RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 SRCAPQ6ZRS2 3230 aa13.62□□□□□ -0.23
LIG1-210ENST00000596332 ERVV-1B6SEH8 477 aa13.62□□□□□ -0.23
LIG1-210ENST00000596332 RGL2O15211 777 aa13.62□□□□□ -0.23
LIG1-210ENST00000596332 BRPF1P55201 1214 aaPredicted RBP13.62□□□□□ -0.23
LIG1-210ENST00000596332 DDR1Q08345 913 aa13.62□□□□□ -0.23
LIG1-210ENST00000596332 TBC1D9BQ66K14 1250 aa13.62□□□□□ -0.23
LIG1-210ENST00000596332 ADCY9O60503 1353 aa13.61□□□□□ -0.23
LIG1-210ENST00000596332 CT47B1P0C2W7 299 aaPredicted RBP13.61□□□□□ -0.23
LIG1-210ENST00000596332 AIMP1Q12904 312 aaKnown RBP13.61□□□□□ -0.23
LIG1-210ENST00000596332 NFIXQ14938 502 aa13.61□□□□□ -0.23
LIG1-210ENST00000596332 ZNF34Q8IZ26 560 aa13.61□□□□□ -0.23
LIG1-210ENST00000596332 ZNF330Q9Y3S2 320 aaPredicted RBP13.61□□□□□ -0.23
LIG1-210ENST00000596332 BCORQ6W2J9 1755 aa13.6□□□□□ -0.23
LIG1-210ENST00000596332 SCN7AQ01118 1682 aa13.6□□□□□ -0.23
LIG1-210ENST00000596332 MSH5O43196 834 aa13.6□□□□□ -0.23
LIG1-210ENST00000596332 ALDH1L2Q3SY69 923 aa13.6□□□□□ -0.23
LIG1-210ENST00000596332 CLEC4GQ6UXB4 293 aa13.6□□□□□ -0.23
LIG1-210ENST00000596332 GIGYF2Q6Y7W6 1299 aaKnown RBP13.6□□□□□ -0.23
LIG1-210ENST00000596332 ANKRD13DQ6ZTN6 518 aa13.6□□□□□ -0.23
LIG1-210ENST00000596332 NLGN1Q8N2Q7 840 aa13.6□□□□□ -0.23
LIG1-210ENST00000596332 ZNF428Q96B54 188 aa13.6□□□□□ -0.23
LIG1-210ENST00000596332 ZBTB3Q9H5J0 574 aa13.6□□□□□ -0.23
LIG1-210ENST00000596332 POLRMTO00411 1230 aaKnown RBP13.59□□□□□ -0.23
LIG1-210ENST00000596332 ZPR1O75312 459 aa13.59□□□□□ -0.23
LIG1-210ENST00000596332 BCAR3O75815 825 aa13.59□□□□□ -0.23
LIG1-210ENST00000596332 FLIIQ13045 1269 aa13.59□□□□□ -0.23
LIG1-210ENST00000596332 PLBD2Q8NHP8 589 aa13.59□□□□□ -0.23
LIG1-210ENST00000596332 BCL2L13Q9BXK5 485 aa13.59□□□□□ -0.23
LIG1-210ENST00000596332 UBN2Q6ZU65 1347 aa13.59□□□□□ -0.23
LIG1-210ENST00000596332 MMP10P09238 476 aa13.58□□□□□ -0.24
LIG1-210ENST00000596332 ISCA1Q9BUE6 129 aa13.58□□□□□ -0.24
LIG1-210ENST00000596332 ATP10DQ9P241 1426 aa13.57□□□□□ -0.24
LIG1-210ENST00000596332 PI4KAP2A4QPH2 592 aa13.57□□□□□ -0.24
LIG1-210ENST00000596332 IGKV5-2P06315 115 aa13.57□□□□□ -0.24
LIG1-210ENST00000596332 TCIRG1Q13488 830 aa13.57□□□□□ -0.24
LIG1-210ENST00000596332 KSR2Q6VAB6 950 aa13.57□□□□□ -0.24
LIG1-210ENST00000596332 PI4KAP1Q8N8J0 262 aa13.57□□□□□ -0.24
LIG1-210ENST00000596332 CHMP4AQ9BY43 222 aa13.57□□□□□ -0.24
LIG1-210ENST00000596332 SPON1Q9HCB6 807 aa13.57□□□□□ -0.24
LIG1-210ENST00000596332 NUP98P52948 1817 aa13.56□□□□□ -0.24
LIG1-210ENST00000596332 F6X3S4 739 aa13.56□□□□□ -0.24
LIG1-210ENST00000596332 TRIM28Q13263 835 aaKnown RBP13.56□□□□□ -0.24
LIG1-210ENST00000596332 ARXQ96QS3 562 aa13.56□□□□□ -0.24
LIG1-210ENST00000596332 STK31Q9BXU1 1019 aa13.56□□□□□ -0.24
LIG1-210ENST00000596332 TNNQ9UQP3 1299 aa13.56□□□□□ -0.24
LIG1-210ENST00000596332 NRXN2Q9P2S2 1712 aa13.56□□□□□ -0.24
LIG1-210ENST00000596332 SUSD4Q5VX71 490 aa13.55□□□□□ -0.24
LIG1-210ENST00000596332 KIF6Q6ZMV9 814 aa13.55□□□□□ -0.24
LIG1-210ENST00000596332 BICDL1Q6ZP65 573 aa13.55□□□□□ -0.24
LIG1-210ENST00000596332 METTL22Q9BUU2 404 aaPredicted RBP13.55□□□□□ -0.24
LIG1-210ENST00000596332 MAP3K2Q9Y2U5 619 aa13.55□□□□□ -0.24
LIG1-210ENST00000596332 SERPINB2P05120 415 aa13.54□□□□□ -0.24
LIG1-210ENST00000596332 NLRP10Q86W26 655 aa13.54□□□□□ -0.24
LIG1-210ENST00000596332 SYNE4Q8N205 404 aa13.54□□□□□ -0.24
LIG1-210ENST00000596332 NOB1Q9ULX3 412 aaKnown RBP13.54□□□□□ -0.24
LIG1-210ENST00000596332 LRP5O75197 1615 aa13.53□□□□□ -0.24
LIG1-210ENST00000596332 ARFGEF2Q9Y6D5 1785 aa13.53□□□□□ -0.24
LIG1-210ENST00000596332 ATP5J2-PTCD1G3V325 749 aa13.53□□□□□ -0.24
LIG1-210ENST00000596332 NTSR2O95665 410 aa13.53□□□□□ -0.24
LIG1-210ENST00000596332 GPTP24298 496 aa13.53□□□□□ -0.24
LIG1-210ENST00000596332 BEND3Q5T5X7 828 aa13.53□□□□□ -0.24
LIG1-210ENST00000596332 PRR5LQ6MZQ0 368 aa13.53□□□□□ -0.24
LIG1-210ENST00000596332 SMC4Q9NTJ3 1288 aa13.53□□□□□ -0.24
LIG1-210ENST00000596332 NIP7Q9Y221 180 aaKnown RBP eCLIP13.53□□□□□ -0.24
LIG1-210ENST00000596332 CARMIL3Q8ND23 1372 aa13.53□□□□□ -0.24
LIG1-210ENST00000596332 CACNA1FO60840 1977 aa13.52□□□□□ -0.24
LIG1-210ENST00000596332 FKBP5Q13451 457 aaPredicted RBP13.52□□□□□ -0.25
LIG1-210ENST00000596332 RIC3Q7Z5B4 369 aa13.52□□□□□ -0.25
LIG1-210ENST00000596332 CCDC24Q8N4L8 307 aa13.52□□□□□ -0.25
LIG1-210ENST00000596332 DNAAF4Q8WXU2 420 aa13.52□□□□□ -0.25
LIG1-210ENST00000596332 SETDB2Q96T68 719 aa13.52□□□□□ -0.25
LIG1-210ENST00000596332 AFDNP55196 1824 aaKnown RBP13.51□□□□□ -0.25
LIG1-210ENST00000596332 C10orf71Q711Q0 1435 aa13.51□□□□□ -0.25
LIG1-210ENST00000596332 KCNA3P22001 575 aa13.51□□□□□ -0.25
LIG1-210ENST00000596332 CASP7P55210 303 aa13.51□□□□□ -0.25
LIG1-210ENST00000596332 CWF19L2Q2TBE0 894 aaKnown RBP13.51□□□□□ -0.25
LIG1-210ENST00000596332 NPM2Q86SE8 214 aaKnown RBP13.51□□□□□ -0.25
LIG1-210ENST00000596332 ARHGAP45Q92619 1136 aa13.51□□□□□ -0.25
LIG1-210ENST00000596332 MYD88Q99836 296 aa13.51□□□□□ -0.25
LIG1-210ENST00000596332 ZNF652Q9Y2D9 606 aa13.51□□□□□ -0.25
LIG1-210ENST00000596332 PTPRCP08575 1304 aa13.5□□□□□ -0.25
LIG1-210ENST00000596332 KLRG2A4D1S0 409 aaPredicted RBP13.5□□□□□ -0.25
LIG1-210ENST00000596332 NEURL1BA8MQ27 555 aa13.5□□□□□ -0.25
LIG1-210ENST00000596332 DDX58O95786 925 aaKnown RBP13.5□□□□□ -0.25
LIG1-210ENST00000596332 SLC10A5Q5PT55 438 aa13.5□□□□□ -0.25
LIG1-210ENST00000596332 RCAN3Q9UKA8 241 aa13.5□□□□□ -0.25
LIG1-210ENST00000596332 PARP3Q9Y6F1 533 aa13.5□□□□□ -0.25
LIG1-210ENST00000596332 ANKRD36CQ5JPF3 1778 aa13.5□□□□□ -0.25
LIG1-210ENST00000596332 KIAA1551Q9HCM1 1747 aa13.5□□□□□ -0.25
LIG1-210ENST00000596332 ABCC12Q96J65 1359 aa13.49□□□□□ -0.25
LIG1-210ENST00000596332 IBTKQ9P2D0 1353 aaPredicted RBP13.49□□□□□ -0.25
LIG1-210ENST00000596332 H7C1W4 665 aa13.49□□□□□ -0.25
LIG1-210ENST00000596332 TRIM27P14373 513 aa13.49□□□□□ -0.25
LIG1-210ENST00000596332 POLD1P28340 1107 aa13.49□□□□□ -0.25
LIG1-210ENST00000596332 ERFEQ4G0M1 354 aa13.49□□□□□ -0.25
LIG1-210ENST00000596332 PARP10Q53GL7 1025 aa13.49□□□□□ -0.25
LIG1-210ENST00000596332 HSP90AB3PQ58FF7 597 aa13.49□□□□□ -0.25
LIG1-210ENST00000596332 C3orf67Q6ZVT6 689 aa13.49□□□□□ -0.25
LIG1-210ENST00000596332 NUTM1Q86Y26 1132 aa13.49□□□□□ -0.25
LIG1-210ENST00000596332 CCDC191Q8NCU4 936 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 6.1 ms