RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 CCDC57Q2TAC2 916 aa5.7□□□□□ -1.5
VPS13D-213ENST00000613099 ZSCAN31Q96LW9 406 aaPredicted RBP5.7□□□□□ -1.5
VPS13D-213ENST00000613099 DNAJC5BQ9UF47 199 aa5.7□□□□□ -1.5
VPS13D-213ENST00000613099 FEZ2Q9UHY8 353 aaPredicted RBP5.7□□□□□ -1.5
VPS13D-213ENST00000613099 GAPVD1Q14C86 1478 aa5.7□□□□□ -1.5
VPS13D-213ENST00000613099 DESP17661 470 aa5.7□□□□□ -1.5
VPS13D-213ENST00000613099 GNG11P61952 73 aa5.7□□□□□ -1.5
VPS13D-213ENST00000613099 NUCB1Q02818 461 aa5.7□□□□□ -1.5
VPS13D-213ENST00000613099 ARFGAP2Q8N6H7 521 aa5.7□□□□□ -1.5
VPS13D-213ENST00000613099 CTAGE9A4FU28 777 aa5.7□□□□□ -1.5
VPS13D-213ENST00000613099 CEP85LQ5SZL2 805 aa5.7□□□□□ -1.5
VPS13D-213ENST00000613099 PAF1Q8N7H5 531 aa5.7□□□□□ -1.5
VPS13D-213ENST00000613099 PDCD7Q8N8D1 485 aaKnown RBP5.7□□□□□ -1.5
VPS13D-213ENST00000613099 UTP3Q9NQZ2 479 aaKnown RBP eCLIP5.7□□□□□ -1.51e-6■■■■■ 109.1
VPS13D-213ENST00000613099 CKAP4Q07065 602 aaKnown RBP5.7□□□□□ -1.5
VPS13D-213ENST00000613099 TEX14Q8IWB6 1497 aa5.7□□□□□ -1.5
VPS13D-213ENST00000613099 ABCA10Q8WWZ4 1543 aa5.7□□□□□ -1.5
VPS13D-213ENST00000613099 ANKRD1Q15327 319 aa5.7□□□□□ -1.5
VPS13D-213ENST00000613099 SMIM24O75264 130 aa5.7□□□□□ -1.5
VPS13D-213ENST00000613099 PRPHP41219 470 aa5.7□□□□□ -1.5
VPS13D-213ENST00000613099 SEPT7Q16181 437 aaKnown RBP5.7□□□□□ -1.5
VPS13D-213ENST00000613099 RBSNQ9H1K0 784 aa5.7□□□□□ -1.5
VPS13D-213ENST00000613099 HYPKQ9NX55 129 aa5.7□□□□□ -1.5
VPS13D-213ENST00000613099 GPR161Q8N6U8 529 aaKnown RBP5.7□□□□□ -1.5
VPS13D-213ENST00000613099 N4BP2L2Q92802 583 aaPredicted RBP5.7□□□□□ -1.5
VPS13D-213ENST00000613099 POLA1P09884 1462 aaPredicted RBP5.7□□□□□ -1.5
VPS13D-213ENST00000613099 EHBP1L1Q8N3D4 1523 aa5.69□□□□□ -1.5
VPS13D-213ENST00000613099 FAM177BA6PVY3 158 aa5.69□□□□□ -1.5
VPS13D-213ENST00000613099 BRPF1P55201 1214 aaPredicted RBP5.69□□□□□ -1.5
VPS13D-213ENST00000613099 PCMTD1Q96MG8 357 aaPredicted RBP5.69□□□□□ -1.5
VPS13D-213ENST00000613099 MPHOSPH9Q99550 1183 aa5.69□□□□□ -1.5
VPS13D-213ENST00000613099 NSRP1Q9H0G5 558 aaKnown RBP5.69□□□□□ -1.5
VPS13D-213ENST00000613099 U2AF1L5P0DN76 240 aaPredicted RBP5.69□□□□□ -1.5
VPS13D-213ENST00000613099 U2AF1Q01081 240 aaKnown RBP eCLIP5.69□□□□□ -1.54e-7■■■□□ 17.5
VPS13D-213ENST00000613099 LNPKQ9C0E8 428 aa5.69□□□□□ -1.5
VPS13D-213ENST00000613099 CDKL5O76039 1030 aa5.69□□□□□ -1.5
VPS13D-213ENST00000613099 SPATA32Q96LK8 384 aa5.69□□□□□ -1.5
VPS13D-213ENST00000613099 ARAP3Q8WWN8 1544 aa5.69□□□□□ -1.5
VPS13D-213ENST00000613099 SESN3P58005 492 aa5.69□□□□□ -1.5
VPS13D-213ENST00000613099 MAP7D1Q3KQU3 841 aa5.69□□□□□ -1.5
VPS13D-213ENST00000613099 RASEFQ8IZ41 740 aa5.69□□□□□ -1.5
VPS13D-213ENST00000613099 NOL12Q9UGY1 213 aaKnown RBP eCLIP5.69□□□□□ -1.5
VPS13D-213ENST00000613099 DHX29Q7Z478 1369 aaKnown RBP5.69□□□□□ -1.5
VPS13D-213ENST00000613099 RPAP2Q8IXW5 612 aaPredicted RBP5.69□□□□□ -1.5
VPS13D-213ENST00000613099 ATRIPQ8WXE1 791 aa5.69□□□□□ -1.5
VPS13D-213ENST00000613099 RABEP2Q9H5N1 569 aa5.69□□□□□ -1.5
VPS13D-213ENST00000613099 LARSQ9P2J5 1176 aaKnown RBP5.69□□□□□ -1.5
VPS13D-213ENST00000613099 TACC1O75410 805 aa5.69□□□□□ -1.5
VPS13D-213ENST00000613099 CPLX2Q6PUV4 134 aaKnown RBP5.69□□□□□ -1.5
VPS13D-213ENST00000613099 ARMCX6Q7L4S7 300 aa5.69□□□□□ -1.5
VPS13D-213ENST00000613099 MICAL1Q8TDZ2 1067 aa5.69□□□□□ -1.5
VPS13D-213ENST00000613099 NAA15Q9BXJ9 866 aaKnown RBP5.69□□□□□ -1.5
VPS13D-213ENST00000613099 FBXW7Q969H0 707 aa5.69□□□□□ -1.5
VPS13D-213ENST00000613099 CCDC47Q96A33 483 aaKnown RBP5.69□□□□□ -1.5
VPS13D-213ENST00000613099 CAPN7Q9Y6W3 813 aa5.69□□□□□ -1.5
VPS13D-213ENST00000613099 C6orf163Q5TEZ5 329 aa5.69□□□□□ -1.5
VPS13D-213ENST00000613099 PAIP2BQ9ULR5 123 aaKnown RBP5.69□□□□□ -1.5
VPS13D-213ENST00000613099 CHUKO15111 745 aa5.69□□□□□ -1.5
VPS13D-213ENST00000613099 ZNF165P49910 485 aa5.69□□□□□ -1.5
VPS13D-213ENST00000613099 WHAMMQ8TF30 809 aa5.69□□□□□ -1.5
VPS13D-213ENST00000613099 USP6NLQ92738 828 aa5.69□□□□□ -1.5
VPS13D-213ENST00000613099 ANO2Q9NQ90 1003 aa5.69□□□□□ -1.5
VPS13D-213ENST00000613099 SLC52A1Q9NWF4 448 aa5.69□□□□□ -1.5
VPS13D-213ENST00000613099 NDUFAB1O14561 156 aa5.68□□□□□ -1.5
VPS13D-213ENST00000613099 STMN4Q9H169 189 aaPredicted RBP5.68□□□□□ -1.5
VPS13D-213ENST00000613099 LRRD1A4D1F6 860 aa5.68□□□□□ -1.5
VPS13D-213ENST00000613099 TOP1P11387 765 aaKnown RBP5.68□□□□□ -1.5
VPS13D-213ENST00000613099 DDX46Q7L014 1031 aaKnown RBP5.68□□□□□ -1.5
VPS13D-213ENST00000613099 FAM177A1Q8N128 213 aaPredicted RBP5.68□□□□□ -1.5
VPS13D-213ENST00000613099 FKBP5Q13451 457 aaPredicted RBP5.68□□□□□ -1.5
VPS13D-213ENST00000613099 SH2B1Q9NRF2 756 aaPredicted RBP5.68□□□□□ -1.5
VPS13D-213ENST00000613099 OAS2P29728 719 aaKnown RBP5.68□□□□□ -1.5
VPS13D-213ENST00000613099 MPHOSPH6Q99547 160 aaKnown RBP5.68□□□□□ -1.5
VPS13D-213ENST00000613099 GNL3LQ9NVN8 582 aaKnown RBP5.68□□□□□ -1.5
VPS13D-213ENST00000613099 MRFAP1Q9Y605 127 aa5.68□□□□□ -1.5
VPS13D-213ENST00000613099 RAD51AP2Q09MP3 1159 aa5.68□□□□□ -1.5
VPS13D-213ENST00000613099 ELF2Q15723 593 aa5.68□□□□□ -1.5
VPS13D-213ENST00000613099 VCX3BQ9H321 246 aa5.68□□□□□ -1.5
VPS13D-213ENST00000613099 VCX3AQ9NNX9 186 aa5.68□□□□□ -1.5
VPS13D-213ENST00000613099 CROCC2H7BZ55 1655 aa5.68□□□□□ -1.5
VPS13D-213ENST00000613099 PPP2R3AQ06190 1150 aa5.68□□□□□ -1.5
VPS13D-213ENST00000613099 TTC19Q6DKK2 380 aaPredicted RBP5.68□□□□□ -1.5
VPS13D-213ENST00000613099 APLFQ8IW19 511 aaPredicted RBP5.68□□□□□ -1.5
VPS13D-213ENST00000613099 NAP1L3Q99457 506 aaPredicted RBP5.68□□□□□ -1.5
VPS13D-213ENST00000613099 API5Q9BZZ5 524 aaKnown RBP5.68□□□□□ -1.5
VPS13D-213ENST00000613099 CCDC27Q2M243 656 aa5.68□□□□□ -1.5
VPS13D-213ENST00000613099 TBC1D22AQ8WUA7 517 aa5.68□□□□□ -1.5
VPS13D-213ENST00000613099 KIF2CQ99661 725 aa5.68□□□□□ -1.5
VPS13D-213ENST00000613099 PPP1R12BO60237 982 aaPredicted RBP5.68□□□□□ -1.5
VPS13D-213ENST00000613099 CHGAP10645 457 aaKnown RBP5.68□□□□□ -1.5
VPS13D-213ENST00000613099 PSMD2Q13200 908 aa5.68□□□□□ -1.5
VPS13D-213ENST00000613099 CCDC6Q16204 474 aa5.68□□□□□ -1.5
VPS13D-213ENST00000613099 FBXO18Q8NFZ0 1043 aa5.68□□□□□ -1.5
VPS13D-213ENST00000613099 PPFIA1Q13136 1202 aa5.68□□□□□ -1.5
VPS13D-213ENST00000613099 SPTLC3Q9NUV7 552 aa5.68□□□□□ -1.5
VPS13D-213ENST00000613099 STIM2Q9P246 746 aa5.68□□□□□ -1.5
VPS13D-213ENST00000613099 TEX11Q8IYF3 940 aa5.68□□□□□ -1.5
VPS13D-213ENST00000613099 C8orf34Q49A92 452 aa5.68□□□□□ -1.5
VPS13D-213ENST00000613099 FHOD3Q2V2M9 1422 aa5.67□□□□□ -1.5
VPS13D-213ENST00000613099 LARP1BQ659C4 914 aaKnown RBP5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms