RNA–Protein interactions for RNA: ENST00000602574.5

COMMD3-215, Transcript of COMM domain containing 3, humanhuman

TSL 1 (best)

Gene COMMD3, Length 2,290 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-215ENST00000602574 L3MBTL2Q969R5 705 aa10.37□□□□□ -0.75
COMMD3-215ENST00000602574 TSPY26PQ9H489 355 aa10.37□□□□□ -0.75
COMMD3-215ENST00000602574 A0A1B0GUA9 196 aa10.37□□□□□ -0.75
COMMD3-215ENST00000602574 EPB41L2O43491 1005 aaKnown RBP10.37□□□□□ -0.75
COMMD3-215ENST00000602574 NBPF7P0C2Y1 421 aaPredicted RBP10.37□□□□□ -0.75
COMMD3-215ENST00000602574 RAB27AP51159 221 aa10.37□□□□□ -0.75
COMMD3-215ENST00000602574 CCNHP51946 323 aaPredicted RBP10.37□□□□□ -0.75
COMMD3-215ENST00000602574 FOXD4Q12950 439 aaPredicted RBP10.37□□□□□ -0.75
COMMD3-215ENST00000602574 APBB1IPQ7Z5R6 666 aaPredicted RBP10.37□□□□□ -0.75
COMMD3-215ENST00000602574 MICALL1Q8N3F8 863 aa10.37□□□□□ -0.75
COMMD3-215ENST00000602574 TRIM7Q9C029 511 aa10.37□□□□□ -0.75
COMMD3-215ENST00000602574 TRPV5Q9NQA5 729 aa10.37□□□□□ -0.75
COMMD3-215ENST00000602574 MYBBP1AQ9BQG0 1328 aaKnown RBP10.37□□□□□ -0.75
COMMD3-215ENST00000602574 LAMC1P11047 1609 aa10.36□□□□□ -0.75
COMMD3-215ENST00000602574 NESP48681 1621 aa10.36□□□□□ -0.75
COMMD3-215ENST00000602574 EXOC5O00471 708 aa10.36□□□□□ -0.75
COMMD3-215ENST00000602574 GPTP24298 496 aa10.36□□□□□ -0.75
COMMD3-215ENST00000602574 PREPLQ4J6C6 727 aaPredicted RBP10.36□□□□□ -0.75
COMMD3-215ENST00000602574 ACBD5Q5T8D3 534 aaPredicted RBP10.36□□□□□ -0.75
COMMD3-215ENST00000602574 DDX11Q96FC9 970 aa10.36□□□□□ -0.75
COMMD3-215ENST00000602574 BLMP54132 1417 aaPredicted RBP10.36□□□□□ -0.75
COMMD3-215ENST00000602574 RPGRIP1LQ68CZ1 1315 aa10.36□□□□□ -0.75
COMMD3-215ENST00000602574 NF2P35240 595 aa10.36□□□□□ -0.75
COMMD3-215ENST00000602574 TRPC1P48995 793 aa10.36□□□□□ -0.75
COMMD3-215ENST00000602574 CCDC15Q0P6D6 951 aa10.36□□□□□ -0.75
COMMD3-215ENST00000602574 SPRYD3Q8NCJ5 442 aa10.36□□□□□ -0.75
COMMD3-215ENST00000602574 CTCFLQ8NI51 663 aaPredicted RBP10.36□□□□□ -0.75
COMMD3-215ENST00000602574 TEKT1Q969V4 418 aa10.36□□□□□ -0.75
COMMD3-215ENST00000602574 CFAP53Q96M91 514 aa10.36□□□□□ -0.75
COMMD3-215ENST00000602574 LMCD1Q9NZU5 365 aa10.36□□□□□ -0.75
COMMD3-215ENST00000602574 ELP1O95163 1332 aa10.35□□□□□ -0.75
COMMD3-215ENST00000602574 DEUP1Q05D60 604 aa10.35□□□□□ -0.75
COMMD3-215ENST00000602574 REXO1L1PQ8IX06 675 aa10.35□□□□□ -0.75
COMMD3-215ENST00000602574 CCDC34Q96HJ3 373 aa10.35□□□□□ -0.75
COMMD3-215ENST00000602574 FMNL2Q96PY5 1086 aa10.35□□□□□ -0.75
COMMD3-215ENST00000602574 TTC12Q9H892 705 aaPredicted RBP10.35□□□□□ -0.75
COMMD3-215ENST00000602574 KDM6BO15054 1643 aa10.35□□□□□ -0.75
COMMD3-215ENST00000602574 VDRP11473 427 aa10.35□□□□□ -0.75
COMMD3-215ENST00000602574 RLBP1P12271 317 aa10.35□□□□□ -0.75
COMMD3-215ENST00000602574 HNRNPH1P31943 449 aaKnown RBP10.35□□□□□ -0.75
COMMD3-215ENST00000602574 ANKRD45Q5TZF3 282 aa10.35□□□□□ -0.75
COMMD3-215ENST00000602574 WDR78Q5VTH9 848 aa10.35□□□□□ -0.75
COMMD3-215ENST00000602574 LRRC31Q6UY01 552 aa10.35□□□□□ -0.75
COMMD3-215ENST00000602574 NOL8Q76FK4 1167 aaKnown RBP10.35□□□□□ -0.75
COMMD3-215ENST00000602574 KIAA1328Q86T90 577 aa10.35□□□□□ -0.75
COMMD3-215ENST00000602574 PABPN1Q86U42 306 aaKnown RBP eCLIP10.35□□□□□ -0.75
COMMD3-215ENST00000602574 TRIM42Q8IWZ5 723 aa10.35□□□□□ -0.75
COMMD3-215ENST00000602574 IQCF2Q8IXL9 164 aa10.35□□□□□ -0.75
COMMD3-215ENST00000602574 IRX2Q9BZI1 471 aaPredicted RBP10.35□□□□□ -0.75
COMMD3-215ENST00000602574 ITSN2Q9NZM3 1697 aa10.34□□□□□ -0.75
COMMD3-215ENST00000602574 AP1G2O75843 785 aa10.34□□□□□ -0.75
COMMD3-215ENST00000602574 NBPF8Q3BBV2 869 aa10.34□□□□□ -0.75
COMMD3-215ENST00000602574 KCNV1Q6PIU1 500 aa10.34□□□□□ -0.75
COMMD3-215ENST00000602574 SPATA21Q7Z572 469 aa10.34□□□□□ -0.75
COMMD3-215ENST00000602574 TAX1BP1Q86VP1 789 aa10.34□□□□□ -0.75
COMMD3-215ENST00000602574 HDAC7Q8WUI4 952 aa10.34□□□□□ -0.75
COMMD3-215ENST00000602574 SRRTQ9BXP5 876 aaKnown RBP10.34□□□□□ -0.75
COMMD3-215ENST00000602574 ARGLU1Q9NWB6 273 aaPredicted RBP10.34□□□□□ -0.75
COMMD3-215ENST00000602574 PDLIM1O00151 329 aa10.33□□□□□ -0.76
COMMD3-215ENST00000602574 FMNL1O95466 1100 aaPredicted RBP10.33□□□□□ -0.76
COMMD3-215ENST00000602574 CYP2E1P05181 493 aaPredicted RBP10.33□□□□□ -0.76
COMMD3-215ENST00000602574 ST5P78524 1137 aa10.33□□□□□ -0.76
COMMD3-215ENST00000602574 SF3B2Q13435 895 aaKnown RBP10.33□□□□□ -0.76
COMMD3-215ENST00000602574 GJC2Q5T442 439 aaPredicted RBP10.33□□□□□ -0.76
COMMD3-215ENST00000602574 WLSQ5T9L3 541 aa10.33□□□□□ -0.76
COMMD3-215ENST00000602574 RCSD1Q6JBY9 416 aa10.33□□□□□ -0.76
COMMD3-215ENST00000602574 N4BP2L2Q92802 583 aaPredicted RBP10.33□□□□□ -0.76
COMMD3-215ENST00000602574 BICD1Q96G01 975 aa10.33□□□□□ -0.76
COMMD3-215ENST00000602574 CLASP1Q7Z460 1538 aa10.33□□□□□ -0.76
COMMD3-215ENST00000602574 PLIN1O60240 522 aa10.33□□□□□ -0.76
COMMD3-215ENST00000602574 RTN3O95197 1032 aaPredicted RBP10.33□□□□□ -0.76
COMMD3-215ENST00000602574 SLC8A3P57103 927 aa10.33□□□□□ -0.76
COMMD3-215ENST00000602574 IQCB1Q15051 598 aa10.33□□□□□ -0.76
COMMD3-215ENST00000602574 WDR63Q8IWG1 891 aa10.33□□□□□ -0.76
COMMD3-215ENST00000602574 GTF3C6Q969F1 213 aa10.33□□□□□ -0.76
COMMD3-215ENST00000602574 FAM163AQ96GL9 167 aaPredicted RBP10.33□□□□□ -0.76
COMMD3-215ENST00000602574 RWDD1Q9H446 243 aaPredicted RBP10.33□□□□□ -0.76
COMMD3-215ENST00000602574 ADGRL2O95490 1459 aa10.33□□□□□ -0.76
COMMD3-215ENST00000602574 USP47Q96K76 1375 aa10.33□□□□□ -0.76
COMMD3-215ENST00000602574 CROCC2H7BZ55 1655 aa10.32□□□□□ -0.76
COMMD3-215ENST00000602574 KIF5CO60282 957 aa10.32□□□□□ -0.76
COMMD3-215ENST00000602574 VCAM1P19320 739 aa10.32□□□□□ -0.76
COMMD3-215ENST00000602574 CDCA2Q69YH5 1023 aaPredicted RBP10.32□□□□□ -0.76
COMMD3-215ENST00000602574 TMOD4Q9NZQ9 345 aa10.32□□□□□ -0.76
COMMD3-215ENST00000602574 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.32□□□□□ -0.76
COMMD3-215ENST00000602574 ERBB3P21860 1342 aa10.32□□□□□ -0.76
COMMD3-215ENST00000602574 DAPK1P53355 1430 aa10.32□□□□□ -0.76
COMMD3-215ENST00000602574 FLT3P36888 993 aa10.32□□□□□ -0.76
COMMD3-215ENST00000602574 C17orf53Q8N3J3 647 aaPredicted RBP10.32□□□□□ -0.76
COMMD3-215ENST00000602574 MIPOL1Q8TD10 442 aa10.32□□□□□ -0.76
COMMD3-215ENST00000602574 BICD2Q8TD16 824 aa10.32□□□□□ -0.76
COMMD3-215ENST00000602574 THRAP3Q9Y2W1 955 aaKnown RBP10.32□□□□□ -0.76
COMMD3-215ENST00000602574 KDM5DQ9BY66 1539 aa10.31□□□□□ -0.76
COMMD3-215ENST00000602574 CHUKO15111 745 aa10.31□□□□□ -0.76
COMMD3-215ENST00000602574 ERLIN2O94905 339 aa10.31□□□□□ -0.76
COMMD3-215ENST00000602574 TPP2P29144 1249 aaPredicted RBP10.31□□□□□ -0.76
COMMD3-215ENST00000602574 SCRN1Q12765 414 aa10.31□□□□□ -0.76
COMMD3-215ENST00000602574 CPLX2Q6PUV4 134 aaKnown RBP10.31□□□□□ -0.76
COMMD3-215ENST00000602574 TBC1D5Q92609 795 aa10.31□□□□□ -0.76
COMMD3-215ENST00000602574 PYCARDQ9ULZ3 195 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms