RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 ZNF330Q9Y3S2 320 aaPredicted RBP25.32■■□□□ 1.64
UPF3A-211ENST00000618700 CACNA1FO60840 1977 aa25.32■■□□□ 1.64
UPF3A-211ENST00000618700 A0A087WZG4 1122 aa25.31■■□□□ 1.64
UPF3A-211ENST00000618700 ALDH1L2Q3SY69 923 aa25.3■■□□□ 1.64
UPF3A-211ENST00000618700 USP42Q9H9J4 1324 aaKnown RBP25.3■■□□□ 1.64
UPF3A-211ENST00000618700 DZIP3Q86Y13 1208 aaKnown RBP25.29■■□□□ 1.64
UPF3A-211ENST00000618700 SSH1Q8WYL5 1049 aa25.29■■□□□ 1.64
UPF3A-211ENST00000618700 PDGFDQ9GZP0 370 aaPredicted RBP25.29■■□□□ 1.64
UPF3A-211ENST00000618700 RARSP54136 660 aaKnown RBP25.28■■□□□ 1.64
UPF3A-211ENST00000618700 XAGE3Q8WTP9 111 aa25.28■■□□□ 1.64
UPF3A-211ENST00000618700 CAMTA2O94983 1202 aa25.27■■□□□ 1.64
UPF3A-211ENST00000618700 RFC4P35249 363 aa25.27■■□□□ 1.64
UPF3A-211ENST00000618700 TTLL7Q6ZT98 887 aa25.27■■□□□ 1.64
UPF3A-211ENST00000618700 COPS6Q7L5N1 327 aa25.27■■□□□ 1.64
UPF3A-211ENST00000618700 NPM2Q86SE8 214 aaKnown RBP25.27■■□□□ 1.64
UPF3A-211ENST00000618700 PHAXQ9H814 394 aaKnown RBP25.27■■□□□ 1.64
UPF3A-211ENST00000618700 SRP68Q9UHB9 627 aaKnown RBP25.27■■□□□ 1.64
UPF3A-211ENST00000618700 NARFQ9UHQ1 456 aa25.27■■□□□ 1.64
UPF3A-211ENST00000618700 MRPL50Q8N5N7 158 aaKnown RBP25.26■■□□□ 1.63
UPF3A-211ENST00000618700 TBC1D2BQ9UPU7 963 aa25.26■■□□□ 1.63
UPF3A-211ENST00000618700 G2E3Q7L622 706 aa25.25■■□□□ 1.63
UPF3A-211ENST00000618700 MAP3K15Q6ZN16 1313 aa25.25■■□□□ 1.63
UPF3A-211ENST00000618700 RGL2O15211 777 aa25.24■■□□□ 1.63
UPF3A-211ENST00000618700 GYS1P13807 737 aa25.24■■□□□ 1.63
UPF3A-211ENST00000618700 BRPF1P55201 1214 aaPredicted RBP25.24■■□□□ 1.63
UPF3A-211ENST00000618700 USPL1Q5W0Q7 1092 aa25.24■■□□□ 1.63
UPF3A-211ENST00000618700 SLC16A10Q8TF71 515 aa25.24■■□□□ 1.63
UPF3A-211ENST00000618700 BCL2L13Q9BXK5 485 aa25.24■■□□□ 1.63
UPF3A-211ENST00000618700 SMC4Q9NTJ3 1288 aa25.24■■□□□ 1.63
UPF3A-211ENST00000618700 ZPR1O75312 459 aa25.23■■□□□ 1.63
UPF3A-211ENST00000618700 AIMP1Q12904 312 aaKnown RBP25.23■■□□□ 1.63
UPF3A-211ENST00000618700 FLIIQ13045 1269 aa25.23■■□□□ 1.63
UPF3A-211ENST00000618700 KIF6Q6ZMV9 814 aa25.23■■□□□ 1.63
UPF3A-211ENST00000618700 BCL2L12Q9HB09 334 aa25.23■■□□□ 1.63
UPF3A-211ENST00000618700 ZBTB12Q9Y330 459 aaPredicted RBP25.23■■□□□ 1.63
UPF3A-211ENST00000618700 COL24A1Q17RW2 1714 aa25.23■■□□□ 1.63
UPF3A-211ENST00000618700 ERVV-1B6SEH8 477 aa25.22■■□□□ 1.63
UPF3A-211ENST00000618700 ARFGEF2Q9Y6D5 1785 aa25.21■■□□□ 1.63
UPF3A-211ENST00000618700 ZBTB3Q9H5J0 574 aa25.21■■□□□ 1.63
UPF3A-211ENST00000618700 PLBD2Q8NHP8 589 aa25.2■■□□□ 1.62
UPF3A-211ENST00000618700 ARXQ96QS3 562 aa25.2■■□□□ 1.62
UPF3A-211ENST00000618700 ADCY9O60503 1353 aa25.19■■□□□ 1.62
UPF3A-211ENST00000618700 CLEC4GQ6UXB4 293 aa25.19■■□□□ 1.62
UPF3A-211ENST00000618700 ANKRD13DQ6ZTN6 518 aa25.19■■□□□ 1.62
UPF3A-211ENST00000618700 ATP10DQ9P241 1426 aa25.19■■□□□ 1.62
UPF3A-211ENST00000618700 NUP98P52948 1817 aa25.19■■□□□ 1.62
UPF3A-211ENST00000618700 BCAR3O75815 825 aa25.18■■□□□ 1.62
UPF3A-211ENST00000618700 FKBP8Q14318 412 aa25.18■■□□□ 1.62
UPF3A-211ENST00000618700 HLFQ16534 295 aa25.18■■□□□ 1.62
UPF3A-211ENST00000618700 GIGYF2Q6Y7W6 1299 aaKnown RBP25.18■■□□□ 1.62
UPF3A-211ENST00000618700 DDX58O95786 925 aaKnown RBP25.17■■□□□ 1.62
UPF3A-211ENST00000618700 MTFR1LQ9H019 292 aa25.17■■□□□ 1.62
UPF3A-211ENST00000618700 RCAN3Q9UKA8 241 aa25.17■■□□□ 1.62
UPF3A-211ENST00000618700 ZNF652Q9Y2D9 606 aa25.17■■□□□ 1.62
UPF3A-211ENST00000618700 PTPRCP08575 1304 aa25.16■■□□□ 1.62
UPF3A-211ENST00000618700 KIF16BQ96L93 1317 aa25.16■■□□□ 1.62
UPF3A-211ENST00000618700 ANKRD36CQ5JPF3 1778 aa25.16■■□□□ 1.62
UPF3A-211ENST00000618700 ZBTB7AO95365 584 aa25.16■■□□□ 1.62
UPF3A-211ENST00000618700 FKBP5Q13451 457 aaPredicted RBP25.16■■□□□ 1.62
UPF3A-211ENST00000618700 MSL1Q68DK7 614 aa25.16■■□□□ 1.62
UPF3A-211ENST00000618700 KSR2Q6VAB6 950 aa25.16■■□□□ 1.62
UPF3A-211ENST00000618700 NLGN1Q8N2Q7 840 aa25.16■■□□□ 1.62
UPF3A-211ENST00000618700 PI4KAP2A4QPH2 592 aa25.15■■□□□ 1.62
UPF3A-211ENST00000618700 PI4KAP1Q8N8J0 262 aa25.15■■□□□ 1.62
UPF3A-211ENST00000618700 TBC1D9BQ66K14 1250 aa25.13■■□□□ 1.61
UPF3A-211ENST00000618700 RIC3Q7Z5B4 369 aa25.13■■□□□ 1.61
UPF3A-211ENST00000618700 NOB1Q9ULX3 412 aaKnown RBP25.13■■□□□ 1.61
UPF3A-211ENST00000618700 MAP3K2Q9Y2U5 619 aa25.13■■□□□ 1.61
UPF3A-211ENST00000618700 TM4SF1P30408 202 aa25.12■■□□□ 1.61
UPF3A-211ENST00000618700 NFIXQ14938 502 aa25.12■■□□□ 1.61
UPF3A-211ENST00000618700 HSP90AB3PQ58FF7 597 aa25.12■■□□□ 1.61
UPF3A-211ENST00000618700 SPON1Q9HCB6 807 aa25.12■■□□□ 1.61
UPF3A-211ENST00000618700 ZNF34Q8IZ26 560 aa25.11■■□□□ 1.61
UPF3A-211ENST00000618700 SGIP1Q9BQI5 828 aa25.11■■□□□ 1.61
UPF3A-211ENST00000618700 METTL22Q9BUU2 404 aaPredicted RBP25.11■■□□□ 1.61
UPF3A-211ENST00000618700 MMP10P09238 476 aa25.1■■□□□ 1.61
UPF3A-211ENST00000618700 DDR1Q08345 913 aa25.1■■□□□ 1.61
UPF3A-211ENST00000618700 TCIRG1Q13488 830 aa25.1■■□□□ 1.61
UPF3A-211ENST00000618700 DNAAF4Q8WXU2 420 aa25.1■■□□□ 1.61
UPF3A-211ENST00000618700 ARHGAP45Q92619 1136 aa25.1■■□□□ 1.61
UPF3A-211ENST00000618700 UBN2Q6ZU65 1347 aa25.1■■□□□ 1.61
UPF3A-211ENST00000618700 PXDNLA1KZ92 1463 aa25.09■■□□□ 1.61
UPF3A-211ENST00000618700 CARMIL3Q8ND23 1372 aa25.09■■□□□ 1.61
UPF3A-211ENST00000618700 F6X3S4 739 aa25.09■■□□□ 1.61
UPF3A-211ENST00000618700 ISCA1Q9BUE6 129 aa25.09■■□□□ 1.61
UPF3A-211ENST00000618700 POLRMTO00411 1230 aaKnown RBP25.08■■□□□ 1.61
UPF3A-211ENST00000618700 PTGER2P43116 358 aa25.08■■□□□ 1.61
UPF3A-211ENST00000618700 BICDL1Q6ZP65 573 aa25.08■■□□□ 1.61
UPF3A-211ENST00000618700 NIP7Q9Y221 180 aaKnown RBP eCLIP25.08■■□□□ 1.61
UPF3A-211ENST00000618700 NRXN2Q9P2S2 1712 aa25.08■■□□□ 1.61
UPF3A-211ENST00000618700 MYD88Q99836 296 aa25.07■■□□□ 1.6
UPF3A-211ENST00000618700 API5Q9BZZ5 524 aaKnown RBP25.07■■□□□ 1.6
UPF3A-211ENST00000618700 N4BP2Q86UW6 1770 aaPredicted RBP25.07■■□□□ 1.6
UPF3A-211ENST00000618700 IBTKQ9P2D0 1353 aaPredicted RBP25.06■■□□□ 1.6
UPF3A-211ENST00000618700 IPO8O15397 1037 aaKnown RBP25.06■■□□□ 1.6
UPF3A-211ENST00000618700 IGKV5-2P06315 115 aa25.06■■□□□ 1.6
UPF3A-211ENST00000618700 GPTP24298 496 aa25.06■■□□□ 1.6
UPF3A-211ENST00000618700 TRIM28Q13263 835 aaKnown RBP25.06■■□□□ 1.6
UPF3A-211ENST00000618700 FRAT1Q92837 279 aaPredicted RBP25.06■■□□□ 1.6
UPF3A-211ENST00000618700 SETDB2Q96T68 719 aa25.06■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms