RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 TTC6Q86TZ1 520 aa16.8■□□□□ 0.28
LDB3-209ENST00000623056 CNTROBQ8N137 903 aa16.8■□□□□ 0.28
LDB3-209ENST00000623056 ITSN1Q15811 1721 aa16.8■□□□□ 0.28
LDB3-209ENST00000623056 RAB11FIP3O75154 756 aa16.8■□□□□ 0.28
LDB3-209ENST00000623056 UBTFL1P0CB47 393 aaPredicted RBP16.8■□□□□ 0.28
LDB3-209ENST00000623056 LIG1P18858 919 aa16.8■□□□□ 0.28
LDB3-209ENST00000623056 HDGFP51858 240 aaKnown RBP16.8■□□□□ 0.28
LDB3-209ENST00000623056 CAMK4Q16566 473 aa16.8■□□□□ 0.28
LDB3-209ENST00000623056 NECTIN2Q92692 538 aa16.8■□□□□ 0.28
LDB3-209ENST00000623056 PDRG1Q9NUG6 133 aa16.8■□□□□ 0.28
LDB3-209ENST00000623056 NRBP1Q9UHY1 535 aa16.8■□□□□ 0.28
LDB3-209ENST00000623056 CHMP3Q9Y3E7 222 aa16.8■□□□□ 0.28
LDB3-209ENST00000623056 SURF6O75683 361 aaKnown RBP16.79■□□□□ 0.28
LDB3-209ENST00000623056 ST3GAL1Q11201 340 aa16.79■□□□□ 0.28
LDB3-209ENST00000623056 VPS53Q5VIR6 699 aa16.79■□□□□ 0.28
LDB3-209ENST00000623056 CCDC30Q5VVM6 783 aa16.79■□□□□ 0.28
LDB3-209ENST00000623056 RHPN1Q8TCX5 695 aa16.79■□□□□ 0.28
LDB3-209ENST00000623056 CBX8Q9HC52 389 aa16.79■□□□□ 0.28
LDB3-209ENST00000623056 SH2B1Q9NRF2 756 aaPredicted RBP16.79■□□□□ 0.28
LDB3-209ENST00000623056 FAM208AQ9UK61 1670 aaKnown RBP16.79■□□□□ 0.28
LDB3-209ENST00000623056 PEAK1Q9H792 1746 aa16.79■□□□□ 0.28
LDB3-209ENST00000623056 TNNT1P13805 278 aa16.79■□□□□ 0.28
LDB3-209ENST00000623056 ZNF771Q7L3S4 317 aaPredicted RBP16.79■□□□□ 0.28
LDB3-209ENST00000623056 DRC7Q8IY82 874 aa16.79■□□□□ 0.28
LDB3-209ENST00000623056 ZSCAN31Q96LW9 406 aaPredicted RBP16.79■□□□□ 0.28
LDB3-209ENST00000623056 JAKMIP1Q96N16 626 aaKnown RBP16.79■□□□□ 0.28
LDB3-209ENST00000623056 MAP3K19Q56UN5 1328 aa16.79■□□□□ 0.28
LDB3-209ENST00000623056 ZSCAN25Q6NSZ9 544 aa16.78■□□□□ 0.28
LDB3-209ENST00000623056 ZNF75DP51815 510 aa16.78■□□□□ 0.28
LDB3-209ENST00000623056 KRT85P78386 507 aa16.78■□□□□ 0.28
LDB3-209ENST00000623056 NAA30Q147X3 362 aaPredicted RBP16.78■□□□□ 0.28
LDB3-209ENST00000623056 ADCK5Q3MIX3 580 aa16.78■□□□□ 0.28
LDB3-209ENST00000623056 ANO6Q4KMQ2 910 aa16.78■□□□□ 0.28
LDB3-209ENST00000623056 PPP1R42Q7Z4L9 355 aa16.78■□□□□ 0.28
LDB3-209ENST00000623056 PLA2G4DQ86XP0 818 aa16.78■□□□□ 0.28
LDB3-209ENST00000623056 CKAP2LQ8IYA6 745 aa16.78■□□□□ 0.28
LDB3-209ENST00000623056 CGNQ9P2M7 1197 aaKnown RBP16.78■□□□□ 0.28
LDB3-209ENST00000623056 DDX41Q9UJV9 622 aaKnown RBP16.78■□□□□ 0.28
LDB3-209ENST00000623056 RIMS1Q86UR5 1692 aaKnown RBP16.77■□□□□ 0.28
LDB3-209ENST00000623056 ADAMTS13Q76LX8 1427 aa16.77■□□□□ 0.28
LDB3-209ENST00000623056 ELP1O95163 1332 aa16.77■□□□□ 0.28
LDB3-209ENST00000623056 GABPB1Q06547 395 aaPredicted RBP16.77■□□□□ 0.28
LDB3-209ENST00000623056 SLC26A8Q96RN1 970 aa16.77■□□□□ 0.28
LDB3-209ENST00000623056 N4BP2Q86UW6 1770 aaPredicted RBP16.76■□□□□ 0.27
LDB3-209ENST00000623056 POLA2Q14181 598 aa16.76■□□□□ 0.27
LDB3-209ENST00000623056 ME3Q16798 604 aa16.76■□□□□ 0.27
LDB3-209ENST00000623056 CCDC112Q8NEF3 446 aa16.76■□□□□ 0.27
LDB3-209ENST00000623056 TRIM5Q9C035 493 aa16.76■□□□□ 0.27
LDB3-209ENST00000623056 TNMDQ9H2S6 317 aa16.76■□□□□ 0.27
LDB3-209ENST00000623056 ZSWIM6Q9HCJ5 1215 aa16.76■□□□□ 0.27
LDB3-209ENST00000623056 PAXBP1Q9Y5B6 917 aa16.76■□□□□ 0.27
LDB3-209ENST00000623056 TTC21BQ7Z4L5 1316 aa16.76■□□□□ 0.27
LDB3-209ENST00000623056 PRR36Q9H6K5 1346 aa16.76■□□□□ 0.27
LDB3-209ENST00000623056 PTH1RQ03431 593 aa16.76■□□□□ 0.27
LDB3-209ENST00000623056 PRPF40BQ6NWY9 871 aaKnown RBP16.76■□□□□ 0.27
LDB3-209ENST00000623056 FERMT3Q86UX7 667 aa16.76■□□□□ 0.27
LDB3-209ENST00000623056 NECAB1Q8N987 351 aa16.76■□□□□ 0.27
LDB3-209ENST00000623056 KIF1BPQ96EK5 621 aa16.76■□□□□ 0.27
LDB3-209ENST00000623056 CYP46A1Q9Y6A2 500 aa16.76■□□□□ 0.27
LDB3-209ENST00000623056 PXDNLA1KZ92 1463 aa16.76■□□□□ 0.27
LDB3-209ENST00000623056 OVOS2A0A0J9YW53 1432 aa16.76■□□□□ 0.27
LDB3-209ENST00000623056 OVOS2Q6IE36 1432 aa16.76■□□□□ 0.27
LDB3-209ENST00000623056 LARP1BQ659C4 914 aaKnown RBP16.75■□□□□ 0.27
LDB3-209ENST00000623056 FAM173BQ6P4H8 233 aa16.75■□□□□ 0.27
LDB3-209ENST00000623056 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.75■□□□□ 0.27
LDB3-209ENST00000623056 TM6SF1Q9BZW5 370 aa16.75■□□□□ 0.27
LDB3-209ENST00000623056 DACT1Q9NYF0 836 aa16.75■□□□□ 0.27
LDB3-209ENST00000623056 CRYBG1Q9Y4K1 1723 aa16.75■□□□□ 0.27
LDB3-209ENST00000623056 TAF3Q5VWG9 929 aa16.75■□□□□ 0.27
LDB3-209ENST00000623056 CDC37L1Q7L3B6 337 aa16.75■□□□□ 0.27
LDB3-209ENST00000623056 TTC21AQ8NDW8 1320 aa16.74■□□□□ 0.27
LDB3-209ENST00000623056 TPD52L1Q16890 204 aaPredicted RBP16.74■□□□□ 0.27
LDB3-209ENST00000623056 TDRD7Q8NHU6 1098 aaKnown RBP16.74■□□□□ 0.27
LDB3-209ENST00000623056 MORC2Q9Y6X9 1032 aaPredicted RBP16.74■□□□□ 0.27
LDB3-209ENST00000623056 ROBO2Q9HCK4 1378 aa16.74■□□□□ 0.27
LDB3-209ENST00000623056 CCDC171Q6TFL3 1326 aa16.74■□□□□ 0.27
LDB3-209ENST00000623056 DDX54Q8TDD1 881 aaKnown RBP16.74■□□□□ 0.27
LDB3-209ENST00000623056 CACTINQ8WUQ7 758 aaKnown RBP16.74■□□□□ 0.27
LDB3-209ENST00000623056 MAP3K5Q99683 1374 aa16.73■□□□□ 0.27
LDB3-209ENST00000623056 PLEKHG1Q9ULL1 1385 aa16.73■□□□□ 0.27
LDB3-209ENST00000623056 RBM43Q6ZSC3 357 aaKnown RBP16.73■□□□□ 0.27
LDB3-209ENST00000623056 KIF18AQ8NI77 898 aa16.73■□□□□ 0.27
LDB3-209ENST00000623056 KCNB2Q92953 911 aa16.73■□□□□ 0.27
LDB3-209ENST00000623056 TPCN1Q9ULQ1 816 aa16.73■□□□□ 0.27
LDB3-209ENST00000623056 SOX12O15370 315 aa16.73■□□□□ 0.27
LDB3-209ENST00000623056 SRGAP3O43295 1099 aa16.73■□□□□ 0.27
LDB3-209ENST00000623056 SLFN14P0C7P3 912 aa16.73■□□□□ 0.27
LDB3-209ENST00000623056 RUFY2Q8WXA3 655 aa16.73■□□□□ 0.27
LDB3-209ENST00000623056 CLSTN2Q9H4D0 955 aa16.73■□□□□ 0.27
LDB3-209ENST00000623056 CLIP2Q9UDT6 1046 aa16.73■□□□□ 0.27
LDB3-209ENST00000623056 DDX19AQ9NUU7 478 aaKnown RBP16.72■□□□□ 0.27
LDB3-209ENST00000623056 EID1Q9Y6B2 187 aa16.72■□□□□ 0.27
LDB3-209ENST00000623056 CACNA1FO60840 1977 aa16.72■□□□□ 0.27
LDB3-209ENST00000623056 TECPR2O15040 1411 aa16.72■□□□□ 0.27
LDB3-209ENST00000623056 GOLGA6L4A6NEF3 574 aa16.71■□□□□ 0.27
LDB3-209ENST00000623056 CCDC144BQ3MJ40 725 aa16.71■□□□□ 0.27
LDB3-209ENST00000623056 CEP135Q66GS9 1140 aa16.71■□□□□ 0.27
LDB3-209ENST00000623056 CCDC144CPQ8IYA2 1237 aa16.71■□□□□ 0.27
LDB3-209ENST00000623056 USP42Q9H9J4 1324 aaKnown RBP16.71■□□□□ 0.27
LDB3-209ENST00000623056 GLRX3O76003 335 aaKnown RBP16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms