST00000357250 KCNIP3Q9Y2W7 256 aa11.21□□□□□ -0.62
COL9A1-202ENST00000357250 HSPB11Q9Y547 144 aa11.21□□□□□ -0.62
COL9A1-202ENST00000357250 ENTPD2Q9Y5L3 495 aa11.21□□□□□ -0.62
COL9A1-202ENST00000357250 A0A1W2PQU0 124 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 HEXBP07686 556 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 OSMP13725 252 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 PDHA2P29803 388 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 CD40LGP29965 261 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 ZNF84P51523 738 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 PLGLB1Q02325 96 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 CCINQ13939 588 aa11.2□□□□□ -0.62
COL9A1-202ENST00000357250 TCTE1Q5JU00 501 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms