RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 PLBD2Q8NHP8 589 aa17.94■□□□□ 0.46
USP39-220ENST00000613444 METTL22Q9BUU2 404 aaPredicted RBP17.94■□□□□ 0.46
USP39-220ENST00000613444 ZBTB1Q9Y2K1 713 aa17.94■□□□□ 0.46
USP39-220ENST00000613444 GNAI3P08754 354 aa17.93■□□□□ 0.46
USP39-220ENST00000613444 CWF19L2Q2TBE0 894 aaKnown RBP17.93■□□□□ 0.46
USP39-220ENST00000613444 CEP85Q6P2H3 762 aa17.93■□□□□ 0.46
USP39-220ENST00000613444 INTS5Q6P9B9 1019 aaKnown RBP17.93■□□□□ 0.46
USP39-220ENST00000613444 SKAP1Q86WV1 359 aa17.93■□□□□ 0.46
USP39-220ENST00000613444 TAF1LQ8IZX4 1826 aa17.92■□□□□ 0.46
USP39-220ENST00000613444 ANKRD44Q8N8A2 993 aa17.92■□□□□ 0.46
USP39-220ENST00000613444 GNAI2P04899 355 aa17.91■□□□□ 0.46
USP39-220ENST00000613444 NBPF7P0C2Y1 421 aaPredicted RBP17.91■□□□□ 0.46
USP39-220ENST00000613444 SMC5Q8IY18 1101 aa17.91■□□□□ 0.46
USP39-220ENST00000613444 NEURL1BA8MQ27 555 aa17.91■□□□□ 0.46
USP39-220ENST00000613444 FAM196AQ6ZSG2 479 aa17.91■□□□□ 0.46
USP39-220ENST00000613444 RPAP2Q8IXW5 612 aaPredicted RBP17.91■□□□□ 0.46
USP39-220ENST00000613444 MYD88Q99836 296 aa17.91■□□□□ 0.46
USP39-220ENST00000613444 UTYO14607 1347 aa17.9■□□□□ 0.46
USP39-220ENST00000613444 CRKLP46109 303 aaKnown RBP17.9■□□□□ 0.46
USP39-220ENST00000613444 BCL11BQ9C0K0 894 aaPredicted RBP17.9■□□□□ 0.46
USP39-220ENST00000613444 NUP98P52948 1817 aa17.9■□□□□ 0.46
USP39-220ENST00000613444 RXRBP28702 533 aa17.9■□□□□ 0.46
USP39-220ENST00000613444 IL6STP40189 918 aaPredicted RBP17.9■□□□□ 0.46
USP39-220ENST00000613444 UBTFL1P0CB47 393 aaPredicted RBP17.89■□□□□ 0.45
USP39-220ENST00000613444 NEXNQ0ZGT2 675 aa17.89■□□□□ 0.45
USP39-220ENST00000613444 POTEAQ6S8J7 498 aa17.89■□□□□ 0.45
USP39-220ENST00000613444 CCDC87Q9NVE4 849 aa17.89■□□□□ 0.45
USP39-220ENST00000613444 LRRFIP2Q9Y608 721 aaKnown RBP17.89■□□□□ 0.45
USP39-220ENST00000613444 EIF5P55010 431 aaKnown RBP17.89■□□□□ 0.45
USP39-220ENST00000613444 ZBTB3Q9H5J0 574 aa17.89■□□□□ 0.45
USP39-220ENST00000613444 ANKRD36CQ5JPF3 1778 aa17.88■□□□□ 0.45
USP39-220ENST00000613444 GCKRQ14397 625 aa17.88■□□□□ 0.45
USP39-220ENST00000613444 LINC00116Q8NCU8 138 aa17.88■□□□□ 0.45
USP39-220ENST00000613444 GRM8O00222 908 aa17.87■□□□□ 0.45
USP39-220ENST00000613444 KCNQ4P56696 695 aa17.87■□□□□ 0.45
USP39-220ENST00000613444 PELP1Q8IZL8 1130 aaKnown RBP17.87■□□□□ 0.45
USP39-220ENST00000613444 ZNF330Q9Y3S2 320 aaPredicted RBP17.87■□□□□ 0.45
USP39-220ENST00000613444 MAP3K15Q6ZN16 1313 aa17.86■□□□□ 0.45
USP39-220ENST00000613444 PDZRN3Q9UPQ7 1066 aa17.86■□□□□ 0.45
USP39-220ENST00000613444 ATP5J2-PTCD1G3V325 749 aa17.86■□□□□ 0.45
USP39-220ENST00000613444 ATP8B2P98198 1209 aa17.86■□□□□ 0.45
USP39-220ENST00000613444 DCTPP1Q9H773 170 aa17.86■□□□□ 0.45
USP39-220ENST00000613444 C9orf78Q9NZ63 289 aaPredicted RBP17.86■□□□□ 0.45
USP39-220ENST00000613444 KIF6Q6ZMV9 814 aa17.85■□□□□ 0.45
USP39-220ENST00000613444 KAZALD1Q96I82 304 aa17.85■□□□□ 0.45
USP39-220ENST00000613444 CNTNAP4Q9C0A0 1308 aa17.85■□□□□ 0.45
USP39-220ENST00000613444 PNMA6EA0A0J9YXQ4 647 aa17.84■□□□□ 0.45
USP39-220ENST00000613444 GCC1Q96CN9 775 aa17.84■□□□□ 0.45
USP39-220ENST00000613444 ISCA1Q9BUE6 129 aa17.84■□□□□ 0.45
USP39-220ENST00000613444 TCIRG1Q13488 830 aa17.84■□□□□ 0.45
USP39-220ENST00000613444 HLFQ16534 295 aa17.84■□□□□ 0.45
USP39-220ENST00000613444 BCORQ6W2J9 1755 aa17.83■□□□□ 0.45
USP39-220ENST00000613444 TRIM37O94972 964 aa17.83■□□□□ 0.45
USP39-220ENST00000613444 CASP7P55210 303 aa17.83■□□□□ 0.45
USP39-220ENST00000613444 GIGYF2Q6Y7W6 1299 aaKnown RBP17.83■□□□□ 0.45
USP39-220ENST00000613444 CCNL1Q9UK58 526 aaPredicted RBP17.83■□□□□ 0.45
USP39-220ENST00000613444 NUCB1Q02818 461 aa17.83■□□□□ 0.44
USP39-220ENST00000613444 TRIM28Q13263 835 aaKnown RBP17.83■□□□□ 0.44
USP39-220ENST00000613444 DZIP3Q86Y13 1208 aaKnown RBP17.83■□□□□ 0.44
USP39-220ENST00000613444 SUCLG2Q96I99 432 aa17.83■□□□□ 0.44
USP39-220ENST00000613444 C4BP0C0L5 1744 aa17.82■□□□□ 0.44
USP39-220ENST00000613444 ERVV-1B6SEH8 477 aa17.82■□□□□ 0.44
USP39-220ENST00000613444 MTX1Q13505 466 aa17.82■□□□□ 0.44
USP39-220ENST00000613444 RC3H1Q5TC82 1133 aaKnown RBP17.82■□□□□ 0.44
USP39-220ENST00000613444 TBC1D2BQ9UPU7 963 aa17.82■□□□□ 0.44
USP39-220ENST00000613444 COL15A1P39059 1388 aa17.82■□□□□ 0.44
USP39-220ENST00000613444 HMMRO75330 724 aa17.81■□□□□ 0.44
USP39-220ENST00000613444 POLA2Q14181 598 aa17.81■□□□□ 0.44
USP39-220ENST00000613444 CCDC191Q8NCU4 936 aa17.81■□□□□ 0.44
USP39-220ENST00000613444 SSH3Q8TE77 659 aa17.81■□□□□ 0.44
USP39-220ENST00000613444 H7C1W4 665 aa17.81■□□□□ 0.44
USP39-220ENST00000613444 PPP1R42Q7Z4L9 355 aa17.81■□□□□ 0.44
USP39-220ENST00000613444 LRRC4BQ9NT99 713 aa17.81■□□□□ 0.44
USP39-220ENST00000613444 CWC25Q9NXE8 425 aaPredicted RBP17.81■□□□□ 0.44
USP39-220ENST00000613444 A0A087WZG4 1122 aa17.8■□□□□ 0.44
USP39-220ENST00000613444 HDAC5Q9UQL6 1122 aa17.8■□□□□ 0.44
USP39-220ENST00000613444 TNS1Q9HBL0 1735 aaKnown RBP17.79■□□□□ 0.44
USP39-220ENST00000613444 CAMTA2O94983 1202 aa17.79■□□□□ 0.44
USP39-220ENST00000613444 PDE4AP27815 886 aa17.79■□□□□ 0.44
USP39-220ENST00000613444 UBE3BQ7Z3V4 1068 aa17.79■□□□□ 0.44
USP39-220ENST00000613444 JARID2Q92833 1246 aaPredicted RBP17.79■□□□□ 0.44
USP39-220ENST00000613444 ARXQ96QS3 562 aa17.79■□□□□ 0.44
USP39-220ENST00000613444 BICC1Q9H694 974 aaKnown RBP17.79■□□□□ 0.44
USP39-220ENST00000613444 RGS3P49796 1198 aa17.79■□□□□ 0.44
USP39-220ENST00000613444 EPHA10Q5JZY3 1008 aa17.79■□□□□ 0.44
USP39-220ENST00000613444 CHD1LQ86WJ1 897 aa17.79■□□□□ 0.44
USP39-220ENST00000613444 SCN7AQ01118 1682 aa17.78■□□□□ 0.44
USP39-220ENST00000613444 UBR3Q6ZT12 1888 aa17.77■□□□□ 0.44
USP39-220ENST00000613444 SRGAP3O43295 1099 aa17.77■□□□□ 0.44
USP39-220ENST00000613444 RPS6KA4O75676 772 aa17.77■□□□□ 0.44
USP39-220ENST00000613444 HSP90AB3PQ58FF7 597 aa17.77■□□□□ 0.44
USP39-220ENST00000613444 ANKRD45Q5TZF3 282 aa17.77■□□□□ 0.44
USP39-220ENST00000613444 NPM2Q86SE8 214 aaKnown RBP17.77■□□□□ 0.44
USP39-220ENST00000613444 C4AP0C0L4 1744 aa17.77■□□□□ 0.44
USP39-220ENST00000613444 NLRP10Q86W26 655 aa17.77■□□□□ 0.43
USP39-220ENST00000613444 AMIGO3Q86WK7 504 aa17.77■□□□□ 0.43
USP39-220ENST00000613444 ZNF34Q8IZ26 560 aa17.77■□□□□ 0.43
USP39-220ENST00000613444 RABL6Q3YEC7 729 aaPredicted RBP17.76■□□□□ 0.43
USP39-220ENST00000613444 PROM2Q8N271 834 aa17.76■□□□□ 0.43
USP39-220ENST00000613444 LNPKQ9C0E8 428 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms