RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 POLRMTO00411 1230 aaKnown RBP23.65■■□□□ 1.38
CLN3-259ENST00000637551 PDIA6Q15084 440 aa23.65■■□□□ 1.38
CLN3-259ENST00000637551 HDGFL1Q5TGJ6 251 aa23.65■■□□□ 1.38
CLN3-259ENST00000637551 MYH16Q9H6N6 1097 aa23.65■■□□□ 1.38
CLN3-259ENST00000637551 GPBP1L1Q9HC44 474 aaPredicted RBP23.65■■□□□ 1.38
CLN3-259ENST00000637551 TGFB2P61812 414 aa23.64■■□□□ 1.37
CLN3-259ENST00000637551 NFIXQ14938 502 aa23.64■■□□□ 1.37
CLN3-259ENST00000637551 KIF6Q6ZMV9 814 aa23.64■■□□□ 1.37
CLN3-259ENST00000637551 TBC1D2BQ9UPU7 963 aa23.64■■□□□ 1.37
CLN3-259ENST00000637551 ZNF330Q9Y3S2 320 aaPredicted RBP23.64■■□□□ 1.37
CLN3-259ENST00000637551 IBTKQ9P2D0 1353 aaPredicted RBP23.64■■□□□ 1.37
CLN3-259ENST00000637551 MAP3K15Q6ZN16 1313 aa23.63■■□□□ 1.37
CLN3-259ENST00000637551 DDR1Q08345 913 aa23.63■■□□□ 1.37
CLN3-259ENST00000637551 KIAA1551Q9HCM1 1747 aa23.63■■□□□ 1.37
CLN3-259ENST00000637551 HYPKQ9NX55 129 aa23.63■■□□□ 1.37
CLN3-259ENST00000637551 MIER1Q8N108 512 aa23.62■■□□□ 1.37
CLN3-259ENST00000637551 PDZRN3Q9UPQ7 1066 aa23.62■■□□□ 1.37
CLN3-259ENST00000637551 FANCIQ9NVI1 1328 aa23.61■■□□□ 1.37
CLN3-259ENST00000637551 ANKRD36CQ5JPF3 1778 aa23.61■■□□□ 1.37
CLN3-259ENST00000637551 EIF2S2P20042 333 aaKnown RBP23.61■■□□□ 1.37
CLN3-259ENST00000637551 ADCY9O60503 1353 aa23.61■■□□□ 1.37
CLN3-259ENST00000637551 GOLGA2Q08379 1002 aa23.6■■□□□ 1.37
CLN3-259ENST00000637551 KRT24Q2M2I5 525 aa23.6■■□□□ 1.37
CLN3-259ENST00000637551 CCDC30Q5VVM6 783 aa23.6■■□□□ 1.37
CLN3-259ENST00000637551 SETDB2Q96T68 719 aa23.6■■□□□ 1.37
CLN3-259ENST00000637551 BRCA1P38398 1863 aaKnown RBP23.6■■□□□ 1.37
CLN3-259ENST00000637551 DLEC1Q9Y238 1755 aa23.58■■□□□ 1.37
CLN3-259ENST00000637551 PXDNLA1KZ92 1463 aa23.58■■□□□ 1.37
CLN3-259ENST00000637551 PIP4K2AP48426 406 aaPredicted RBP23.58■■□□□ 1.37
CLN3-259ENST00000637551 HSP90AB3PQ58FF7 597 aa23.58■■□□□ 1.37
CLN3-259ENST00000637551 TBC1D9BQ66K14 1250 aa23.58■■□□□ 1.37
CLN3-259ENST00000637551 GIGYF2Q6Y7W6 1299 aaKnown RBP23.58■■□□□ 1.37
CLN3-259ENST00000637551 C8orf58Q8NAV2 365 aa23.58■■□□□ 1.37
CLN3-259ENST00000637551 RIC1Q4ADV7 1423 aa23.58■■□□□ 1.36
CLN3-259ENST00000637551 RNF123Q5XPI4 1314 aa23.58■■□□□ 1.36
CLN3-259ENST00000637551 E9PSI1 815 aa23.57■■□□□ 1.36
CLN3-259ENST00000637551 SERPINB2P05120 415 aa23.57■■□□□ 1.36
CLN3-259ENST00000637551 MYL6BP14649 208 aa23.57■■□□□ 1.36
CLN3-259ENST00000637551 TSR2Q969E8 191 aaKnown RBP23.57■■□□□ 1.36
CLN3-259ENST00000637551 CHPF2Q9P2E5 772 aa23.57■■□□□ 1.36
CLN3-259ENST00000637551 TWISTNBQ3B726 338 aaPredicted RBP23.56■■□□□ 1.36
CLN3-259ENST00000637551 PROSER3Q2NL68 480 aa23.55■■□□□ 1.36
CLN3-259ENST00000637551 PARP10Q53GL7 1025 aa23.54■■□□□ 1.36
CLN3-259ENST00000637551 TTLL7Q6ZT98 887 aa23.54■■□□□ 1.36
CLN3-259ENST00000637551 ZNF526Q8TF50 670 aaPredicted RBP23.54■■□□□ 1.36
CLN3-259ENST00000637551 ZNF428Q96B54 188 aa23.54■■□□□ 1.36
CLN3-259ENST00000637551 NYXQ9GZU5 481 aa23.54■■□□□ 1.36
CLN3-259ENST00000637551 COPS6Q7L5N1 327 aa23.53■■□□□ 1.36
CLN3-259ENST00000637551 CNBD1Q8NA66 436 aa23.53■■□□□ 1.36
CLN3-259ENST00000637551 PLBD2Q8NHP8 589 aa23.53■■□□□ 1.36
CLN3-259ENST00000637551 STK31Q9BXU1 1019 aa23.53■■□□□ 1.36
CLN3-259ENST00000637551 NIP7Q9Y221 180 aaKnown RBP eCLIP23.53■■□□□ 1.36
CLN3-259ENST00000637551 ANKRD31Q8N7Z5 1873 aa23.53■■□□□ 1.36
CLN3-259ENST00000637551 ARFGEF2Q9Y6D5 1785 aa23.52■■□□□ 1.36
CLN3-259ENST00000637551 ARFGEF1Q9Y6D6 1849 aa23.52■■□□□ 1.36
CLN3-259ENST00000637551 TPTE2Q6XPS3 522 aa23.52■■□□□ 1.36
CLN3-259ENST00000637551 ZNF34Q8IZ26 560 aa23.52■■□□□ 1.36
CLN3-259ENST00000637551 XAGE3Q8WTP9 111 aa23.52■■□□□ 1.36
CLN3-259ENST00000637551 BRIP1Q9BX63 1249 aa23.52■■□□□ 1.36
CLN3-259ENST00000637551 N4BP2Q86UW6 1770 aaPredicted RBP23.51■■□□□ 1.35
CLN3-259ENST00000637551 ST5P78524 1137 aa23.51■■□□□ 1.35
CLN3-259ENST00000637551 HLFQ16534 295 aa23.51■■□□□ 1.35
CLN3-259ENST00000637551 TSPYL6Q8N831 410 aa23.51■■□□□ 1.35
CLN3-259ENST00000637551 SALL2Q9Y467 1007 aaPredicted RBP23.51■■□□□ 1.35
CLN3-259ENST00000637551 CT47B1P0C2W7 299 aaPredicted RBP23.5■■□□□ 1.35
CLN3-259ENST00000637551 PDE6BP35913 854 aa23.5■■□□□ 1.35
CLN3-259ENST00000637551 PRR5LQ6MZQ0 368 aa23.5■■□□□ 1.35
CLN3-259ENST00000637551 ANKRD13DQ6ZTN6 518 aa23.5■■□□□ 1.35
CLN3-259ENST00000637551 NBPF5PQ86XG9 351 aaPredicted RBP23.5■■□□□ 1.35
CLN3-259ENST00000637551 DDX58O95786 925 aaKnown RBP23.49■■□□□ 1.35
CLN3-259ENST00000637551 BICDL1Q6ZP65 573 aa23.49■■□□□ 1.35
CLN3-259ENST00000637551 ZBTB3Q9H5J0 574 aa23.49■■□□□ 1.35
CLN3-259ENST00000637551 SPINK5Q9NQ38 1064 aaPredicted RBP23.49■■□□□ 1.35
CLN3-259ENST00000637551 ELL2O00472 640 aaPredicted RBP23.48■■□□□ 1.35
CLN3-259ENST00000637551 KIF3CO14782 793 aa23.48■■□□□ 1.35
CLN3-259ENST00000637551 VAMP4O75379 141 aa23.48■■□□□ 1.35
CLN3-259ENST00000637551 SLFN5Q08AF3 891 aa23.48■■□□□ 1.35
CLN3-259ENST00000637551 TRIM28Q13263 835 aaKnown RBP23.48■■□□□ 1.35
CLN3-259ENST00000637551 TRMT2AQ8IZ69 625 aaKnown RBP23.48■■□□□ 1.35
CLN3-259ENST00000637551 NECTIN2Q92692 538 aa23.48■■□□□ 1.35
CLN3-259ENST00000637551 KLRG2A4D1S0 409 aaPredicted RBP23.47■■□□□ 1.35
CLN3-259ENST00000637551 ANXA1P04083 346 aa23.47■■□□□ 1.35
CLN3-259ENST00000637551 EXOSC9Q06265 439 aaKnown RBP23.47■■□□□ 1.35
CLN3-259ENST00000637551 TCIRG1Q13488 830 aa23.47■■□□□ 1.35
CLN3-259ENST00000637551 PPP1R42Q7Z4L9 355 aa23.47■■□□□ 1.35
CLN3-259ENST00000637551 UBN2Q6ZU65 1347 aa23.45■■□□□ 1.34
CLN3-259ENST00000637551 APLP1P51693 650 aa23.45■■□□□ 1.34
CLN3-259ENST00000637551 DNAJC5GQ8N7S2 189 aa23.45■■□□□ 1.34
CLN3-259ENST00000637551 PIM2Q9P1W9 311 aa23.45■■□□□ 1.34
CLN3-259ENST00000637551 NPHP1O15259 732 aa23.44■■□□□ 1.34
CLN3-259ENST00000637551 KCNA3P22001 575 aa23.44■■□□□ 1.34
CLN3-259ENST00000637551 COL11A2P13942 1736 aaPredicted RBP23.44■■□□□ 1.34
CLN3-259ENST00000637551 H0YIN7 160 aa23.43■■□□□ 1.34
CLN3-259ENST00000637551 DPEP1P16444 411 aa23.43■■□□□ 1.34
CLN3-259ENST00000637551 AIMP1Q12904 312 aaKnown RBP23.43■■□□□ 1.34
CLN3-259ENST00000637551 NTSR2O95665 410 aa23.42■■□□□ 1.34
CLN3-259ENST00000637551 ISCA1Q9BUE6 129 aa23.42■■□□□ 1.34
CLN3-259ENST00000637551 NLRP10Q86W26 655 aa23.41■■□□□ 1.34
CLN3-259ENST00000637551 LAMB2P55268 1798 aa23.41■■□□□ 1.34
CLN3-259ENST00000637551 A0A0G2JLW4 131 aa23.4■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 232.9 ms