RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 STYK1Q6J9G0 422 aa26■■□□□ 1.75
CLN3-262ENST00000637699 PRPF40BQ6NWY9 871 aaKnown RBP26■■□□□ 1.75
CLN3-262ENST00000637699 CFAP53Q96M91 514 aa26■■□□□ 1.75
CLN3-262ENST00000637699 RSPH6AQ9H0K4 717 aa26■■□□□ 1.75
CLN3-262ENST00000637699 LTBP3Q9NS15 1303 aa25.99■■□□□ 1.75
CLN3-262ENST00000637699 DICER1Q9UPY3 1922 aaKnown RBP25.99■■□□□ 1.75
CLN3-262ENST00000637699 PRAMEF22A3QJZ6 481 aa25.99■■□□□ 1.75
CLN3-262ENST00000637699 SLX4Q8IY92 1834 aa25.99■■□□□ 1.75
CLN3-262ENST00000637699 CAPN15O75808 1086 aa25.98■■□□□ 1.75
CLN3-262ENST00000637699 DDNO94850 711 aaPredicted RBP25.98■■□□□ 1.75
CLN3-262ENST00000637699 TNS4Q8IZW8 715 aa25.98■■□□□ 1.75
CLN3-262ENST00000637699 MASTLQ96GX5 879 aa25.98■■□□□ 1.75
CLN3-262ENST00000637699 HSPA1AP0DMV8 641 aaKnown RBP25.97■■□□□ 1.75
CLN3-262ENST00000637699 HSPA1BP0DMV9 641 aaKnown RBP25.97■■□□□ 1.75
CLN3-262ENST00000637699 CACNA1SQ13698 1873 aa25.96■■□□□ 1.75
CLN3-262ENST00000637699 MCM10Q7L590 875 aa25.96■■□□□ 1.75
CLN3-262ENST00000637699 NBPF5PQ86XG9 351 aaPredicted RBP25.96■■□□□ 1.75
CLN3-262ENST00000637699 SNRPA1P09661 255 aaKnown RBP25.95■■□□□ 1.74
CLN3-262ENST00000637699 SOGA3Q5TF21 947 aa25.95■■□□□ 1.74
CLN3-262ENST00000637699 CHADLQ6NUI6 762 aa25.95■■□□□ 1.74
CLN3-262ENST00000637699 RTF1Q92541 710 aaKnown RBP25.95■■□□□ 1.74
CLN3-262ENST00000637699 NUDCQ9Y266 331 aa25.95■■□□□ 1.74
CLN3-262ENST00000637699 BCORQ6W2J9 1755 aa25.95■■□□□ 1.74
CLN3-262ENST00000637699 POTEIP0CG38 1075 aa25.94■■□□□ 1.74
CLN3-262ENST00000637699 POTEJP0CG39 1038 aa25.94■■□□□ 1.74
CLN3-262ENST00000637699 U2AF1L5P0DN76 240 aaPredicted RBP25.94■■□□□ 1.74
CLN3-262ENST00000637699 U2AF1Q01081 240 aaKnown RBP eCLIP25.94■■□□□ 1.74
CLN3-262ENST00000637699 CLEC4GQ6UXB4 293 aa25.94■■□□□ 1.74
CLN3-262ENST00000637699 ZNF652Q9Y2D9 606 aa25.93■■□□□ 1.74
CLN3-262ENST00000637699 DCTN1Q14203 1278 aa25.92■■□□□ 1.74
CLN3-262ENST00000637699 C7orf43Q8WVR3 580 aa25.91■■□□□ 1.74
CLN3-262ENST00000637699 FAM177BA6PVY3 158 aa25.9■■□□□ 1.74
CLN3-262ENST00000637699 NPR1P16066 1061 aa25.9■■□□□ 1.74
CLN3-262ENST00000637699 CCDC93Q567U6 631 aa25.9■■□□□ 1.74
CLN3-262ENST00000637699 NIP7Q9Y221 180 aaKnown RBP eCLIP25.9■■□□□ 1.74
CLN3-262ENST00000637699 NBPF26B4DH59 902 aa25.89■■□□□ 1.74
CLN3-262ENST00000637699 NBPF10Q6P3W6 841 aaKnown RBP25.89■■□□□ 1.74
CLN3-262ENST00000637699 TPTE2Q6XPS3 522 aa25.89■■□□□ 1.74
CLN3-262ENST00000637699 NBPF15Q8N660 670 aa25.89■■□□□ 1.74
CLN3-262ENST00000637699 CREBZFQ9NS37 354 aa25.89■■□□□ 1.74
CLN3-262ENST00000637699 MKRN1Q9UHC7 482 aaKnown RBP25.89■■□□□ 1.74
CLN3-262ENST00000637699 ARFGEF2Q9Y6D5 1785 aa25.88■■□□□ 1.73
CLN3-262ENST00000637699 PPP2R1AP30153 589 aa25.88■■□□□ 1.73
CLN3-262ENST00000637699 OLFM4Q6UX06 510 aa25.87■■□□□ 1.73
CLN3-262ENST00000637699 KLRG2A4D1S0 409 aaPredicted RBP25.86■■□□□ 1.73
CLN3-262ENST00000637699 IQCA1LA6NCM1 817 aa25.86■■□□□ 1.73
CLN3-262ENST00000637699 ZNF277Q9NRM2 450 aaPredicted RBP25.86■■□□□ 1.73
CLN3-262ENST00000637699 FKBP4Q02790 459 aaKnown RBP eCLIP25.85■■□□□ 1.73
CLN3-262ENST00000637699 TAF1DQ9H5J8 278 aaPredicted RBP25.85■■□□□ 1.73
CLN3-262ENST00000637699 MIS18AQ9NYP9 233 aa25.85■■□□□ 1.73
CLN3-262ENST00000637699 TAF7Q15545 349 aaPredicted RBP25.84■■□□□ 1.73
CLN3-262ENST00000637699 HLFQ16534 295 aa25.84■■□□□ 1.73
CLN3-262ENST00000637699 LDHDQ86WU2 507 aa25.84■■□□□ 1.73
CLN3-262ENST00000637699 L3MBTL3Q96JM7 780 aaPredicted RBP25.84■■□□□ 1.73
CLN3-262ENST00000637699 HTATSF1O43719 755 aaKnown RBP25.83■■□□□ 1.73
CLN3-262ENST00000637699 GTF2E1P29083 439 aaPredicted RBP25.83■■□□□ 1.73
CLN3-262ENST00000637699 EAPPQ56P03 285 aaPredicted RBP25.82■■□□□ 1.72
CLN3-262ENST00000637699 RTKN2Q8IZC4 609 aa25.82■■□□□ 1.72
CLN3-262ENST00000637699 NGEFQ8N5V2 710 aa25.82■■□□□ 1.72
CLN3-262ENST00000637699 ZNF541Q9H0D2 1346 aa25.82■■□□□ 1.72
CLN3-262ENST00000637699 RGL2O15211 777 aa25.81■■□□□ 1.72
CLN3-262ENST00000637699 ALDH1B1P30837 517 aa25.8■■□□□ 1.72
CLN3-262ENST00000637699 PASKQ96RG2 1323 aa25.8■■□□□ 1.72
CLN3-262ENST00000637699 SCN4AP35499 1836 aa25.79■■□□□ 1.72
CLN3-262ENST00000637699 SYNE4Q8N205 404 aa25.79■■□□□ 1.72
CLN3-262ENST00000637699 HACL1Q9UJ83 578 aa25.79■■□□□ 1.72
CLN3-262ENST00000637699 CLEC11AQ9Y240 323 aa25.79■■□□□ 1.72
CLN3-262ENST00000637699 IARSP41252 1262 aaKnown RBP25.77■■□□□ 1.72
CLN3-262ENST00000637699 CNTNAP1P78357 1384 aa25.77■■□□□ 1.72
CLN3-262ENST00000637699 ITGBL1O95965 494 aaPredicted RBP25.76■■□□□ 1.71
CLN3-262ENST00000637699 EPHX2P34913 555 aa25.76■■□□□ 1.71
CLN3-262ENST00000637699 NUTM1Q86Y26 1132 aa25.76■■□□□ 1.71
CLN3-262ENST00000637699 TMEM88BA6NKF7 163 aa25.75■■□□□ 1.71
CLN3-262ENST00000637699 RRP7AQ9Y3A4 280 aaKnown RBP25.75■■□□□ 1.71
CLN3-262ENST00000637699 ABCC12Q96J65 1359 aa25.74■■□□□ 1.71
CLN3-262ENST00000637699 RNF123Q5XPI4 1314 aa25.74■■□□□ 1.71
CLN3-262ENST00000637699 FZD9O00144 591 aa25.74■■□□□ 1.71
CLN3-262ENST00000637699 FOXN1O15353 648 aa25.74■■□□□ 1.71
CLN3-262ENST00000637699 NYXQ9GZU5 481 aa25.74■■□□□ 1.71
CLN3-262ENST00000637699 NEFMP07197 916 aa25.73■■□□□ 1.71
CLN3-262ENST00000637699 ERVV-1B6SEH8 477 aa25.72■■□□□ 1.71
CLN3-262ENST00000637699 MYL6BP14649 208 aa25.72■■□□□ 1.71
CLN3-262ENST00000637699 VEGFBP49765 207 aa25.72■■□□□ 1.71
CLN3-262ENST00000637699 CRY2Q49AN0 593 aa25.72■■□□□ 1.71
CLN3-262ENST00000637699 TTLL7Q6ZT98 887 aa25.72■■□□□ 1.71
CLN3-262ENST00000637699 PNISRQ8TF01 805 aaKnown RBP25.72■■□□□ 1.71
CLN3-262ENST00000637699 MAP3K15Q6ZN16 1313 aa25.71■■□□□ 1.71
CLN3-262ENST00000637699 GPTP24298 496 aa25.71■■□□□ 1.71
CLN3-262ENST00000637699 MAP1SQ66K74 1059 aaPredicted RBP25.71■■□□□ 1.71
CLN3-262ENST00000637699 KIF6Q6ZMV9 814 aa25.71■■□□□ 1.71
CLN3-262ENST00000637699 PNMA8AQ86V59 439 aaPredicted RBP25.71■■□□□ 1.71
CLN3-262ENST00000637699 GPC2Q8N158 579 aa25.71■■□□□ 1.71
CLN3-262ENST00000637699 JDP2Q8WYK2 163 aa25.71■■□□□ 1.71
CLN3-262ENST00000637699 RPGRQ92834 1020 aaKnown RBP25.71■■□□□ 1.71
CLN3-262ENST00000637699 LAMB4A4D0S4 1761 aa25.71■■□□□ 1.71
CLN3-262ENST00000637699 EIF4A1P60842 406 aaKnown RBP25.7■■□□□ 1.7
CLN3-262ENST00000637699 CNTROBQ8N137 903 aa25.7■■□□□ 1.7
CLN3-262ENST00000637699 PSMD1Q99460 953 aa25.7■■□□□ 1.7
CLN3-262ENST00000637699 THUMPD2Q9BTF0 503 aaKnown RBP25.7■■□□□ 1.7
CLN3-262ENST00000637699 GJA3Q9Y6H8 435 aa25.7■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms