RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 H2AFXP16104 143 aaPredicted RBP9.33□□□□□ -0.92
VPS11-209ENST00000622309 ERCC6LQ2NKX8 1250 aa9.33□□□□□ -0.92
VPS11-209ENST00000622309 INTS3Q68E01 1043 aaKnown RBP9.33□□□□□ -0.92
VPS11-209ENST00000622309 ATF7IPQ6VMQ6 1270 aa9.33□□□□□ -0.92
VPS11-209ENST00000622309 FILIP1Q7Z7B0 1213 aa9.33□□□□□ -0.92
VPS11-209ENST00000622309 GCC1Q96CN9 775 aa9.33□□□□□ -0.92
VPS11-209ENST00000622309 CALR3Q96L12 384 aaKnown RBP9.33□□□□□ -0.92
VPS11-209ENST00000622309 ZBTB40Q9NUA8 1239 aa9.33□□□□□ -0.92
VPS11-209ENST00000622309 RIPOR2Q9Y4F9 1068 aa9.33□□□□□ -0.92
VPS11-209ENST00000622309 CLTCL1P53675 1640 aa9.32□□□□□ -0.92
VPS11-209ENST00000622309 PLEKHG2Q9H7P9 1386 aa9.32□□□□□ -0.92
VPS11-209ENST00000622309 OAS2P29728 719 aaKnown RBP9.32□□□□□ -0.92
VPS11-209ENST00000622309 TMEM57Q8N5G2 664 aa9.32□□□□□ -0.92
VPS11-209ENST00000622309 TMX3Q96JJ7 454 aa9.32□□□□□ -0.92
VPS11-209ENST00000622309 GPBP1L1Q9HC44 474 aaPredicted RBP9.32□□□□□ -0.92
VPS11-209ENST00000622309 RAI14Q9P0K7 980 aa9.32□□□□□ -0.92
VPS11-209ENST00000622309 CLTCQ00610 1675 aaKnown RBP9.32□□□□□ -0.92
VPS11-209ENST00000622309 NEK4P51957 841 aa9.32□□□□□ -0.92
VPS11-209ENST00000622309 ARHGAP29Q52LW3 1261 aa9.32□□□□□ -0.92
VPS11-209ENST00000622309 TCP11L2Q8N4U5 519 aa9.32□□□□□ -0.92
VPS11-209ENST00000622309 RUNDC1Q96C34 613 aa9.32□□□□□ -0.92
VPS11-209ENST00000622309 RBM28Q9NW13 759 aaKnown RBP9.32□□□□□ -0.92
VPS11-209ENST00000622309 WDR33Q9C0J8 1336 aaKnown RBP9.31□□□□□ -0.92
VPS11-209ENST00000622309 KIF2AO00139 706 aaPredicted RBP9.31□□□□□ -0.92
VPS11-209ENST00000622309 GSCP56915 257 aaPredicted RBP9.31□□□□□ -0.92
VPS11-209ENST00000622309 UBE2HP62256 183 aa9.31□□□□□ -0.92
VPS11-209ENST00000622309 SWT1Q5T5J6 900 aaKnown RBP9.31□□□□□ -0.92
VPS11-209ENST00000622309 NRBP1Q9UHY1 535 aa9.31□□□□□ -0.92
VPS11-209ENST00000622309 EXOC6BQ9Y2D4 811 aa9.31□□□□□ -0.92
VPS11-209ENST00000622309 ACTN2P35609 894 aa9.31□□□□□ -0.92
VPS11-209ENST00000622309 MCM2P49736 904 aa9.31□□□□□ -0.92
VPS11-209ENST00000622309 RINLQ6ZS11 566 aa9.31□□□□□ -0.92
VPS11-209ENST00000622309 NOL8Q76FK4 1167 aaKnown RBP9.31□□□□□ -0.92
VPS11-209ENST00000622309 RPAINQ86UA6 219 aa9.31□□□□□ -0.92
VPS11-209ENST00000622309 SUGP1Q8IWZ8 645 aaKnown RBP9.31□□□□□ -0.92
VPS11-209ENST00000622309 ZCCHC17Q9NP64 241 aaKnown RBP9.31□□□□□ -0.92
VPS11-209ENST00000622309 PRDM15P57071 1507 aaPredicted RBP9.3□□□□□ -0.92
VPS11-209ENST00000622309 CCDC196A0A1B0GTZ2 297 aa9.3□□□□□ -0.92
VPS11-209ENST00000622309 IPO8O15397 1037 aaKnown RBP9.3□□□□□ -0.92
VPS11-209ENST00000622309 MMS22LQ6ZRQ5 1243 aa9.3□□□□□ -0.92
VPS11-209ENST00000622309 EIF3CLB5ME19 914 aaKnown RBP9.3□□□□□ -0.92
VPS11-209ENST00000622309 PPP2R5AQ15172 486 aa9.3□□□□□ -0.92
VPS11-209ENST00000622309 ZRSR1Q15695 479 aaKnown RBP9.3□□□□□ -0.92
VPS11-209ENST00000622309 TSGA10IPQ3SY00 556 aa9.3□□□□□ -0.92
VPS11-209ENST00000622309 SPTY2D1Q68D10 685 aaPredicted RBP9.3□□□□□ -0.92
VPS11-209ENST00000622309 FAM200AQ8TCP9 573 aa9.3□□□□□ -0.92
VPS11-209ENST00000622309 EIF3CQ99613 913 aaKnown RBP9.3□□□□□ -0.92
VPS11-209ENST00000622309 NOB1Q9ULX3 412 aaKnown RBP9.3□□□□□ -0.92
VPS11-209ENST00000622309 DNAAF4Q8WXU2 420 aa9.3□□□□□ -0.92
VPS11-209ENST00000622309 UBXN4Q92575 508 aa9.3□□□□□ -0.92
VPS11-209ENST00000622309 EXOC4Q96A65 974 aa9.3□□□□□ -0.92
VPS11-209ENST00000622309 CEP89Q96ST8 783 aa9.3□□□□□ -0.92
VPS11-209ENST00000622309 TRMT1Q9NXH9 659 aaKnown RBP9.3□□□□□ -0.92
VPS11-209ENST00000622309 INO80Q9ULG1 1556 aaPredicted RBP9.3□□□□□ -0.92
VPS11-209ENST00000622309 SPHKAPQ2M3C7 1700 aa9.3□□□□□ -0.92
VPS11-209ENST00000622309 TRPM2O94759 1503 aa9.3□□□□□ -0.92
VPS11-209ENST00000622309 CACTINQ8WUQ7 758 aaKnown RBP9.29□□□□□ -0.92
VPS11-209ENST00000622309 CLIP2Q9UDT6 1046 aa9.29□□□□□ -0.92
VPS11-209ENST00000622309 PPP1R12AO14974 1030 aaPredicted RBP9.29□□□□□ -0.92
VPS11-209ENST00000622309 CASTP20810 708 aaKnown RBP9.29□□□□□ -0.92
VPS11-209ENST00000622309 SMC1AQ14683 1233 aaKnown RBP9.29□□□□□ -0.92
VPS11-209ENST00000622309 APBB1IPQ7Z5R6 666 aaPredicted RBP9.29□□□□□ -0.92
VPS11-209ENST00000622309 CNPY2Q9Y2B0 182 aa9.29□□□□□ -0.92
VPS11-209ENST00000622309 FOXD4Q12950 439 aaPredicted RBP9.29□□□□□ -0.92
VPS11-209ENST00000622309 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.29□□□□□ -0.92
VPS11-209ENST00000622309 FUCA2Q9BTY2 467 aa9.29□□□□□ -0.92
VPS11-209ENST00000622309 NOS1P29475 1434 aa9.29□□□□□ -0.92
VPS11-209ENST00000622309 ASXL1Q8IXJ9 1541 aa9.28□□□□□ -0.92
VPS11-209ENST00000622309 FIBPO43427 364 aa9.28□□□□□ -0.92
VPS11-209ENST00000622309 ATP8B1O43520 1251 aa9.28□□□□□ -0.92
VPS11-209ENST00000622309 NEMFO60524 1076 aa9.28□□□□□ -0.92
VPS11-209ENST00000622309 MNAT1P51948 309 aa9.28□□□□□ -0.92
VPS11-209ENST00000622309 IQUBQ8NA54 791 aa9.28□□□□□ -0.92
VPS11-209ENST00000622309 EIF2AK4Q9P2K8 1649 aaKnown RBP9.28□□□□□ -0.92
VPS11-209ENST00000622309 ZNF75DP51815 510 aa9.28□□□□□ -0.92
VPS11-209ENST00000622309 TTLL5Q6EMB2 1281 aa9.28□□□□□ -0.92
VPS11-209ENST00000622309 LUZP1Q86V48 1076 aa9.28□□□□□ -0.92
VPS11-209ENST00000622309 ANKLE2Q86XL3 938 aa9.28□□□□□ -0.92
VPS11-209ENST00000622309 TMEM87AQ8NBN3 555 aa9.28□□□□□ -0.92
VPS11-209ENST00000622309 SSH1Q8WYL5 1049 aa9.28□□□□□ -0.92
VPS11-209ENST00000622309 PSD3Q9NYI0 1048 aa9.28□□□□□ -0.92
VPS11-209ENST00000622309 SCAF11Q99590 1463 aaKnown RBP9.28□□□□□ -0.92
VPS11-209ENST00000622309 ELP1O95163 1332 aa9.28□□□□□ -0.92
VPS11-209ENST00000622309 USP27XA6NNY8 438 aa9.27□□□□□ -0.92
VPS11-209ENST00000622309 ZRANB2O95218 330 aaKnown RBP eCLIP9.27□□□□□ -0.92
VPS11-209ENST00000622309 SSR1P43307 286 aaKnown RBP9.27□□□□□ -0.92
VPS11-209ENST00000622309 TRDNQ13061 729 aa9.27□□□□□ -0.92
VPS11-209ENST00000622309 MFSD4BQ5TF39 518 aa9.27□□□□□ -0.92
VPS11-209ENST00000622309 TMCO4Q5TGY1 634 aa9.27□□□□□ -0.92
VPS11-209ENST00000622309 NYAP1Q6ZVC0 841 aa9.27□□□□□ -0.92
VPS11-209ENST00000622309 INTS4Q96HW7 963 aaKnown RBP9.27□□□□□ -0.92
VPS11-209ENST00000622309 ADAM21Q9UKJ8 722 aa9.27□□□□□ -0.92
VPS11-209ENST00000622309 TET3O43151 1660 aa9.27□□□□□ -0.93
VPS11-209ENST00000622309 SKILP12757 684 aa9.27□□□□□ -0.93
VPS11-209ENST00000622309 BIRC2Q13490 618 aa9.27□□□□□ -0.93
VPS11-209ENST00000622309 CCDC34Q96HJ3 373 aa9.27□□□□□ -0.93
VPS11-209ENST00000622309 CEP152O94986 1710 aa9.27□□□□□ -0.93
VPS11-209ENST00000622309 CCDC189A1A4V9 331 aa9.27□□□□□ -0.93
VPS11-209ENST00000622309 GSPT1P15170 499 aaKnown RBP9.27□□□□□ -0.93
VPS11-209ENST00000622309 EXOSC9Q06265 439 aaKnown RBP9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms