RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 FMNL2Q96PY5 1086 aa8.26□□□□□ -1.09
VRK3-220ENST00000600259 PASKQ96RG2 1323 aa8.26□□□□□ -1.09
VRK3-220ENST00000600259 ANKRD31Q8N7Z5 1873 aa8.26□□□□□ -1.09
VRK3-220ENST00000600259 NBPF26B4DH59 902 aa8.25□□□□□ -1.09
VRK3-220ENST00000600259 CAPN15O75808 1086 aa8.25□□□□□ -1.09
VRK3-220ENST00000600259 ITGBL1O95965 494 aaPredicted RBP8.25□□□□□ -1.09
VRK3-220ENST00000600259 PIP4K2AP48426 406 aaPredicted RBP8.25□□□□□ -1.09
VRK3-220ENST00000600259 NBPF10Q6P3W6 841 aaKnown RBP8.25□□□□□ -1.09
VRK3-220ENST00000600259 CLEC4GQ6UXB4 293 aa8.25□□□□□ -1.09
VRK3-220ENST00000600259 DZIP3Q86Y13 1208 aaKnown RBP8.25□□□□□ -1.09
VRK3-220ENST00000600259 NBPF15Q8N660 670 aa8.25□□□□□ -1.09
VRK3-220ENST00000600259 MASTLQ96GX5 879 aa8.25□□□□□ -1.09
VRK3-220ENST00000600259 L3MBTL3Q96JM7 780 aaPredicted RBP8.25□□□□□ -1.09
VRK3-220ENST00000600259 RSPH6AQ9H0K4 717 aa8.25□□□□□ -1.09
VRK3-220ENST00000600259 TAOK3Q9H2K8 898 aa8.25□□□□□ -1.09
VRK3-220ENST00000600259 CREBZFQ9NS37 354 aa8.25□□□□□ -1.09
VRK3-220ENST00000600259 BTBD11A6QL63 1104 aa8.24□□□□□ -1.09
VRK3-220ENST00000600259 U2SURPO15042 1029 aaKnown RBP8.24□□□□□ -1.09
VRK3-220ENST00000600259 POTEDQ86YR6 584 aa8.24□□□□□ -1.09
VRK3-220ENST00000600259 CNBD1Q8NA66 436 aa8.24□□□□□ -1.09
VRK3-220ENST00000600259 TAF1DQ9H5J8 278 aaPredicted RBP8.24□□□□□ -1.09
VRK3-220ENST00000600259 MKRN1Q9UHC7 482 aaKnown RBP8.24□□□□□ -1.09
VRK3-220ENST00000600259 SLX4Q8IY92 1834 aa8.24□□□□□ -1.09
VRK3-220ENST00000600259 FER1L6Q2WGJ9 1857 aa8.23□□□□□ -1.09
VRK3-220ENST00000600259 RGL2O15211 777 aa8.23□□□□□ -1.09
VRK3-220ENST00000600259 NPR1P16066 1061 aa8.23□□□□□ -1.09
VRK3-220ENST00000600259 PRKAR2BP31323 418 aa8.23□□□□□ -1.09
VRK3-220ENST00000600259 SOGA3Q5TF21 947 aa8.23□□□□□ -1.09
VRK3-220ENST00000600259 OLFM4Q6UX06 510 aa8.23□□□□□ -1.09
VRK3-220ENST00000600259 ZNF330Q9Y3S2 320 aaPredicted RBP8.23□□□□□ -1.09
VRK3-220ENST00000600259 CCDC88AQ3V6T2 1871 aa8.23□□□□□ -1.09
VRK3-220ENST00000600259 COL11A2P13942 1736 aaPredicted RBP8.23□□□□□ -1.09
VRK3-220ENST00000600259 CNTNAP1P78357 1384 aa8.22□□□□□ -1.09
VRK3-220ENST00000600259 FZD9O00144 591 aa8.22□□□□□ -1.09
VRK3-220ENST00000600259 FOXN1O15353 648 aa8.22□□□□□ -1.09
VRK3-220ENST00000600259 SNRPA1P09661 255 aaKnown RBP8.22□□□□□ -1.09
VRK3-220ENST00000600259 VEGFBP49765 207 aa8.22□□□□□ -1.09
VRK3-220ENST00000600259 ST5P78524 1137 aa8.22□□□□□ -1.09
VRK3-220ENST00000600259 FKBP4Q02790 459 aaKnown RBP eCLIP8.22□□□□□ -1.09
VRK3-220ENST00000600259 HLFQ16534 295 aa8.22□□□□□ -1.09
VRK3-220ENST00000600259 LDHDQ86WU2 507 aa8.22□□□□□ -1.09
VRK3-220ENST00000600259 NBPF5PQ86XG9 351 aaPredicted RBP8.22□□□□□ -1.09
VRK3-220ENST00000600259 CCER1Q8TC90 406 aaPredicted RBP8.22□□□□□ -1.09
VRK3-220ENST00000600259 SIPA1L3O60292 1781 aaPredicted RBP8.22□□□□□ -1.09
VRK3-220ENST00000600259 SNED1Q8TER0 1413 aa8.21□□□□□ -1.09
VRK3-220ENST00000600259 SCN7AQ01118 1682 aa8.21□□□□□ -1.09
VRK3-220ENST00000600259 DICER1Q9UPY3 1922 aaKnown RBP8.21□□□□□ -1.09
VRK3-220ENST00000600259 TIAM2Q8IVF5 1701 aa8.21□□□□□ -1.09
VRK3-220ENST00000600259 IQCA1LA6NCM1 817 aa8.21□□□□□ -1.1
VRK3-220ENST00000600259 DCTN1Q14203 1278 aa8.21□□□□□ -1.1
VRK3-220ENST00000600259 CCDC93Q567U6 631 aa8.21□□□□□ -1.1
VRK3-220ENST00000600259 TPTE2Q6XPS3 522 aa8.21□□□□□ -1.1
VRK3-220ENST00000600259 MCM10Q7L590 875 aa8.21□□□□□ -1.1
VRK3-220ENST00000600259 PRDM10Q9NQV6 1147 aa8.21□□□□□ -1.1
VRK3-220ENST00000600259 ZNF277Q9NRM2 450 aaPredicted RBP8.21□□□□□ -1.1
VRK3-220ENST00000600259 WBP1LQ9NX94 342 aa8.21□□□□□ -1.1
VRK3-220ENST00000600259 VIRMAQ69YN4 1812 aaKnown RBP8.21□□□□□ -1.1
VRK3-220ENST00000600259 ZNF541Q9H0D2 1346 aa8.21□□□□□ -1.1
VRK3-220ENST00000600259 TMEM88BA6NKF7 163 aa8.2□□□□□ -1.1
VRK3-220ENST00000600259 HTATSF1O43719 755 aaKnown RBP8.2□□□□□ -1.1
VRK3-220ENST00000600259 CRY2Q49AN0 593 aa8.2□□□□□ -1.1
VRK3-220ENST00000600259 RTKN2Q8IZC4 609 aa8.2□□□□□ -1.1
VRK3-220ENST00000600259 SYNE4Q8N205 404 aa8.2□□□□□ -1.1
VRK3-220ENST00000600259 NIP7Q9Y221 180 aaKnown RBP eCLIP8.2□□□□□ -1.1
VRK3-220ENST00000600259 RASSF10A6NK89 507 aa8.19□□□□□ -1.1
VRK3-220ENST00000600259 PPP2R1AP30153 589 aa8.19□□□□□ -1.1
VRK3-220ENST00000600259 EPHX2P34913 555 aa8.19□□□□□ -1.1
VRK3-220ENST00000600259 IARSP41252 1262 aaKnown RBP8.19□□□□□ -1.1
VRK3-220ENST00000600259 CNGB1Q14028 1251 aaPredicted RBP8.19□□□□□ -1.1
VRK3-220ENST00000600259 TAF7Q15545 349 aaPredicted RBP8.19□□□□□ -1.1
VRK3-220ENST00000600259 NPM2Q86SE8 214 aaKnown RBP8.19□□□□□ -1.1
VRK3-220ENST00000600259 SLC51AQ86UW1 340 aa8.19□□□□□ -1.1
VRK3-220ENST00000600259 CNTROBQ8N137 903 aa8.19□□□□□ -1.1
VRK3-220ENST00000600259 MIS18AQ9NYP9 233 aa8.19□□□□□ -1.1
VRK3-220ENST00000600259 HACL1Q9UJ83 578 aa8.19□□□□□ -1.1
VRK3-220ENST00000600259 ZNF652Q9Y2D9 606 aa8.19□□□□□ -1.1
VRK3-220ENST00000600259 FAM177BA6PVY3 158 aa8.18□□□□□ -1.1
VRK3-220ENST00000600259 ERVV-1B6SEH8 477 aa8.18□□□□□ -1.1
VRK3-220ENST00000600259 NPHP1O15259 732 aa8.18□□□□□ -1.1
VRK3-220ENST00000600259 ALDH1B1P30837 517 aa8.18□□□□□ -1.1
VRK3-220ENST00000600259 HOXA10P31260 410 aaPredicted RBP8.18□□□□□ -1.1
VRK3-220ENST00000600259 MAP1SQ66K74 1059 aaPredicted RBP8.18□□□□□ -1.1
VRK3-220ENST00000600259 PSMD1Q99460 953 aa8.18□□□□□ -1.1
VRK3-220ENST00000600259 ADAMTSL1Q8N6G6 1762 aa8.17□□□□□ -1.1
VRK3-220ENST00000600259 U2AF1L5P0DN76 240 aaPredicted RBP8.17□□□□□ -1.1
VRK3-220ENST00000600259 CTCFP49711 727 aaPredicted RBP8.17□□□□□ -1.1
VRK3-220ENST00000600259 LBX1P52954 281 aa8.17□□□□□ -1.1
VRK3-220ENST00000600259 EIF4A1P60842 406 aaKnown RBP8.17□□□□□ -1.1
VRK3-220ENST00000600259 U2AF1Q01081 240 aaKnown RBP eCLIP8.17□□□□□ -1.1
VRK3-220ENST00000600259 FMR1Q06787 632 aaKnown RBP eCLIP8.17□□□□□ -1.1
VRK3-220ENST00000600259 DEFB115Q30KQ5 88 aa8.17□□□□□ -1.1
VRK3-220ENST00000600259 EAPPQ56P03 285 aaPredicted RBP8.17□□□□□ -1.1
VRK3-220ENST00000600259 TTLL7Q6ZT98 887 aa8.17□□□□□ -1.1
VRK3-220ENST00000600259 PNMA8AQ86V59 439 aaPredicted RBP8.17□□□□□ -1.1
VRK3-220ENST00000600259 NUTM1Q86Y26 1132 aa8.17□□□□□ -1.1
VRK3-220ENST00000600259 GPC2Q8N158 579 aa8.17□□□□□ -1.1
VRK3-220ENST00000600259 RTF1Q92541 710 aaKnown RBP8.17□□□□□ -1.1
VRK3-220ENST00000600259 CFAP53Q96M91 514 aa8.17□□□□□ -1.1
VRK3-220ENST00000600259 NUDCQ9Y266 331 aa8.17□□□□□ -1.1
VRK3-220ENST00000600259 RNF123Q5XPI4 1314 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms