RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 CCNA1P78396 465 aa5.92□□□□□ -1.46
SCN1A-218ENST00000640036 CFAP43Q8NDM7 1665 aa5.92□□□□□ -1.46
SCN1A-218ENST00000640036 BIRC2Q13490 618 aa5.92□□□□□ -1.46
SCN1A-218ENST00000640036 DDX17Q92841 729 aaKnown RBP5.92□□□□□ -1.46
SCN1A-218ENST00000640036 PPIP5K1Q6PFW1 1433 aa5.92□□□□□ -1.46
SCN1A-218ENST00000640036 TTF1Q15361 905 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-218ENST00000640036 CCDC129Q6ZRS4 1044 aa5.91□□□□□ -1.46
SCN1A-218ENST00000640036 TTC16Q8NEE8 873 aa5.91□□□□□ -1.46
SCN1A-218ENST00000640036 RNF41Q9H4P4 317 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-218ENST00000640036 SAMM50Q9Y512 469 aa5.91□□□□□ -1.46
SCN1A-218ENST00000640036 MYCP01106 439 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-218ENST00000640036 ANKRD13DQ6ZTN6 518 aa5.91□□□□□ -1.46
SCN1A-218ENST00000640036 C14orf93Q9H972 538 aaKnown RBP5.91□□□□□ -1.46
SCN1A-218ENST00000640036 AKAP4Q5JQC9 854 aa5.91□□□□□ -1.46
SCN1A-218ENST00000640036 RTKN2Q8IZC4 609 aa5.91□□□□□ -1.46
SCN1A-218ENST00000640036 TAOK3Q9H2K8 898 aa5.91□□□□□ -1.46
SCN1A-218ENST00000640036 SRGAP3O43295 1099 aa5.91□□□□□ -1.46
SCN1A-218ENST00000640036 FMNL1O95466 1100 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-218ENST00000640036 UQCRFS1P1P0C7P4 283 aa5.91□□□□□ -1.46
SCN1A-218ENST00000640036 PICALMQ13492 652 aa5.91□□□□□ -1.46
SCN1A-218ENST00000640036 FAM47CQ5HY64 1035 aa5.91□□□□□ -1.46
SCN1A-218ENST00000640036 ARHGEF10LQ9HCE6 1279 aa5.91□□□□□ -1.46
SCN1A-218ENST00000640036 ATP5J2-PTCD1G3V325 749 aa5.9□□□□□ -1.46
SCN1A-218ENST00000640036 IREB2P48200 963 aaKnown RBP5.9□□□□□ -1.46
SCN1A-218ENST00000640036 FAM161AQ3B820 660 aa5.9□□□□□ -1.46
SCN1A-218ENST00000640036 NFATC2IPQ8NCF5 419 aa5.9□□□□□ -1.46
SCN1A-218ENST00000640036 CTCFLQ8NI51 663 aaPredicted RBP5.9□□□□□ -1.46
SCN1A-218ENST00000640036 ZMYND15Q9H091 742 aa5.9□□□□□ -1.46
SCN1A-218ENST00000640036 GRIPAP1Q4V328 841 aa5.9□□□□□ -1.46
SCN1A-218ENST00000640036 RANBP6O60518 1105 aaKnown RBP5.9□□□□□ -1.46
SCN1A-218ENST00000640036 KCNA4P22459 653 aa5.9□□□□□ -1.46
SCN1A-218ENST00000640036 NOM1Q5C9Z4 860 aaKnown RBP5.9□□□□□ -1.46
SCN1A-218ENST00000640036 IP6K1Q92551 441 aa5.9□□□□□ -1.46
SCN1A-218ENST00000640036 NOL7Q9UMY1 257 aaKnown RBP5.9□□□□□ -1.46
SCN1A-218ENST00000640036 PEG3Q9GZU2 1588 aa5.9□□□□□ -1.47
SCN1A-218ENST00000640036 SSBP05455 408 aaKnown RBP eCLIP5.9□□□□□ -1.47
SCN1A-218ENST00000640036 DUSP27Q5VZP5 1158 aa5.9□□□□□ -1.47
SCN1A-218ENST00000640036 PPP2R3CQ969Q6 453 aa5.9□□□□□ -1.47
SCN1A-218ENST00000640036 FBXO3Q9UK99 471 aa5.9□□□□□ -1.47
SCN1A-218ENST00000640036 MYO6Q9UM54 1294 aa5.9□□□□□ -1.47
SCN1A-218ENST00000640036 NCOA1Q15788 1441 aa5.9□□□□□ -1.47
SCN1A-218ENST00000640036 LDHBP07195 334 aaKnown RBP5.9□□□□□ -1.47
SCN1A-218ENST00000640036 HACE1Q8IYU2 909 aa5.9□□□□□ -1.47
SCN1A-218ENST00000640036 PRC1O43663 620 aa5.9□□□□□ -1.47
SCN1A-218ENST00000640036 ATP2B1P20020 1258 aa5.9□□□□□ -1.47
SCN1A-218ENST00000640036 CCDC178Q5BJE1 867 aa5.9□□□□□ -1.47
SCN1A-218ENST00000640036 GADL1Q6ZQY3 521 aa5.9□□□□□ -1.47
SCN1A-218ENST00000640036 RAB34Q9BZG1 259 aa5.9□□□□□ -1.47
SCN1A-218ENST00000640036 POTEJP0CG39 1038 aa5.89□□□□□ -1.47
SCN1A-218ENST00000640036 DCTN1Q14203 1278 aa5.89□□□□□ -1.47
SCN1A-218ENST00000640036 ADAMTS12P58397 1594 aa5.89□□□□□ -1.47
SCN1A-218ENST00000640036 ZEB2O60315 1214 aa5.89□□□□□ -1.47
SCN1A-218ENST00000640036 BAG4O95429 457 aaKnown RBP5.89□□□□□ -1.47
SCN1A-218ENST00000640036 SLC27A3Q5K4L6 730 aa5.89□□□□□ -1.47
SCN1A-218ENST00000640036 TMEM2Q9UHN6 1383 aa5.89□□□□□ -1.47
SCN1A-218ENST00000640036 SCAF11Q99590 1463 aaKnown RBP5.89□□□□□ -1.47
SCN1A-218ENST00000640036 CCDC196A0A1B0GTZ2 297 aa5.89□□□□□ -1.47
SCN1A-218ENST00000640036 TSPY2A6NKD2 308 aa5.89□□□□□ -1.47
SCN1A-218ENST00000640036 AACSQ86V21 672 aa5.89□□□□□ -1.47
SCN1A-218ENST00000640036 SLC16A10Q8TF71 515 aa5.89□□□□□ -1.47
SCN1A-218ENST00000640036 ZBED2Q9BTP6 218 aa5.89□□□□□ -1.47
SCN1A-218ENST00000640036 CHMP5Q9NZZ3 219 aa5.89□□□□□ -1.47
SCN1A-218ENST00000640036 UGGT1Q9NYU2 1555 aa5.89□□□□□ -1.47
SCN1A-218ENST00000640036 CDKL5O76039 1030 aa5.89□□□□□ -1.47
SCN1A-218ENST00000640036 CCDC12Q8WUD4 166 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-218ENST00000640036 NAP1L5Q96NT1 182 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-218ENST00000640036 PNMA3Q9UL41 463 aa5.89□□□□□ -1.47
SCN1A-218ENST00000640036 ABCC5O15440 1437 aa5.89□□□□□ -1.47
SCN1A-218ENST00000640036 OSBPP22059 807 aa5.89□□□□□ -1.47
SCN1A-218ENST00000640036 UBXN2AP68543 259 aa5.89□□□□□ -1.47
SCN1A-218ENST00000640036 TTC6Q86TZ1 520 aa5.89□□□□□ -1.47
SCN1A-218ENST00000640036 CERS3Q8IU89 383 aa5.89□□□□□ -1.47
SCN1A-218ENST00000640036 ADGRF5Q8IZF2 1346 aa5.89□□□□□ -1.47
SCN1A-218ENST00000640036 COA7Q96BR5 231 aa5.88□□□□□ -1.47
SCN1A-218ENST00000640036 NR1I2O75469 434 aa5.88□□□□□ -1.47
SCN1A-218ENST00000640036 UBE3BQ7Z3V4 1068 aa5.88□□□□□ -1.47
SCN1A-218ENST00000640036 KCNH4Q9UQ05 1017 aa5.88□□□□□ -1.47
SCN1A-218ENST00000640036 NR2E3Q9Y5X4 410 aa5.88□□□□□ -1.47
SCN1A-218ENST00000640036 RAD50Q92878 1312 aa5.88□□□□□ -1.47
SCN1A-218ENST00000640036 SH3TC1Q8TE82 1336 aa5.88□□□□□ -1.47
SCN1A-218ENST00000640036 IMMTQ16891 758 aaKnown RBP5.88□□□□□ -1.47
SCN1A-218ENST00000640036 DHX37Q8IY37 1157 aaKnown RBP5.88□□□□□ -1.47
SCN1A-218ENST00000640036 TBC1D22AQ8WUA7 517 aa5.88□□□□□ -1.47
SCN1A-218ENST00000640036 NOP56O00567 594 aaKnown RBP5.88□□□□□ -1.47
SCN1A-218ENST00000640036 KIF5BP33176 963 aa5.88□□□□□ -1.47
SCN1A-218ENST00000640036 NAA16Q6N069 864 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-218ENST00000640036 TMC4Q7Z404 712 aa5.88□□□□□ -1.47
SCN1A-218ENST00000640036 DPP9Q86TI2 863 aa5.88□□□□□ -1.47
SCN1A-218ENST00000640036 GPATCH8Q9UKJ3 1502 aaKnown RBP5.88□□□□□ -1.47
SCN1A-218ENST00000640036 NUP160Q12769 1436 aa5.88□□□□□ -1.47
SCN1A-218ENST00000640036 FAM182BQ5T319 152 aa5.88□□□□□ -1.47
SCN1A-218ENST00000640036 CTTNBP2Q8WZ74 1663 aa5.88□□□□□ -1.47
SCN1A-218ENST00000640036 SYCP2Q9BX26 1530 aa5.88□□□□□ -1.47
SCN1A-218ENST00000640036 MMP10P09238 476 aa5.88□□□□□ -1.47
SCN1A-218ENST00000640036 MCM10Q7L590 875 aa5.88□□□□□ -1.47
SCN1A-218ENST00000640036 STX8Q9UNK0 236 aa5.88□□□□□ -1.47
SCN1A-218ENST00000640036 CCER2I3L3R5 266 aa5.88□□□□□ -1.47
SCN1A-218ENST00000640036 IRS4O14654 1257 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-218ENST00000640036 CCDC82Q8N4S0 544 aa5.88□□□□□ -1.47
SCN1A-218ENST00000640036 RAET1EQ8TD07 263 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms