RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 NSRP1Q9H0G5 558 aaKnown RBP10.28□□□□□ -0.76
VCL-206ENST00000623461 BMP2KQ9NSY1 1161 aaPredicted RBP10.28□□□□□ -0.76
VCL-206ENST00000623461 TMEM132EQ6IEE7 984 aa10.28□□□□□ -0.76
VCL-206ENST00000623461 POTEDQ86YR6 584 aa10.28□□□□□ -0.76
VCL-206ENST00000623461 CTAGE1Q96RT6 745 aa10.28□□□□□ -0.76
VCL-206ENST00000623461 TFIP11Q9UBB9 837 aaKnown RBP10.28□□□□□ -0.76
VCL-206ENST00000623461 A0A1B0GUA9 196 aa10.27□□□□□ -0.76
VCL-206ENST00000623461 TMX1Q9H3N1 280 aa10.27□□□□□ -0.77
VCL-206ENST00000623461 EVA1CP58658 441 aa10.27□□□□□ -0.77
VCL-206ENST00000623461 CCDC121Q6ZUS5 278 aa10.27□□□□□ -0.77
VCL-206ENST00000623461 RSRC1Q96IZ7 334 aaKnown RBP10.27□□□□□ -0.77
VCL-206ENST00000623461 ZNF692Q9BU19 519 aaPredicted RBP10.27□□□□□ -0.77
VCL-206ENST00000623461 CTAGE9A4FU28 777 aa10.27□□□□□ -0.77
VCL-206ENST00000623461 SSR1P43307 286 aaKnown RBP10.27□□□□□ -0.77
VCL-206ENST00000623461 MSL1Q68DK7 614 aa10.27□□□□□ -0.77
VCL-206ENST00000623461 SULT6B1Q6IMI4 303 aa10.27□□□□□ -0.77
VCL-206ENST00000623461 TAOK3Q9H2K8 898 aa10.27□□□□□ -0.77
VCL-206ENST00000623461 KDM2BQ8NHM5 1336 aa10.27□□□□□ -0.77
VCL-206ENST00000623461 PCF11O94913 1555 aaKnown RBP10.27□□□□□ -0.77
VCL-206ENST00000623461 PLEKHO1Q53GL0 409 aaPredicted RBP10.27□□□□□ -0.77
VCL-206ENST00000623461 B4GALNT4Q76KP1 1039 aa10.27□□□□□ -0.77
VCL-206ENST00000623461 MAATS1Q7Z4T9 603 aa10.27□□□□□ -0.77
VCL-206ENST00000623461 EVI5LQ96CN4 794 aa10.27□□□□□ -0.77
VCL-206ENST00000623461 ZFP91Q96JP5 570 aaPredicted RBP10.27□□□□□ -0.77
VCL-206ENST00000623461 NSD2O96028 1365 aa10.26□□□□□ -0.77
VCL-206ENST00000623461 ARHGAP5Q13017 1502 aa10.26□□□□□ -0.77
VCL-206ENST00000623461 SPECC1Q5M775 1068 aa10.26□□□□□ -0.77
VCL-206ENST00000623461 SYT1P21579 422 aa10.26□□□□□ -0.77
VCL-206ENST00000623461 VPS36Q86VN1 386 aa10.26□□□□□ -0.77
VCL-206ENST00000623461 CCDC113Q9H0I3 377 aa10.26□□□□□ -0.77
VCL-206ENST00000623461 CCDC50Q8IVM0 306 aa10.26□□□□□ -0.77
VCL-206ENST00000623461 CCDC178Q5BJE1 867 aa10.26□□□□□ -0.77
VCL-206ENST00000623461 ANKS4BQ8N8V4 417 aa10.26□□□□□ -0.77
VCL-206ENST00000623461 NESP48681 1621 aa10.25□□□□□ -0.77
VCL-206ENST00000623461 CLGNO14967 610 aa10.25□□□□□ -0.77
VCL-206ENST00000623461 MKRN1Q9UHC7 482 aaKnown RBP10.25□□□□□ -0.77
VCL-206ENST00000623461 ZMYM3Q14202 1370 aa10.25□□□□□ -0.77
VCL-206ENST00000623461 PARD3Q8TEW0 1356 aa10.25□□□□□ -0.77
VCL-206ENST00000623461 RPGRIP1LQ68CZ1 1315 aa10.25□□□□□ -0.77
VCL-206ENST00000623461 RALGAPBQ86X10 1494 aa10.25□□□□□ -0.77
VCL-206ENST00000623461 GOLIM4O00461 696 aa10.25□□□□□ -0.77
VCL-206ENST00000623461 HLTFQ14527 1009 aaKnown RBP eCLIP10.25□□□□□ -0.77
VCL-206ENST00000623461 CCDC102BQ68D86 513 aa10.25□□□□□ -0.77
VCL-206ENST00000623461 CPLX3Q8WVH0 158 aa10.25□□□□□ -0.77
VCL-206ENST00000623461 SIL1Q9H173 461 aa10.25□□□□□ -0.77
VCL-206ENST00000623461 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.25□□□□□ -0.77
VCL-206ENST00000623461 SDSP20132 328 aa10.25□□□□□ -0.77
VCL-206ENST00000623461 CACNA2D4Q7Z3S7 1137 aa10.25□□□□□ -0.77
VCL-206ENST00000623461 CPSF2Q9P2I0 782 aaKnown RBP10.25□□□□□ -0.77
VCL-206ENST00000623461 TROQ12816 1431 aaPredicted RBP10.25□□□□□ -0.77
VCL-206ENST00000623461 KLHL10Q6JEL2 608 aa10.25□□□□□ -0.77
VCL-206ENST00000623461 ZSWIM4Q9H7M6 989 aa10.25□□□□□ -0.77
VCL-206ENST00000623461 DACT1Q9NYF0 836 aa10.25□□□□□ -0.77
VCL-206ENST00000623461 CCDC196A0A1B0GTZ2 297 aa10.25□□□□□ -0.77
VCL-206ENST00000623461 GTF3C6Q969F1 213 aa10.25□□□□□ -0.77
VCL-206ENST00000623461 TSG101Q99816 390 aa10.25□□□□□ -0.77
VCL-206ENST00000623461 DNAJC25Q9H1X3 360 aa10.25□□□□□ -0.77
VCL-206ENST00000623461 BICRAQ9NZM4 1560 aa10.25□□□□□ -0.77
VCL-206ENST00000623461 SYT10Q6XYQ8 523 aa10.25□□□□□ -0.77
VCL-206ENST00000623461 FAM114A1Q8IWE2 563 aa10.25□□□□□ -0.77
VCL-206ENST00000623461 ARFGAP2Q8N6H7 521 aa10.25□□□□□ -0.77
VCL-206ENST00000623461 KCNG4Q8TDN1 519 aa10.25□□□□□ -0.77
VCL-206ENST00000623461 FAM76AQ8TAV0 307 aa10.24□□□□□ -0.77
VCL-206ENST00000623461 RAPGEF4Q8WZA2 1011 aa10.24□□□□□ -0.77
VCL-206ENST00000623461 SPATA24Q86W54 205 aa10.24□□□□□ -0.77
VCL-206ENST00000623461 ESYT1Q9BSJ8 1104 aa10.24□□□□□ -0.77
VCL-206ENST00000623461 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.24□□□□□ -0.778e-7■■■■■ 34.2
VCL-206ENST00000623461 RAD54L2Q9Y4B4 1467 aa10.24□□□□□ -0.77
VCL-206ENST00000623461 JADE2Q9NQC1 790 aa10.24□□□□□ -0.77
VCL-206ENST00000623461 LIG1P18858 919 aa10.24□□□□□ -0.77
VCL-206ENST00000623461 C6orf163Q5TEZ5 329 aa10.24□□□□□ -0.77
VCL-206ENST00000623461 SEC24BO95487 1268 aa10.24□□□□□ -0.77
VCL-206ENST00000623461 CYLC1P35663 651 aaPredicted RBP10.24□□□□□ -0.77
VCL-206ENST00000623461 CETN2P41208 172 aa10.24□□□□□ -0.77
VCL-206ENST00000623461 SARNPP82979 210 aaKnown RBP10.24□□□□□ -0.77
VCL-206ENST00000623461 AOPEPQ8N6M6 819 aa10.24□□□□□ -0.77
VCL-206ENST00000623461 IFT140Q96RY7 1462 aa10.24□□□□□ -0.77
VCL-206ENST00000623461 GOPCQ9HD26 462 aa10.24□□□□□ -0.77
VCL-206ENST00000623461 GRIN2BQ13224 1484 aa10.23□□□□□ -0.77
VCL-206ENST00000623461 BIN1O00499 593 aa10.23□□□□□ -0.77
VCL-206ENST00000623461 IFI16Q16666 785 aaKnown RBP10.23□□□□□ -0.77
VCL-206ENST00000623461 NUP133Q8WUM0 1156 aa10.23□□□□□ -0.77
VCL-206ENST00000623461 BCL2L12Q9HB09 334 aa10.23□□□□□ -0.77
VCL-206ENST00000623461 CEP57Q86XR8 500 aa10.23□□□□□ -0.77
VCL-206ENST00000623461 MRPS27Q92552 414 aaKnown RBP10.23□□□□□ -0.77
VCL-206ENST00000623461 UBAC1Q9BSL1 405 aa10.23□□□□□ -0.77
VCL-206ENST00000623461 INSRP06213 1382 aa10.23□□□□□ -0.77
VCL-206ENST00000623461 MYCBPQ99417 103 aaPredicted RBP10.23□□□□□ -0.77
VCL-206ENST00000623461 RAD21O60216 631 aa10.23□□□□□ -0.77
VCL-206ENST00000623461 SOGA3Q5TF21 947 aa10.23□□□□□ -0.77
VCL-206ENST00000623461 WWC2Q6AWC2 1192 aa10.23□□□□□ -0.77
VCL-206ENST00000623461 AFAP1L1Q8TED9 768 aa10.23□□□□□ -0.77
VCL-206ENST00000623461 NPHP3Q7Z494 1330 aa10.23□□□□□ -0.77
VCL-206ENST00000623461 ADGBQ8N7X0 1667 aa10.23□□□□□ -0.77
VCL-206ENST00000623461 FYB1O15117 783 aa10.23□□□□□ -0.77
VCL-206ENST00000623461 EVCP57679 992 aa10.23□□□□□ -0.77
VCL-206ENST00000623461 DNAJC21Q5F1R6 531 aaKnown RBP10.23□□□□□ -0.77
VCL-206ENST00000623461 ATRIPQ8WXE1 791 aa10.23□□□□□ -0.77
VCL-206ENST00000623461 STMN4Q9H169 189 aaPredicted RBP10.23□□□□□ -0.77
VCL-206ENST00000623461 CCDC114Q96M63 670 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms