RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 ARHGEF25Q86VW2 580 aa24.41■■□□□ 1.5
SHKBP1-225ENST00000600733 DIAPH3Q9NSV4 1193 aa24.41■■□□□ 1.5
SHKBP1-225ENST00000600733 KSR2Q6VAB6 950 aa24.4■■□□□ 1.5
SHKBP1-225ENST00000600733 RNF214Q8ND24 703 aa24.4■■□□□ 1.5
SHKBP1-225ENST00000600733 USP48Q86UV5 1035 aa24.4■■□□□ 1.5
SHKBP1-225ENST00000600733 MSNP26038 577 aaKnown RBP24.39■■□□□ 1.5
SHKBP1-225ENST00000600733 ANKRD24Q8TF21 1146 aa24.39■■□□□ 1.5
SHKBP1-225ENST00000600733 ALDH1L1O75891 902 aa24.38■■□□□ 1.49
SHKBP1-225ENST00000600733 PTH1RQ03431 593 aa24.38■■□□□ 1.49
SHKBP1-225ENST00000600733 ECHDC1Q9NTX5 307 aa24.38■■□□□ 1.49
SHKBP1-225ENST00000600733 NCAPD2Q15021 1401 aa24.38■■□□□ 1.49
SHKBP1-225ENST00000600733 CASTP20810 708 aaKnown RBP24.38■■□□□ 1.49
SHKBP1-225ENST00000600733 LIMCH1Q9UPQ0 1083 aa24.37■■□□□ 1.49
SHKBP1-225ENST00000600733 HEG1Q9ULI3 1381 aa24.37■■□□□ 1.49
SHKBP1-225ENST00000600733 IFIT2P09913 472 aaKnown RBP24.37■■□□□ 1.49
SHKBP1-225ENST00000600733 AXIN2Q9Y2T1 843 aa24.37■■□□□ 1.49
SHKBP1-225ENST00000600733 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP24.37■■□□□ 1.49
SHKBP1-225ENST00000600733 DTNBO60941 627 aa24.36■■□□□ 1.49
SHKBP1-225ENST00000600733 LARGE1O95461 756 aa24.36■■□□□ 1.49
SHKBP1-225ENST00000600733 HS1BP3Q53T59 392 aa24.36■■□□□ 1.49
SHKBP1-225ENST00000600733 AACSQ86V21 672 aa24.36■■□□□ 1.49
SHKBP1-225ENST00000600733 AIMP1Q12904 312 aaKnown RBP24.35■■□□□ 1.49
SHKBP1-225ENST00000600733 ADCK5Q3MIX3 580 aa24.35■■□□□ 1.49
SHKBP1-225ENST00000600733 PRPF40BQ6NWY9 871 aaKnown RBP24.35■■□□□ 1.49
SHKBP1-225ENST00000600733 RUFY2Q8WXA3 655 aa24.35■■□□□ 1.49
SHKBP1-225ENST00000600733 KAZALD1Q96I82 304 aa24.35■■□□□ 1.49
SHKBP1-225ENST00000600733 SUCLG2Q96I99 432 aa24.35■■□□□ 1.49
SHKBP1-225ENST00000600733 SYAP1Q96A49 352 aaPredicted RBP24.34■■□□□ 1.49
SHKBP1-225ENST00000600733 CNPY2Q9Y2B0 182 aa24.34■■□□□ 1.49
SHKBP1-225ENST00000600733 OVOS2A0A0G2JMS6 1433 aa24.34■■□□□ 1.49
SHKBP1-225ENST00000600733 GRM8O00222 908 aa24.33■■□□□ 1.49
SHKBP1-225ENST00000600733 ZSCAN22P10073 491 aaPredicted RBP24.33■■□□□ 1.49
SHKBP1-225ENST00000600733 SYT1P21579 422 aa24.33■■□□□ 1.49
SHKBP1-225ENST00000600733 ERC1Q8IUD2 1116 aa24.33■■□□□ 1.49
SHKBP1-225ENST00000600733 GPATCH3Q96I76 525 aa24.33■■□□□ 1.49
SHKBP1-225ENST00000600733 TSPY26PQ9H489 355 aa24.33■■□□□ 1.49
SHKBP1-225ENST00000600733 HYPKQ9NX55 129 aa24.33■■□□□ 1.49
SHKBP1-225ENST00000600733 EIF2AK3Q9NZJ5 1116 aaKnown RBP24.33■■□□□ 1.49
SHKBP1-225ENST00000600733 NOL7Q9UMY1 257 aaKnown RBP24.33■■□□□ 1.49
SHKBP1-225ENST00000600733 TPRNQ4KMQ1 711 aa24.33■■□□□ 1.49
SHKBP1-225ENST00000600733 JAKMIP1Q96N16 626 aaKnown RBP24.33■■□□□ 1.49
SHKBP1-225ENST00000600733 BICC1Q9H694 974 aaKnown RBP24.33■■□□□ 1.49
SHKBP1-225ENST00000600733 SLIT3O75094 1523 aa24.32■■□□□ 1.48
SHKBP1-225ENST00000600733 STX6O43752 255 aa24.32■■□□□ 1.48
SHKBP1-225ENST00000600733 LINS1Q8NG48 757 aa24.32■■□□□ 1.48
SHKBP1-225ENST00000600733 ZSCAN21Q9Y5A6 473 aaPredicted RBP24.32■■□□□ 1.48
SHKBP1-225ENST00000600733 SASH1O94885 1247 aa24.32■■□□□ 1.48
SHKBP1-225ENST00000600733 DDX54Q8TDD1 881 aaKnown RBP24.32■■□□□ 1.48
SHKBP1-225ENST00000600733 SMC3Q9UQE7 1217 aa24.32■■□□□ 1.48
SHKBP1-225ENST00000600733 EVI5LQ96CN4 794 aa24.31■■□□□ 1.48
SHKBP1-225ENST00000600733 SIPA1L3O60292 1781 aaPredicted RBP24.31■■□□□ 1.48
SHKBP1-225ENST00000600733 EAF2Q96CJ1 260 aaPredicted RBP24.31■■□□□ 1.48
SHKBP1-225ENST00000600733 CCDC83Q8IWF9 413 aa24.3■■□□□ 1.48
SHKBP1-225ENST00000600733 TMEM87AQ8NBN3 555 aa24.3■■□□□ 1.48
SHKBP1-225ENST00000600733 CCDC8Q9H0W5 538 aaPredicted RBP24.3■■□□□ 1.48
SHKBP1-225ENST00000600733 PDRG1Q9NUG6 133 aa24.3■■□□□ 1.48
SHKBP1-225ENST00000600733 PDIA6Q15084 440 aa24.3■■□□□ 1.48
SHKBP1-225ENST00000600733 FAM227BQ96M60 508 aa24.3■■□□□ 1.48
SHKBP1-225ENST00000600733 DDX21Q9NR30 783 aaKnown RBP eCLIP24.3■■□□□ 1.48
SHKBP1-225ENST00000600733 HDAC5Q9UQL6 1122 aa24.3■■□□□ 1.48
SHKBP1-225ENST00000600733 SLC39A6Q13433 755 aa24.29■■□□□ 1.48
SHKBP1-225ENST00000600733 SIL1Q9H173 461 aa24.29■■□□□ 1.48
SHKBP1-225ENST00000600733 TLR7Q9NYK1 1049 aaKnown RBP24.29■■□□□ 1.48
SHKBP1-225ENST00000600733 CCDC171Q6TFL3 1326 aa24.28■■□□□ 1.48
SHKBP1-225ENST00000600733 OFD1O75665 1012 aa24.28■■□□□ 1.48
SHKBP1-225ENST00000600733 VPS53Q5VIR6 699 aa24.28■■□□□ 1.48
SHKBP1-225ENST00000600733 RGPD5Q99666 1765 aa24.28■■□□□ 1.48
SHKBP1-225ENST00000600733 UTYO14607 1347 aa24.28■■□□□ 1.48
SHKBP1-225ENST00000600733 PHF14O94880 888 aa24.28■■□□□ 1.48
SHKBP1-225ENST00000600733 DDX58O95786 925 aaKnown RBP24.28■■□□□ 1.48
SHKBP1-225ENST00000600733 F13A1P00488 732 aa24.28■■□□□ 1.48
SHKBP1-225ENST00000600733 G3BP1Q13283 466 aaKnown RBP eCLIP24.28■■□□□ 1.48
SHKBP1-225ENST00000600733 NECTIN1Q15223 517 aa24.28■■□□□ 1.48
SHKBP1-225ENST00000600733 ZSWIM6Q9HCJ5 1215 aa24.28■■□□□ 1.48
SHKBP1-225ENST00000600733 IGKV5-2P06315 115 aa24.27■■□□□ 1.48
SHKBP1-225ENST00000600733 KLHDC4Q8TBB5 520 aa24.27■■□□□ 1.48
SHKBP1-225ENST00000600733 CYP46A1Q9Y6A2 500 aa24.27■■□□□ 1.48
SHKBP1-225ENST00000600733 CAMTA1Q9Y6Y1 1673 aa24.27■■□□□ 1.48
SHKBP1-225ENST00000600733 GJB2P29033 226 aa24.27■■□□□ 1.48
SHKBP1-225ENST00000600733 RBM8AQ9Y5S9 174 aaKnown RBP24.27■■□□□ 1.48
SHKBP1-225ENST00000600733 NMIQ13287 307 aaPredicted RBP24.26■■□□□ 1.47
SHKBP1-225ENST00000600733 KCNB2Q92953 911 aa24.26■■□□□ 1.47
SHKBP1-225ENST00000600733 ZKSCAN5Q9Y2L8 839 aa24.26■■□□□ 1.47
SHKBP1-225ENST00000600733 FIBPO43427 364 aa24.26■■□□□ 1.47
SHKBP1-225ENST00000600733 MYL6BP14649 208 aa24.26■■□□□ 1.47
SHKBP1-225ENST00000600733 COL9A3Q14050 684 aaPredicted RBP24.26■■□□□ 1.47
SHKBP1-225ENST00000600733 RIC3Q7Z5B4 369 aa24.26■■□□□ 1.47
SHKBP1-225ENST00000600733 ZNF142P52746 1687 aaPredicted RBP24.25■■□□□ 1.47
SHKBP1-225ENST00000600733 ST3GAL1Q11201 340 aa24.25■■□□□ 1.47
SHKBP1-225ENST00000600733 TM6SF1Q9BZW5 370 aa24.25■■□□□ 1.47
SHKBP1-225ENST00000600733 ZNF500O60304 480 aaPredicted RBP24.24■■□□□ 1.47
SHKBP1-225ENST00000600733 KCNJ4P48050 445 aa24.24■■□□□ 1.47
SHKBP1-225ENST00000600733 ZC3H6P61129 1189 aaKnown RBP24.24■■□□□ 1.47
SHKBP1-225ENST00000600733 CREB3L3Q68CJ9 461 aa24.24■■□□□ 1.47
SHKBP1-225ENST00000600733 ZNF790Q6PG37 636 aa24.24■■□□□ 1.47
SHKBP1-225ENST00000600733 KRT28Q7Z3Y7 464 aa24.24■■□□□ 1.47
SHKBP1-225ENST00000600733 BOLA2Q9H3K6 86 aa24.24■■□□□ 1.47
SHKBP1-225ENST00000600733 ERBB3P21860 1342 aa24.24■■□□□ 1.47
SHKBP1-225ENST00000600733 ZKSCAN1P17029 563 aaPredicted RBP24.24■■□□□ 1.47
SHKBP1-225ENST00000600733 ME3Q16798 604 aa24.24■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms