RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 DPEP1P16444 411 aa14.5□□□□□ -0.09
VRK3-210ENST00000596121 KCNA3P22001 575 aa14.5□□□□□ -0.09
VRK3-210ENST00000596121 NPM2Q86SE8 214 aaKnown RBP14.5□□□□□ -0.09
VRK3-210ENST00000596121 CCDC24Q8N4L8 307 aa14.5□□□□□ -0.09
VRK3-210ENST00000596121 CHPF2Q9P2E5 772 aa14.5□□□□□ -0.09
VRK3-210ENST00000596121 AFDNP55196 1824 aaKnown RBP14.5□□□□□ -0.09
VRK3-210ENST00000596121 BCORQ6W2J9 1755 aa14.5□□□□□ -0.09
VRK3-210ENST00000596121 CARMIL3Q8ND23 1372 aa14.49□□□□□ -0.09
VRK3-210ENST00000596121 IL16Q14005 1332 aa14.49□□□□□ -0.09
VRK3-210ENST00000596121 ZNF521Q96K83 1311 aa14.49□□□□□ -0.09
VRK3-210ENST00000596121 HDGFL1Q5TGJ6 251 aa14.49□□□□□ -0.09
VRK3-210ENST00000596121 CLEC4GQ6UXB4 293 aa14.49□□□□□ -0.09
VRK3-210ENST00000596121 WDR63Q8IWG1 891 aa14.49□□□□□ -0.09
VRK3-210ENST00000596121 DDX21Q9NR30 783 aaKnown RBP eCLIP14.49□□□□□ -0.09
VRK3-210ENST00000596121 NRXN2Q9P2S2 1712 aa14.49□□□□□ -0.09
VRK3-210ENST00000596121 MAP3K15Q6ZN16 1313 aa14.48□□□□□ -0.09
VRK3-210ENST00000596121 CHRNA5P30532 468 aa14.48□□□□□ -0.09
VRK3-210ENST00000596121 TGFB2P61812 414 aa14.48□□□□□ -0.09
VRK3-210ENST00000596121 PRR5LQ6MZQ0 368 aa14.48□□□□□ -0.09
VRK3-210ENST00000596121 COPS6Q7L5N1 327 aa14.48□□□□□ -0.09
VRK3-210ENST00000596121 PELP1Q8IZL8 1130 aaKnown RBP14.48□□□□□ -0.09
VRK3-210ENST00000596121 XAGE3Q8WTP9 111 aa14.48□□□□□ -0.09
VRK3-210ENST00000596121 ZBTB3Q9H5J0 574 aa14.48□□□□□ -0.09
VRK3-210ENST00000596121 ERVV-1B6SEH8 477 aa14.47□□□□□ -0.09
VRK3-210ENST00000596121 RGL2O15211 777 aa14.47□□□□□ -0.09
VRK3-210ENST00000596121 AIMP1Q12904 312 aaKnown RBP14.47□□□□□ -0.09
VRK3-210ENST00000596121 GPR162Q16538 588 aa14.47□□□□□ -0.09
VRK3-210ENST00000596121 SETDB2Q96T68 719 aa14.47□□□□□ -0.09
VRK3-210ENST00000596121 N4BP2Q86UW6 1770 aaPredicted RBP14.47□□□□□ -0.09
VRK3-210ENST00000596121 FANCIQ9NVI1 1328 aa14.46□□□□□ -0.09
VRK3-210ENST00000596121 KIF6Q6ZMV9 814 aa14.46□□□□□ -0.09
VRK3-210ENST00000596121 NIP7Q9Y221 180 aaKnown RBP eCLIP14.46□□□□□ -0.09
VRK3-210ENST00000596121 FAM177BA6PVY3 158 aa14.45□□□□□ -0.1
VRK3-210ENST00000596121 TCERG1O14776 1098 aaKnown RBP14.45□□□□□ -0.1
VRK3-210ENST00000596121 ZNF34Q8IZ26 560 aa14.45□□□□□ -0.1
VRK3-210ENST00000596121 DBF4Q9UBU7 674 aaPredicted RBP14.45□□□□□ -0.1
VRK3-210ENST00000596121 ZNF652Q9Y2D9 606 aa14.45□□□□□ -0.1
VRK3-210ENST00000596121 UBN2Q6ZU65 1347 aa14.44□□□□□ -0.1
VRK3-210ENST00000596121 GPTP24298 496 aa14.44□□□□□ -0.1
VRK3-210ENST00000596121 EXOSC9Q06265 439 aaKnown RBP14.44□□□□□ -0.1
VRK3-210ENST00000596121 GIGYF2Q6Y7W6 1299 aaKnown RBP14.44□□□□□ -0.1
VRK3-210ENST00000596121 PHAXQ9H814 394 aaKnown RBP14.44□□□□□ -0.1
VRK3-210ENST00000596121 NUP98P52948 1817 aa14.43□□□□□ -0.1
VRK3-210ENST00000596121 ATP10DQ9P241 1426 aa14.43□□□□□ -0.1
VRK3-210ENST00000596121 DCAF8L1A6NGE4 600 aa14.43□□□□□ -0.1
VRK3-210ENST00000596121 SUSD4Q5VX71 490 aa14.43□□□□□ -0.1
VRK3-210ENST00000596121 NBPF5PQ86XG9 351 aaPredicted RBP14.43□□□□□ -0.1
VRK3-210ENST00000596121 ANKRD31Q8N7Z5 1873 aa14.42□□□□□ -0.1
VRK3-210ENST00000596121 VAMP4O75379 141 aa14.42□□□□□ -0.1
VRK3-210ENST00000596121 TWISTNBQ3B726 338 aaPredicted RBP14.42□□□□□ -0.1
VRK3-210ENST00000596121 CNBD1Q8NA66 436 aa14.42□□□□□ -0.1
VRK3-210ENST00000596121 BRIP1Q9BX63 1249 aa14.42□□□□□ -0.1
VRK3-210ENST00000596121 HYPKQ9NX55 129 aa14.42□□□□□ -0.1
VRK3-210ENST00000596121 G2E3Q7L622 706 aa14.41□□□□□ -0.1
VRK3-210ENST00000596121 NUTM1Q86Y26 1132 aa14.41□□□□□ -0.1
VRK3-210ENST00000596121 C2CD5Q86YS7 1000 aa14.41□□□□□ -0.1
VRK3-210ENST00000596121 ZNF428Q96B54 188 aa14.41□□□□□ -0.1
VRK3-210ENST00000596121 CDCA7LQ96GN5 454 aa14.41□□□□□ -0.1
VRK3-210ENST00000596121 BCS1LQ9Y276 419 aa14.41□□□□□ -0.1
VRK3-210ENST00000596121 BRCA1P38398 1863 aaKnown RBP14.4□□□□□ -0.1
VRK3-210ENST00000596121 ABCC12Q96J65 1359 aa14.4□□□□□ -0.1
VRK3-210ENST00000596121 GOLGA2Q08379 1002 aa14.4□□□□□ -0.1
VRK3-210ENST00000596121 TCIRG1Q13488 830 aa14.4□□□□□ -0.1
VRK3-210ENST00000596121 ERFEQ4G0M1 354 aa14.4□□□□□ -0.1
VRK3-210ENST00000596121 CCDC30Q5VVM6 783 aa14.4□□□□□ -0.1
VRK3-210ENST00000596121 ANKRD13DQ6ZTN6 518 aa14.4□□□□□ -0.1
VRK3-210ENST00000596121 PLBD2Q8NHP8 589 aa14.4□□□□□ -0.1
VRK3-210ENST00000596121 PIM2Q9P1W9 311 aa14.4□□□□□ -0.1
VRK3-210ENST00000596121 KLRG2A4D1S0 409 aaPredicted RBP14.39□□□□□ -0.11
VRK3-210ENST00000596121 GRIN3BO60391 1043 aa14.39□□□□□ -0.11
VRK3-210ENST00000596121 NTSR2O95665 410 aa14.39□□□□□ -0.11
VRK3-210ENST00000596121 TPTE2Q6XPS3 522 aa14.39□□□□□ -0.11
VRK3-210ENST00000596121 SYNE4Q8N205 404 aa14.39□□□□□ -0.11
VRK3-210ENST00000596121 H0YIN7 160 aa14.38□□□□□ -0.11
VRK3-210ENST00000596121 PDE6BP35913 854 aa14.38□□□□□ -0.11
VRK3-210ENST00000596121 ST5P78524 1137 aa14.38□□□□□ -0.11
VRK3-210ENST00000596121 SLFN5Q08AF3 891 aa14.38□□□□□ -0.11
VRK3-210ENST00000596121 DALRD3Q5D0E6 543 aaKnown RBP14.38□□□□□ -0.11
VRK3-210ENST00000596121 C3orf67Q6ZVT6 689 aa14.38□□□□□ -0.11
VRK3-210ENST00000596121 NLRP10Q86W26 655 aa14.38□□□□□ -0.11
VRK3-210ENST00000596121 ISCA1Q9BUE6 129 aa14.38□□□□□ -0.11
VRK3-210ENST00000596121 MYH16Q9H6N6 1097 aa14.38□□□□□ -0.11
VRK3-210ENST00000596121 COL11A2P13942 1736 aaPredicted RBP14.38□□□□□ -0.11
VRK3-210ENST00000596121 ATP5J2-PTCD1G3V325 749 aa14.37□□□□□ -0.11
VRK3-210ENST00000596121 SRGNP10124 158 aa14.37□□□□□ -0.11
VRK3-210ENST00000596121 NPHP1O15259 732 aa14.36□□□□□ -0.11
VRK3-210ENST00000596121 SLC4A2P04920 1241 aa14.36□□□□□ -0.11
VRK3-210ENST00000596121 PARP10Q53GL7 1025 aa14.36□□□□□ -0.11
VRK3-210ENST00000596121 TRMT2AQ8IZ69 625 aaKnown RBP14.36□□□□□ -0.11
VRK3-210ENST00000596121 IBTKQ9P2D0 1353 aaPredicted RBP14.35□□□□□ -0.11
VRK3-210ENST00000596121 DLEC1Q9Y238 1755 aa14.35□□□□□ -0.11
VRK3-210ENST00000596121 YY1P25490 414 aa14.35□□□□□ -0.11
VRK3-210ENST00000596121 HSP90AB3PQ58FF7 597 aa14.35□□□□□ -0.11
VRK3-210ENST00000596121 SLC10A5Q5PT55 438 aa14.35□□□□□ -0.11
VRK3-210ENST00000596121 RIC3Q7Z5B4 369 aa14.35□□□□□ -0.11
VRK3-210ENST00000596121 TTLL6Q8N841 843 aa14.35□□□□□ -0.11
VRK3-210ENST00000596121 ZNF622Q969S3 477 aaKnown RBP eCLIP14.35□□□□□ -0.11
VRK3-210ENST00000596121 UTP14AQ9BVJ6 771 aaKnown RBP14.35□□□□□ -0.11
VRK3-210ENST00000596121 NYXQ9GZU5 481 aa14.35□□□□□ -0.11
VRK3-210ENST00000596121 TNRC6CQ9HCJ0 1690 aaKnown RBP14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms