RNA–Protein interactions for RNA: ENST00000334414.10

PTPRB-202, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPRB, Length 12,316 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-202ENST00000334414 FAM122BQ7Z309 247 aa5.3□□□□□ -1.56
PTPRB-202ENST00000334414 KCTD20Q7Z5Y7 419 aa5.3□□□□□ -1.56
PTPRB-202ENST00000334414 C4orf32Q8N8J7 132 aa5.3□□□□□ -1.56
PTPRB-202ENST00000334414 RHOXF1Q8NHV9 184 aa5.3□□□□□ -1.56
PTPRB-202ENST00000334414 MITD1Q8WV92 249 aa5.3□□□□□ -1.56
PTPRB-202ENST00000334414 GATA6Q92908 595 aa5.3□□□□□ -1.56
PTPRB-202ENST00000334414 FCRL3Q96P31 734 aaPredicted RBP5.3□□□□□ -1.56
PTPRB-202ENST00000334414 UHRF2Q96PU4 802 aa5.3□□□□□ -1.56
PTPRB-202ENST00000334414 CDK15Q96Q40 435 aa5.3□□□□□ -1.56
PTPRB-202ENST00000334414 NKX6-2Q9C056 277 aaPredicted RBP5.3□□□□□ -1.56
PTPRB-202ENST00000334414 NR2E3Q9Y5X4 410 aa5.3□□□□□ -1.56
PTPRB-202ENST00000334414 NUP188Q5SRE5 1749 aa5.3□□□□□ -1.56
PTPRB-202ENST00000334414 LOXHD1Q8IVV2 1947 aa5.3□□□□□ -1.56
PTPRB-202ENST00000334414 CCDC88AQ3V6T2 1871 aa5.3□□□□□ -1.56
PTPRB-202ENST00000334414 OR51F1A6NGY5 319 aa5.3□□□□□ -1.56
PTPRB-202ENST00000334414 SOCS2O14508 198 aa5.3□□□□□ -1.56
PTPRB-202ENST00000334414 RXRBP28702 533 aa5.3□□□□□ -1.56
PTPRB-202ENST00000334414 RPL23AP62750 156 aaKnown RBP5.3□□□□□ -1.56
PTPRB-202ENST00000334414 ZNF574Q6ZN55 896 aaPredicted RBP5.3□□□□□ -1.56
PTPRB-202ENST00000334414 SHFQ7M4L6 423 aa5.3□□□□□ -1.56
PTPRB-202ENST00000334414 GPR142Q7Z601 462 aa5.3□□□□□ -1.56
PTPRB-202ENST00000334414 CEACAM19Q7Z692 300 aa5.3□□□□□ -1.56
PTPRB-202ENST00000334414 ZNF619Q8N2I2 560 aa5.3□□□□□ -1.56
PTPRB-202ENST00000334414 NLGN2Q8NFZ4 835 aa5.3□□□□□ -1.56
PTPRB-202ENST00000334414 LCN9Q8WX39 176 aa5.3□□□□□ -1.56
PTPRB-202ENST00000334414 ASB17Q8WXJ9 295 aa5.3□□□□□ -1.56
PTPRB-202ENST00000334414 ZDHHC12Q96GR4 267 aa5.3□□□□□ -1.56
PTPRB-202ENST00000334414 C7orf34Q96L11 122 aa5.3□□□□□ -1.56
PTPRB-202ENST00000334414 KREMEN1Q96MU8 473 aa5.3□□□□□ -1.56
PTPRB-202ENST00000334414 DEFB129Q9H1M3 183 aa5.3□□□□□ -1.56
PTPRB-202ENST00000334414 GAPDHSO14556 408 aaPredicted RBP5.29□□□□□ -1.56
PTPRB-202ENST00000334414 SCAMP1O15126 338 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 SPDEFO95238 335 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 POLR2CP19387 275 aaPredicted RBP5.29□□□□□ -1.56
PTPRB-202ENST00000334414 UGT8Q16880 541 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 OR52E8Q6IFG1 317 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 ADGRA1Q86SQ6 560 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 OR5AK2Q8NH90 309 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 TIGARQ9NQ88 270 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 MAP10Q9P2G4 905 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 GNG13Q9P2W3 67 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 KPTNQ9Y664 436 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 DLG5Q8TDM6 1919 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 FTCDNL1E5RQL4 147 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 MMP20O60882 483 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 OLFM2O95897 454 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 TNFAIP8L2Q6P589 184 aaPredicted RBP5.29□□□□□ -1.56
PTPRB-202ENST00000334414 HASPINQ8TF76 798 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 CORO2AQ92828 525 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 ZNF578Q96N58 590 aaPredicted RBP5.29□□□□□ -1.56
PTPRB-202ENST00000334414 ZNF558Q96NG5 402 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 ZBTB20Q9HC78 741 aaPredicted RBP5.29□□□□□ -1.56
PTPRB-202ENST00000334414 POLE4Q9NR33 117 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 ZNF701Q9NV72 531 aaPredicted RBP5.29□□□□□ -1.56
PTPRB-202ENST00000334414 PRODH2Q9UF12 536 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 LRRC72A6NJI9 287 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 MAGEB4O15481 346 aaPredicted RBP5.29□□□□□ -1.56
PTPRB-202ENST00000334414 TACR2P21452 398 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 HLA-DMAP28067 261 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 ETV5P41161 510 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 HTRA4P83105 476 aaPredicted RBP5.29□□□□□ -1.56
PTPRB-202ENST00000334414 MFSD13AQ14CX5 517 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 SCIMPQ6UWF3 145 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 THOC6Q86W42 341 aaKnown RBP5.29□□□□□ -1.56
PTPRB-202ENST00000334414 PARP16Q8N5Y8 322 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 OR4Q3Q8NH05 313 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 GRHL3Q8TE85 626 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 CASTOR1Q8WTX7 329 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 SLC39A13Q96H72 371 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 GORASP2Q9H8Y8 452 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 KCNIP1Q9NZI2 227 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 A0A1W2PQL4 384 aaPredicted RBP5.29□□□□□ -1.56
PTPRB-202ENST00000334414 TMEM150CB9EJG8 249 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 TPST2O60704 377 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 SDC3O75056 442 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 LPLP06858 475 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 PRSS3P35030 304 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 GIPRP48546 466 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 MLLT11Q13015 90 aaPredicted RBP5.29□□□□□ -1.56
PTPRB-202ENST00000334414 SLAMF1Q13291 335 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 PRAMEF14Q5SWL7 426 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 MTFR2Q6P444 385 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 HPSE2Q8WWQ2 592 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 OR5P2Q8WZ92 322 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 MSI2Q96DH6 328 aaKnown RBP5.29□□□□□ -1.56
PTPRB-202ENST00000334414 PTGES2Q9H7Z7 377 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 RBFOX1Q9NWB1 397 aaKnown RBP5.29□□□□□ -1.56
PTPRB-202ENST00000334414 ERVK13-1Q9NX77 482 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 PCTPQ9UKL6 214 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 UBE2J1Q9Y385 318 aaPredicted RBP5.29□□□□□ -1.56
PTPRB-202ENST00000334414 DLX3O60479 287 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 MMP2P08253 660 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 CD1EP15812 388 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 PTPN2P17706 415 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 ELK1P19419 428 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 THBS2P35442 1172 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 RSU1Q15404 277 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 OR2T4Q8NH00 348 aa5.29□□□□□ -1.56
PTPRB-202ENST00000334414 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.29□□□□□ -1.56
PTPRB-202ENST00000334414 BRIX1Q8TDN6 353 aaKnown RBP5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms