RNA–Protein interactions for RNA: ENST00000596624.1

PNKP-208, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 4

Gene PNKP, Length 548 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-208ENST00000596624 NBPF15Q8N660 670 aa14.16□□□□□ -0.14
PNKP-208ENST00000596624 CNKSR1Q969H4 720 aa14.16□□□□□ -0.14
PNKP-208ENST00000596624 PRAMEF22A3QJZ6 481 aa14.15□□□□□ -0.14
PNKP-208ENST00000596624 U2AF1L5P0DN76 240 aaPredicted RBP14.15□□□□□ -0.14
PNKP-208ENST00000596624 U2AF1Q01081 240 aaKnown RBP eCLIP14.15□□□□□ -0.14
PNKP-208ENST00000596624 CNBD1Q8NA66 436 aa14.15□□□□□ -0.14
PNKP-208ENST00000596624 C21orf2O43822 256 aa14.14□□□□□ -0.15
PNKP-208ENST00000596624 TAF7Q15545 349 aaPredicted RBP14.14□□□□□ -0.15
PNKP-208ENST00000596624 MCM10Q7L590 875 aa14.14□□□□□ -0.15
PNKP-208ENST00000596624 RTF1Q92541 710 aaKnown RBP14.14□□□□□ -0.15
PNKP-208ENST00000596624 ZNF622Q969S3 477 aaKnown RBP eCLIP14.14□□□□□ -0.15
PNKP-208ENST00000596624 MASTLQ96GX5 879 aa14.14□□□□□ -0.15
PNKP-208ENST00000596624 PCNTO95613 3336 aa14.13□□□□□ -0.15
PNKP-208ENST00000596624 ST5P78524 1137 aa14.13□□□□□ -0.15
PNKP-208ENST00000596624 SOGA3Q5TF21 947 aa14.13□□□□□ -0.15
PNKP-208ENST00000596624 DPY19L2Q6NUT2 758 aa14.13□□□□□ -0.15
PNKP-208ENST00000596624 PLEKHF1Q96S99 279 aa14.13□□□□□ -0.15
PNKP-208ENST00000596624 DCTN1Q14203 1278 aa14.12□□□□□ -0.15
PNKP-208ENST00000596624 PRPF40BQ6NWY9 871 aaKnown RBP14.12□□□□□ -0.15
PNKP-208ENST00000596624 NPM2Q86SE8 214 aaKnown RBP14.12□□□□□ -0.15
PNKP-208ENST00000596624 CCDC24Q8N4L8 307 aa14.12□□□□□ -0.15
PNKP-208ENST00000596624 TAOK3Q9H2K8 898 aa14.12□□□□□ -0.15
PNKP-208ENST00000596624 ZNF652Q9Y2D9 606 aa14.12□□□□□ -0.15
PNKP-208ENST00000596624 ZNF330Q9Y3S2 320 aaPredicted RBP14.12□□□□□ -0.15
PNKP-208ENST00000596624 DLG5Q8TDM6 1919 aa14.11□□□□□ -0.15
PNKP-208ENST00000596624 PIP4K2AP48426 406 aaPredicted RBP14.11□□□□□ -0.15
PNKP-208ENST00000596624 HTRA3P83110 453 aa14.11□□□□□ -0.15
PNKP-208ENST00000596624 CNGB1Q14028 1251 aaPredicted RBP14.11□□□□□ -0.15
PNKP-208ENST00000596624 ERFEQ4G0M1 354 aa14.11□□□□□ -0.15
PNKP-208ENST00000596624 LAMB4A4D0S4 1761 aa14.11□□□□□ -0.15
PNKP-208ENST00000596624 KDM3BQ7LBC6 1761 aa14.11□□□□□ -0.15
PNKP-208ENST00000596624 SNED1Q8TER0 1413 aa14.1□□□□□ -0.15
PNKP-208ENST00000596624 NPR1P16066 1061 aa14.1□□□□□ -0.15
PNKP-208ENST00000596624 TPTE2Q6XPS3 522 aa14.1□□□□□ -0.15
PNKP-208ENST00000596624 NBPF5PQ86XG9 351 aaPredicted RBP14.1□□□□□ -0.15
PNKP-208ENST00000596624 PNISRQ8TF01 805 aaKnown RBP14.1□□□□□ -0.15
PNKP-208ENST00000596624 ERVV-1B6SEH8 477 aa14.09□□□□□ -0.15
PNKP-208ENST00000596624 CRY2Q49AN0 593 aa14.09□□□□□ -0.15
PNKP-208ENST00000596624 L3MBTL3Q96JM7 780 aaPredicted RBP14.09□□□□□ -0.15
PNKP-208ENST00000596624 RIC1Q4ADV7 1423 aa14.08□□□□□ -0.15
PNKP-208ENST00000596624 EIF4A1P60842 406 aaKnown RBP14.08□□□□□ -0.16
PNKP-208ENST00000596624 HLFQ16534 295 aa14.08□□□□□ -0.16
PNKP-208ENST00000596624 NIP7Q9Y221 180 aaKnown RBP eCLIP14.08□□□□□ -0.16
PNKP-208ENST00000596624 CACNA1SQ13698 1873 aa14.08□□□□□ -0.16
PNKP-208ENST00000596624 IBTKQ9P2D0 1353 aaPredicted RBP14.08□□□□□ -0.16
PNKP-208ENST00000596624 SCN4AP35499 1836 aa14.07□□□□□ -0.16
PNKP-208ENST00000596624 CCDC93Q567U6 631 aa14.07□□□□□ -0.16
PNKP-208ENST00000596624 NUP98P52948 1817 aa14.06□□□□□ -0.16
PNKP-208ENST00000596624 DDNO94850 711 aaPredicted RBP14.06□□□□□ -0.16
PNKP-208ENST00000596624 FKBP4Q02790 459 aaKnown RBP eCLIP14.06□□□□□ -0.16
PNKP-208ENST00000596624 NFE2L2Q16236 605 aa14.06□□□□□ -0.16
PNKP-208ENST00000596624 MIS18AQ9NYP9 233 aa14.06□□□□□ -0.16
PNKP-208ENST00000596624 ALDH1B1P30837 517 aa14.05□□□□□ -0.16
PNKP-208ENST00000596624 HOXA10P31260 410 aaPredicted RBP14.05□□□□□ -0.16
PNKP-208ENST00000596624 LRP10Q7Z4F1 713 aa14.05□□□□□ -0.16
PNKP-208ENST00000596624 RTKN2Q8IZC4 609 aa14.05□□□□□ -0.16
PNKP-208ENST00000596624 ZNF219Q9P2Y4 722 aaPredicted RBP14.05□□□□□ -0.16
PNKP-208ENST00000596624 ERBB4Q15303 1308 aa14.05□□□□□ -0.16
PNKP-208ENST00000596624 MAP3K15Q6ZN16 1313 aa14.05□□□□□ -0.16
PNKP-208ENST00000596624 FZD9O00144 591 aa14.04□□□□□ -0.16
PNKP-208ENST00000596624 NPHP1O15259 732 aa14.04□□□□□ -0.16
PNKP-208ENST00000596624 CHADLQ6NUI6 762 aa14.04□□□□□ -0.16
PNKP-208ENST00000596624 PSMD1Q99460 953 aa14.04□□□□□ -0.16
PNKP-208ENST00000596624 NYXQ9GZU5 481 aa14.04□□□□□ -0.16
PNKP-208ENST00000596624 CREBZFQ9NS37 354 aa14.04□□□□□ -0.16
PNKP-208ENST00000596624 BABAM1Q9NWV8 329 aa14.04□□□□□ -0.16
PNKP-208ENST00000596624 PASKQ96RG2 1323 aa14.04□□□□□ -0.16
PNKP-208ENST00000596624 ADAMTSL1Q8N6G6 1762 aa14.04□□□□□ -0.16
PNKP-208ENST00000596624 IQCA1LA6NCM1 817 aa14.03□□□□□ -0.16
PNKP-208ENST00000596624 CC2D2BQ6DHV5 1058 aa14.03□□□□□ -0.16
PNKP-208ENST00000596624 ZNF34Q8IZ26 560 aa14.03□□□□□ -0.16
PNKP-208ENST00000596624 PNNQ9H307 717 aaKnown RBP14.03□□□□□ -0.16
PNKP-208ENST00000596624 TAF1DQ9H5J8 278 aaPredicted RBP14.03□□□□□ -0.16
PNKP-208ENST00000596624 ABCC12Q96J65 1359 aa14.03□□□□□ -0.16
PNKP-208ENST00000596624 NEFMP07197 916 aa14.02□□□□□ -0.17
PNKP-208ENST00000596624 POTEIP0CG38 1075 aa14.02□□□□□ -0.17
PNKP-208ENST00000596624 POTEJP0CG39 1038 aa14.02□□□□□ -0.17
PNKP-208ENST00000596624 PDIA6Q15084 440 aa14.02□□□□□ -0.17
PNKP-208ENST00000596624 GRIPAP1Q4V328 841 aa14.02□□□□□ -0.17
PNKP-208ENST00000596624 COL13A1Q5TAT6 717 aaPredicted RBP14.02□□□□□ -0.17
PNKP-208ENST00000596624 TTLL7Q6ZT98 887 aa14.02□□□□□ -0.17
PNKP-208ENST00000596624 LDHDQ86WU2 507 aa14.02□□□□□ -0.17
PNKP-208ENST00000596624 UBN2Q6ZU65 1347 aa14.01□□□□□ -0.17
PNKP-208ENST00000596624 ITGBL1O95965 494 aaPredicted RBP14.01□□□□□ -0.17
PNKP-208ENST00000596624 GIGYF2Q6Y7W6 1299 aaKnown RBP14.01□□□□□ -0.17
PNKP-208ENST00000596624 ZNF541Q9H0D2 1346 aa14□□□□□ -0.17
PNKP-208ENST00000596624 IARSP41252 1262 aaKnown RBP14□□□□□ -0.17
PNKP-208ENST00000596624 SLC10A5Q5PT55 438 aa14□□□□□ -0.17
PNKP-208ENST00000596624 OLFM4Q6UX06 510 aa14□□□□□ -0.17
PNKP-208ENST00000596624 SYNE4Q8N205 404 aa14□□□□□ -0.17
PNKP-208ENST00000596624 CRAMP1Q96RY5 1269 aa14□□□□□ -0.17
PNKP-208ENST00000596624 THUMPD2Q9BTF0 503 aaKnown RBP14□□□□□ -0.17
PNKP-208ENST00000596624 ZNF277Q9NRM2 450 aaPredicted RBP14□□□□□ -0.17
PNKP-208ENST00000596624 NTSR2O95665 410 aa13.99□□□□□ -0.17
PNKP-208ENST00000596624 SUSD4Q5VX71 490 aa13.99□□□□□ -0.17
PNKP-208ENST00000596624 HSPA1AP0DMV8 641 aaKnown RBP13.98□□□□□ -0.17
PNKP-208ENST00000596624 HSPA1BP0DMV9 641 aaKnown RBP13.98□□□□□ -0.17
PNKP-208ENST00000596624 RALBP1Q15311 655 aa13.98□□□□□ -0.17
PNKP-208ENST00000596624 PARP10Q53GL7 1025 aa13.98□□□□□ -0.17
PNKP-208ENST00000596624 KIF6Q6ZMV9 814 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms