RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 MRC1P22897 1456 aa20■□□□□ 0.79
CLN3-249ENST00000636685 AKAP4Q5JQC9 854 aa20■□□□□ 0.79
CLN3-249ENST00000636685 CASP8AP2Q9UKL3 1982 aa20■□□□□ 0.79
CLN3-249ENST00000636685 RNF123Q5XPI4 1314 aa20■□□□□ 0.79
CLN3-249ENST00000636685 UBR2Q8IWV8 1755 aa19.99■□□□□ 0.79
CLN3-249ENST00000636685 A0A087WZG4 1122 aa19.99■□□□□ 0.79
CLN3-249ENST00000636685 SRGNP10124 158 aa19.99■□□□□ 0.79
CLN3-249ENST00000636685 GRM1Q13255 1194 aa19.99■□□□□ 0.79
CLN3-249ENST00000636685 PAXIP1Q6ZW49 1069 aaPredicted RBP19.99■□□□□ 0.79
CLN3-249ENST00000636685 CAPNS2Q96L46 248 aa19.99■□□□□ 0.79
CLN3-249ENST00000636685 BEGAINQ9BUH8 593 aa19.99■□□□□ 0.79
CLN3-249ENST00000636685 RNMTO43148 476 aaKnown RBP19.98■□□□□ 0.79
CLN3-249ENST00000636685 PNMA8AQ86V59 439 aaPredicted RBP19.98■□□□□ 0.79
CLN3-249ENST00000636685 VSIG10Q8N0Z9 540 aa19.98■□□□□ 0.79
CLN3-249ENST00000636685 C7orf43Q8WVR3 580 aa19.98■□□□□ 0.79
CLN3-249ENST00000636685 MASTLQ96GX5 879 aa19.98■□□□□ 0.79
CLN3-249ENST00000636685 ZNF277Q9NRM2 450 aaPredicted RBP19.98■□□□□ 0.79
CLN3-249ENST00000636685 TBC1D2BQ9UPU7 963 aa19.98■□□□□ 0.79
CLN3-249ENST00000636685 FMR1Q06787 632 aaKnown RBP eCLIP19.97■□□□□ 0.79
CLN3-249ENST00000636685 CYP4F22Q6NT55 531 aa19.97■□□□□ 0.79
CLN3-249ENST00000636685 CNBD1Q8NA66 436 aa19.97■□□□□ 0.79
CLN3-249ENST00000636685 MCOLN1Q9GZU1 580 aa19.97■□□□□ 0.79
CLN3-249ENST00000636685 DDX21Q9NR30 783 aaKnown RBP eCLIP19.97■□□□□ 0.79
CLN3-249ENST00000636685 NPHP1O15259 732 aa19.96■□□□□ 0.79
CLN3-249ENST00000636685 CCDC93Q567U6 631 aa19.96■□□□□ 0.79
CLN3-249ENST00000636685 GPR101Q96P66 508 aaPredicted RBP19.96■□□□□ 0.79
CLN3-249ENST00000636685 ZNF330Q9Y3S2 320 aaPredicted RBP19.96■□□□□ 0.79
CLN3-249ENST00000636685 TRPM7Q96QT4 1865 aa19.96■□□□□ 0.79
CLN3-249ENST00000636685 LTBP1Q14766 1721 aa19.96■□□□□ 0.79
CLN3-249ENST00000636685 STARD3NLO95772 234 aa19.95■□□□□ 0.78
CLN3-249ENST00000636685 ST5P78524 1137 aa19.95■□□□□ 0.78
CLN3-249ENST00000636685 FKBP4Q02790 459 aaKnown RBP eCLIP19.95■□□□□ 0.78
CLN3-249ENST00000636685 OLFM4Q6UX06 510 aa19.95■□□□□ 0.78
CLN3-249ENST00000636685 ECE1P42892 770 aa19.94■□□□□ 0.78
CLN3-249ENST00000636685 SETDB2Q96T68 719 aa19.94■□□□□ 0.78
CLN3-249ENST00000636685 POLR3GLQ9BT43 218 aa19.93■□□□□ 0.78
CLN3-249ENST00000636685 AOC2O75106 756 aa19.92■□□□□ 0.78
CLN3-249ENST00000636685 FZD9O00144 591 aa19.91■□□□□ 0.78
CLN3-249ENST00000636685 IL13P35225 146 aa19.91■□□□□ 0.78
CLN3-249ENST00000636685 CAMTA2O94983 1202 aa19.9■□□□□ 0.78
CLN3-249ENST00000636685 GPC2Q8N158 579 aa19.9■□□□□ 0.78
CLN3-249ENST00000636685 BCORQ6W2J9 1755 aa19.9■□□□□ 0.78
CLN3-249ENST00000636685 IARSP41252 1262 aaKnown RBP19.89■□□□□ 0.77
CLN3-249ENST00000636685 CST9Q5W186 159 aa19.89■□□□□ 0.77
CLN3-249ENST00000636685 TRAF5O00463 557 aa19.88■□□□□ 0.77
CLN3-249ENST00000636685 NPR1P16066 1061 aa19.88■□□□□ 0.77
CLN3-249ENST00000636685 IL6STP40189 918 aaPredicted RBP19.88■□□□□ 0.77
CLN3-249ENST00000636685 DGKZQ13574 1117 aa19.88■□□□□ 0.77
CLN3-249ENST00000636685 TTC5Q8N0Z6 440 aa19.88■□□□□ 0.77
CLN3-249ENST00000636685 SYNE4Q8N205 404 aa19.88■□□□□ 0.77
CLN3-249ENST00000636685 TLL2Q9Y6L7 1015 aa19.88■□□□□ 0.77
CLN3-249ENST00000636685 A1BGP04217 495 aa19.87■□□□□ 0.77
CLN3-249ENST00000636685 MAP2K2P36507 400 aa19.87■□□□□ 0.77
CLN3-249ENST00000636685 RTKN2Q8IZC4 609 aa19.87■□□□□ 0.77
CLN3-249ENST00000636685 ZNF496Q96IT1 587 aaPredicted RBP19.87■□□□□ 0.77
CLN3-249ENST00000636685 GJA3Q9Y6H8 435 aa19.87■□□□□ 0.77
CLN3-249ENST00000636685 MTHFSDQ2M296 383 aaKnown RBP19.86■□□□□ 0.77
CLN3-249ENST00000636685 HEG1Q9ULI3 1381 aa19.85■□□□□ 0.77
CLN3-249ENST00000636685 HMOX1P09601 288 aa19.85■□□□□ 0.77
CLN3-249ENST00000636685 EPS15P42566 896 aa19.85■□□□□ 0.77
CLN3-249ENST00000636685 MORC1Q86VD1 984 aa19.85■□□□□ 0.77
CLN3-249ENST00000636685 NBPF5PQ86XG9 351 aaPredicted RBP19.85■□□□□ 0.77
CLN3-249ENST00000636685 COL4A5P29400 1685 aa19.84■□□□□ 0.77
CLN3-249ENST00000636685 LMOD1P29536 600 aaPredicted RBP19.84■□□□□ 0.77
CLN3-249ENST00000636685 KLRG2A4D1S0 409 aaPredicted RBP19.83■□□□□ 0.77
CLN3-249ENST00000636685 CA12O43570 354 aa19.83■□□□□ 0.77
CLN3-249ENST00000636685 NPM2Q86SE8 214 aaKnown RBP19.83■□□□□ 0.77
CLN3-249ENST00000636685 DZIP3Q86Y13 1208 aaKnown RBP19.83■□□□□ 0.77
CLN3-249ENST00000636685 JDP2Q8WYK2 163 aa19.83■□□□□ 0.77
CLN3-249ENST00000636685 TEX13AQ9BXU3 409 aaPredicted RBP19.83■□□□□ 0.77
CLN3-249ENST00000636685 PANK3Q9H999 370 aa19.83■□□□□ 0.77
CLN3-249ENST00000636685 SCNN1DP51172 638 aa19.82■□□□□ 0.76
CLN3-249ENST00000636685 EIF6P56537 245 aaKnown RBP19.82■□□□□ 0.76
CLN3-249ENST00000636685 SIPA1L3O60292 1781 aaPredicted RBP19.81■□□□□ 0.76
CLN3-249ENST00000636685 ZNF790Q6PG37 636 aa19.81■□□□□ 0.76
CLN3-249ENST00000636685 SNED1Q8TER0 1413 aa19.8■□□□□ 0.76
CLN3-249ENST00000636685 PIP4K2AP48426 406 aaPredicted RBP19.8■□□□□ 0.76
CLN3-249ENST00000636685 SOX10P56693 466 aa19.8■□□□□ 0.76
CLN3-249ENST00000636685 USP50Q70EL3 339 aaPredicted RBP19.8■□□□□ 0.76
CLN3-249ENST00000636685 SAPCD2Q86UD0 394 aa19.8■□□□□ 0.76
CLN3-249ENST00000636685 BRPF1P55201 1214 aaPredicted RBP19.79■□□□□ 0.76
CLN3-249ENST00000636685 CIAPIN1Q6FI81 312 aa19.79■□□□□ 0.76
CLN3-249ENST00000636685 PSMD1Q99460 953 aa19.79■□□□□ 0.76
CLN3-249ENST00000636685 FAM177BA6PVY3 158 aa19.78■□□□□ 0.76
CLN3-249ENST00000636685 CELF2O95319 508 aaKnown RBP19.78■□□□□ 0.76
CLN3-249ENST00000636685 ALDH1B1P30837 517 aa19.77■□□□□ 0.76
CLN3-249ENST00000636685 FMNL2Q96PY5 1086 aa19.77■□□□□ 0.76
CLN3-249ENST00000636685 TEFQ10587 303 aa19.76■□□□□ 0.75
CLN3-249ENST00000636685 CLEC4GQ6UXB4 293 aa19.76■□□□□ 0.75
CLN3-249ENST00000636685 TPTE2Q6XPS3 522 aa19.76■□□□□ 0.75
CLN3-249ENST00000636685 IL17REQ8NFR9 667 aa19.76■□□□□ 0.75
CLN3-249ENST00000636685 ZIC5Q96T25 663 aa19.76■□□□□ 0.75
CLN3-249ENST00000636685 KCNQ3O43525 872 aa19.75■□□□□ 0.75
CLN3-249ENST00000636685 PRPF38BQ5VTL8 546 aaKnown RBP19.75■□□□□ 0.75
CLN3-249ENST00000636685 NIP7Q9Y221 180 aaKnown RBP eCLIP19.75■□□□□ 0.75
CLN3-249ENST00000636685 LARGE2Q8N3Y3 721 aa19.74■□□□□ 0.75
CLN3-249ENST00000636685 HHIPL1Q96JK4 782 aa19.74■□□□□ 0.75
CLN3-249ENST00000636685 GLIS2Q9BZE0 524 aaPredicted RBP19.74■□□□□ 0.75
CLN3-249ENST00000636685 ZNF652Q9Y2D9 606 aa19.74■□□□□ 0.75
CLN3-249ENST00000636685 USP16Q9Y5T5 823 aa19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 133.4 ms