RNA–Protein interactions for RNA: ENST00000640652.1

SCN3A-210, Transcript of sodium voltage-gated channel alpha subunit 3, humanhuman

TSL 5

Gene SCN3A, Length 8,825 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3A-210ENST00000640652 TRIM5Q9C035 493 aa6.6□□□□□ -1.35
SCN3A-210ENST00000640652 ADGRL3Q9HAR2 1447 aa6.6□□□□□ -1.35
SCN3A-210ENST00000640652 HSP90AB2PQ58FF8 381 aa6.6□□□□□ -1.35
SCN3A-210ENST00000640652 ANKARQ7Z5J8 1434 aa6.6□□□□□ -1.35
SCN3A-210ENST00000640652 OFD1O75665 1012 aa6.6□□□□□ -1.35
SCN3A-210ENST00000640652 GSPT1P15170 499 aaKnown RBP6.6□□□□□ -1.35
SCN3A-210ENST00000640652 BLOC1S2Q6QNY1 142 aa6.6□□□□□ -1.35
SCN3A-210ENST00000640652 SPATA32Q96LK8 384 aa6.6□□□□□ -1.35
SCN3A-210ENST00000640652 NUP62CLQ9H1M0 184 aa6.6□□□□□ -1.35
SCN3A-210ENST00000640652 OSBPL3Q9H4L5 887 aa6.6□□□□□ -1.35
SCN3A-210ENST00000640652 USP54Q70EL1 1684 aa6.6□□□□□ -1.35
SCN3A-210ENST00000640652 ZSCAN22P10073 491 aaPredicted RBP6.6□□□□□ -1.35
SCN3A-210ENST00000640652 ATP8B2P98198 1209 aa6.6□□□□□ -1.35
SCN3A-210ENST00000640652 PPP1R42Q7Z4L9 355 aa6.6□□□□□ -1.35
SCN3A-210ENST00000640652 JAKMIP1Q96N16 626 aaKnown RBP6.6□□□□□ -1.35
SCN3A-210ENST00000640652 PLEKHG5O94827 1062 aa6.59□□□□□ -1.35
SCN3A-210ENST00000640652 RIC3Q7Z5B4 369 aa6.59□□□□□ -1.35
SCN3A-210ENST00000640652 RRAGDQ9NQL2 400 aaPredicted RBP6.59□□□□□ -1.35
SCN3A-210ENST00000640652 PRIM1P49642 420 aaKnown RBP6.59□□□□□ -1.35
SCN3A-210ENST00000640652 UPF3BQ9BZI7 483 aaKnown RBP6.59□□□□□ -1.35
SCN3A-210ENST00000640652 SIPA1L3O60292 1781 aaPredicted RBP6.59□□□□□ -1.35
SCN3A-210ENST00000640652 CSB-PGBD3P0DP91 1061 aa6.59□□□□□ -1.35
SCN3A-210ENST00000640652 FBLN1P23142 703 aa6.59□□□□□ -1.35
SCN3A-210ENST00000640652 CHMLP26374 656 aa6.59□□□□□ -1.35
SCN3A-210ENST00000640652 SF3A1Q15459 793 aaKnown RBP6.59□□□□□ -1.35
SCN3A-210ENST00000640652 NCAPD2Q15021 1401 aa6.59□□□□□ -1.35
SCN3A-210ENST00000640652 HMGB1P09429 215 aaKnown RBP6.59□□□□□ -1.35
SCN3A-210ENST00000640652 VPS53Q5VIR6 699 aa6.59□□□□□ -1.36
SCN3A-210ENST00000640652 ECHDC1Q9NTX5 307 aa6.59□□□□□ -1.36
SCN3A-210ENST00000640652 RAPGEF4Q8WZA2 1011 aa6.59□□□□□ -1.36
SCN3A-210ENST00000640652 KIF2AO00139 706 aaPredicted RBP6.58□□□□□ -1.36
SCN3A-210ENST00000640652 CPLX1O14810 134 aa6.58□□□□□ -1.36
SCN3A-210ENST00000640652 NUTM2GQ5VZR2 741 aa6.58□□□□□ -1.36
SCN3A-210ENST00000640652 PPP1R9BQ96SB3 815 aa6.58□□□□□ -1.36
SCN3A-210ENST00000640652 RBM42Q9BTD8 480 aaKnown RBP6.58□□□□□ -1.36
SCN3A-210ENST00000640652 SLIT1O75093 1534 aa6.58□□□□□ -1.36
SCN3A-210ENST00000640652 ATP10DQ9P241 1426 aa6.58□□□□□ -1.36
SCN3A-210ENST00000640652 CTAGE5O15320 804 aa6.58□□□□□ -1.36
SCN3A-210ENST00000640652 LMBRD1Q9NUN5 540 aa6.58□□□□□ -1.36
SCN3A-210ENST00000640652 CPLX2Q6PUV4 134 aaKnown RBP6.58□□□□□ -1.36
SCN3A-210ENST00000640652 ARID3AQ99856 593 aa6.58□□□□□ -1.36
SCN3A-210ENST00000640652 BAZ2AQ9UIF9 1905 aaKnown RBP6.58□□□□□ -1.36
SCN3A-210ENST00000640652 METP08581 1390 aa6.58□□□□□ -1.36
SCN3A-210ENST00000640652 ADCY5O95622 1261 aa6.58□□□□□ -1.36
SCN3A-210ENST00000640652 LARP1Q6PKG0 1096 aaKnown RBP6.58□□□□□ -1.36
SCN3A-210ENST00000640652 NUTM1Q86Y26 1132 aa6.58□□□□□ -1.36
SCN3A-210ENST00000640652 ZGPATQ8N5A5 531 aaKnown RBP6.58□□□□□ -1.36
SCN3A-210ENST00000640652 IL1RAPL2Q9NP60 686 aa6.58□□□□□ -1.36
SCN3A-210ENST00000640652 AMOTL2Q9Y2J4 779 aa6.58□□□□□ -1.36
SCN3A-210ENST00000640652 DDX19AQ9NUU7 478 aaKnown RBP6.57□□□□□ -1.36
SCN3A-210ENST00000640652 MAP3K19Q56UN5 1328 aa6.57□□□□□ -1.36
SCN3A-210ENST00000640652 TAF7LQ5H9L4 462 aa6.57□□□□□ -1.36
SCN3A-210ENST00000640652 JMYQ8N9B5 988 aa6.57□□□□□ -1.36
SCN3A-210ENST00000640652 OVOS2A0A0J9YW53 1432 aa6.57□□□□□ -1.36
SCN3A-210ENST00000640652 OVOS2Q6IE36 1432 aa6.57□□□□□ -1.36
SCN3A-210ENST00000640652 TSHZ3Q63HK5 1081 aa6.57□□□□□ -1.36
SCN3A-210ENST00000640652 PARP4Q9UKK3 1724 aaKnown RBP6.57□□□□□ -1.36
SCN3A-210ENST00000640652 NEMFO60524 1076 aa6.57□□□□□ -1.36
SCN3A-210ENST00000640652 TRDNQ13061 729 aa6.57□□□□□ -1.36
SCN3A-210ENST00000640652 RALYLQ86SE5 291 aaKnown RBP6.57□□□□□ -1.36
SCN3A-210ENST00000640652 RHPN1Q8TCX5 695 aa6.57□□□□□ -1.36
SCN3A-210ENST00000640652 USP25Q9UHP3 1055 aa6.57□□□□□ -1.36
SCN3A-210ENST00000640652 U3KPZ7 1027 aaPredicted RBP6.57□□□□□ -1.36
SCN3A-210ENST00000640652 RBM27Q9P2N5 1060 aaKnown RBP6.57□□□□□ -1.36
SCN3A-210ENST00000640652 XPCQ01831 940 aaPredicted RBP6.57□□□□□ -1.36
SCN3A-210ENST00000640652 SYNE3Q6ZMZ3 975 aa6.57□□□□□ -1.36
SCN3A-210ENST00000640652 MAP4K4O95819 1239 aaPredicted RBP6.56□□□□□ -1.36
SCN3A-210ENST00000640652 PRPF40BQ6NWY9 871 aaKnown RBP6.56□□□□□ -1.36
SCN3A-210ENST00000640652 USP48Q86UV5 1035 aa6.56□□□□□ -1.36
SCN3A-210ENST00000640652 CEP57L1Q8IYX8 460 aa6.56□□□□□ -1.36
SCN3A-210ENST00000640652 ZNF500O60304 480 aaPredicted RBP6.56□□□□□ -1.36
SCN3A-210ENST00000640652 ALDH1L1O75891 902 aa6.56□□□□□ -1.36
SCN3A-210ENST00000640652 F13A1P00488 732 aa6.56□□□□□ -1.36
SCN3A-210ENST00000640652 GJB2P29033 226 aa6.56□□□□□ -1.36
SCN3A-210ENST00000640652 HSPA4P34932 840 aa6.56□□□□□ -1.36
SCN3A-210ENST00000640652 ZSCAN16Q9H4T2 348 aaPredicted RBP6.56□□□□□ -1.36
SCN3A-210ENST00000640652 CHPF2Q9P2E5 772 aa6.56□□□□□ -1.36
SCN3A-210ENST00000640652 NUP98P52948 1817 aa6.56□□□□□ -1.36
SCN3A-210ENST00000640652 FAM200AQ8TCP9 573 aa6.56□□□□□ -1.36
SCN3A-210ENST00000640652 SLC26A8Q96RN1 970 aa6.56□□□□□ -1.36
SCN3A-210ENST00000640652 PLEKHG3A1L390 1219 aa6.56□□□□□ -1.36
SCN3A-210ENST00000640652 MTHFSDQ2M296 383 aaKnown RBP6.56□□□□□ -1.36
SCN3A-210ENST00000640652 OTUD7AQ8TE49 926 aaPredicted RBP6.56□□□□□ -1.36
SCN3A-210ENST00000640652 KDRP35968 1356 aa6.56□□□□□ -1.36
SCN3A-210ENST00000640652 CDKL5O76039 1030 aa6.56□□□□□ -1.36
SCN3A-210ENST00000640652 ESCO1Q5FWF5 840 aa6.56□□□□□ -1.36
SCN3A-210ENST00000640652 CDK11BP21127 795 aaKnown RBP6.56□□□□□ -1.36
SCN3A-210ENST00000640652 TAF3Q5VWG9 929 aa6.56□□□□□ -1.36
SCN3A-210ENST00000640652 SPG7Q9UQ90 795 aa6.56□□□□□ -1.36
SCN3A-210ENST00000640652 CD2BP2O95400 341 aaKnown RBP6.56□□□□□ -1.36
SCN3A-210ENST00000640652 C16orf71Q8IYS4 520 aaPredicted RBP6.56□□□□□ -1.36
SCN3A-210ENST00000640652 ARGLU1Q9NWB6 273 aaPredicted RBP6.56□□□□□ -1.36
SCN3A-210ENST00000640652 STX1AQ16623 288 aa6.55□□□□□ -1.36
SCN3A-210ENST00000640652 TRIM29Q14134 588 aa6.55□□□□□ -1.36
SCN3A-210ENST00000640652 SIRT2Q8IXJ6 389 aa6.55□□□□□ -1.36
SCN3A-210ENST00000640652 STAP2Q9UGK3 403 aa6.55□□□□□ -1.36
SCN3A-210ENST00000640652 CNPY2Q9Y2B0 182 aa6.55□□□□□ -1.36
SCN3A-210ENST00000640652 USP31Q70CQ4 1352 aa6.55□□□□□ -1.36
SCN3A-210ENST00000640652 BRD1O95696 1058 aa6.55□□□□□ -1.36
SCN3A-210ENST00000640652 SPC24Q8NBT2 197 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms