RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 SLC9B2Q86UD5 537 aa8.65□□□□□ -1.03
MSH4-201ENST00000263187 MMAAQ8IVH4 418 aaKnown RBP8.65□□□□□ -1.03
MSH4-201ENST00000263187 LAS2Q8IYD9 372 aa8.65□□□□□ -1.03
MSH4-201ENST00000263187 POP5Q969H6 163 aaKnown RBP8.65□□□□□ -1.03
MSH4-201ENST00000263187 NACC2Q96BF6 587 aa8.65□□□□□ -1.03
MSH4-201ENST00000263187 C16orf58Q96GQ5 468 aa8.65□□□□□ -1.03
MSH4-201ENST00000263187 RAD9AQ99638 391 aa8.65□□□□□ -1.03
MSH4-201ENST00000263187 EFCAB11Q9BUY7 163 aa8.65□□□□□ -1.03
MSH4-201ENST00000263187 TMED9Q9BVK6 235 aa8.65□□□□□ -1.03
MSH4-201ENST00000263187 LGR4Q9BXB1 951 aa8.65□□□□□ -1.03
MSH4-201ENST00000263187 HDHD5Q9BXW7 423 aa8.65□□□□□ -1.03
MSH4-201ENST00000263187 NXF2Q9GZY0 626 aaKnown RBP8.65□□□□□ -1.03
MSH4-201ENST00000263187 SERHL2Q9H4I8 314 aa8.65□□□□□ -1.03
MSH4-201ENST00000263187 TMEM38AQ9H6F2 299 aa8.65□□□□□ -1.03
MSH4-201ENST00000263187 RMI1Q9H9A7 625 aa8.65□□□□□ -1.03
MSH4-201ENST00000263187 TMEM39AQ9NV64 488 aa8.65□□□□□ -1.03
MSH4-201ENST00000263187 MKLN1Q9UL63 735 aa8.65□□□□□ -1.03
MSH4-201ENST00000263187 KLK4Q9Y5K2 254 aa8.65□□□□□ -1.03
MSH4-201ENST00000263187 CLCA3PQ9Y6N3 262 aa8.65□□□□□ -1.03
MSH4-201ENST00000263187 DOCK9Q9BZ29 2069 aa8.65□□□□□ -1.03
MSH4-201ENST00000263187 COL4A6Q14031 1691 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 FABP12A6NFH5 140 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 E9PQ18 207 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 DVL2O14641 736 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 GUCY1B2O75343 617 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 SEMA3DO95025 777 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 PCCBP05166 539 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 SCG5P05408 212 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 C6P13671 934 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 UQCRC2P22695 453 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 MMP11P24347 488 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 CSTF2P33240 577 aaKnown RBP eCLIP8.64□□□□□ -1.03
MSH4-201ENST00000263187 LIMS1P48059 325 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 HNRNPFP52597 415 aaKnown RBP8.64□□□□□ -1.03
MSH4-201ENST00000263187 EIF4HQ15056 248 aaKnown RBP8.64□□□□□ -1.03
MSH4-201ENST00000263187 TUBA3EQ6PEY2 450 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 LINC00299Q6ZSB3 139 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 GRASPQ7Z6J2 395 aaPredicted RBP8.64□□□□□ -1.03
MSH4-201ENST00000263187 ZER1Q7Z7L7 766 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 OR6T1Q8NGN1 323 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 OR6F1Q8NGZ6 308 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 TFGQ92734 400 aaPredicted RBP8.64□□□□□ -1.03
MSH4-201ENST00000263187 VWCEQ96DN2 955 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 DEPDC7Q96QD5 511 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 GFM1Q96RP9 751 aaKnown RBP8.64□□□□□ -1.03
MSH4-201ENST00000263187 DCLRE1CQ96SD1 692 aaKnown RBP8.64□□□□□ -1.03
MSH4-201ENST00000263187 FNDC11Q9BVV2 318 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 CDCA4Q9BXL8 241 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 OR51I1Q9H343 314 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 SSR3Q9UNL2 185 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 KCNE3Q9Y6H6 103 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 V9GYH0 126 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 LAMA1P25391 3075 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 LCMT2O60294 686 aaKnown RBP8.64□□□□□ -1.03
MSH4-201ENST00000263187 MRPS14O60783 128 aaKnown RBP8.64□□□□□ -1.03
MSH4-201ENST00000263187 APEX1P27695 318 aaKnown RBP8.64□□□□□ -1.03
MSH4-201ENST00000263187 RBBP4Q09028 425 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 TIMM50Q3ZCQ8 353 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 FNDC3BQ53EP0 1204 aaKnown RBP8.64□□□□□ -1.03
MSH4-201ENST00000263187 GPAT3Q53EU6 434 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 SNAP47Q5SQN1 464 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 PDZK1Q5T2W1 519 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 KIAA1161Q6NSJ0 714 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 VASH1Q7L8A9 365 aaPredicted RBP8.64□□□□□ -1.03
MSH4-201ENST00000263187 CAMKMTQ7Z624 323 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 PHC2Q8IXK0 858 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 CCDC116Q8IYX3 515 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 OR4K5Q8NGD3 323 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 ZFPM2Q8WW38 1151 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 TM4SF18Q96CE8 201 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 TIFAQ96CG3 184 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 NELL2Q99435 816 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 TBX5Q99593 518 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 TMEM246Q9BRR3 403 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 SPATA9Q9BWV2 254 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 ZDHHC5Q9C0B5 715 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 MYNNQ9NPC7 610 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 ZCCHC3Q9NUD5 404 aaKnown RBP8.64□□□□□ -1.03
MSH4-201ENST00000263187 SPATA7Q9P0W8 599 aa8.64□□□□□ -1.03
MSH4-201ENST00000263187 CRNNQ9UBG3 495 aaPredicted RBP8.64□□□□□ -1.03
MSH4-201ENST00000263187 C2orf92A0A1B0GVN3 265 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 MEIOCA2RUB1 952 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 CPSF4LA6NMK7 179 aaKnown RBP8.63□□□□□ -1.03
MSH4-201ENST00000263187 PRRT4C9JH25 899 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 FAM47E-STBD1D6RA91 191 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 NDUFB5O43674 189 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 RHOP08100 348 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 ZNF24P17028 368 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 PTX3P26022 381 aaPredicted RBP8.63□□□□□ -1.03
MSH4-201ENST00000263187 SNRPD2P62316 118 aaKnown RBP8.63□□□□□ -1.03
MSH4-201ENST00000263187 BCL2A1Q16548 175 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 MLIPQ5VWP3 458 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 C17orf64Q86WR6 236 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 RAB43Q86YS6 212 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 GHDCQ8N2G8 530 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 ATP6V1C2Q8NEY4 427 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 GOT1L1Q8NHS2 421 aaPredicted RBP8.63□□□□□ -1.03
MSH4-201ENST00000263187 TP53INP1Q96A56 240 aa8.63□□□□□ -1.03
MSH4-201ENST00000263187 ZNF689Q96CS4 500 aaPredicted RBP8.63□□□□□ -1.03
MSH4-201ENST00000263187 NUS1Q96E22 293 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms