RNA–Protein interactions for RNA: ENST00000595993.5

USHBP1-205, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 578 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-205ENST00000595993 SETDB2Q96T68 719 aa21.17■□□□□ 0.98
USHBP1-205ENST00000595993 CACNA1SQ13698 1873 aa21.16■□□□□ 0.98
USHBP1-205ENST00000595993 SRGNP10124 158 aa21.16■□□□□ 0.98
USHBP1-205ENST00000595993 STYK1Q6J9G0 422 aa21.16■□□□□ 0.98
USHBP1-205ENST00000595993 CCDC24Q8N4L8 307 aa21.16■□□□□ 0.98
USHBP1-205ENST00000595993 CNBD1Q8NA66 436 aa21.16■□□□□ 0.98
USHBP1-205ENST00000595993 USP16Q9Y5T5 823 aa21.16■□□□□ 0.98
USHBP1-205ENST00000595993 RGL2O15211 777 aa21.15■□□□□ 0.98
USHBP1-205ENST00000595993 CLEC4GQ6UXB4 293 aa21.15■□□□□ 0.98
USHBP1-205ENST00000595993 DZIP3Q86Y13 1208 aaKnown RBP21.15■□□□□ 0.98
USHBP1-205ENST00000595993 ZNF330Q9Y3S2 320 aaPredicted RBP21.15■□□□□ 0.98
USHBP1-205ENST00000595993 CNKSR1Q969H4 720 aa21.14■□□□□ 0.97
USHBP1-205ENST00000595993 ERFEQ4G0M1 354 aa21.13■□□□□ 0.97
USHBP1-205ENST00000595993 DPY19L2Q6NUT2 758 aa21.13■□□□□ 0.97
USHBP1-205ENST00000595993 PRPF40BQ6NWY9 871 aaKnown RBP21.13■□□□□ 0.97
USHBP1-205ENST00000595993 TAOK3Q9H2K8 898 aa21.13■□□□□ 0.97
USHBP1-205ENST00000595993 PRAMEF22A3QJZ6 481 aa21.12■□□□□ 0.97
USHBP1-205ENST00000595993 KLRG2A4D1S0 409 aaPredicted RBP21.12■□□□□ 0.97
USHBP1-205ENST00000595993 ST5P78524 1137 aa21.12■□□□□ 0.97
USHBP1-205ENST00000595993 C7orf43Q8WVR3 580 aa21.12■□□□□ 0.97
USHBP1-205ENST00000595993 MASTLQ96GX5 879 aa21.12■□□□□ 0.97
USHBP1-205ENST00000595993 LAMB4A4D0S4 1761 aa21.11■□□□□ 0.97
USHBP1-205ENST00000595993 SNRPA1P09661 255 aaKnown RBP21.11■□□□□ 0.97
USHBP1-205ENST00000595993 COL13A1Q5TAT6 717 aaPredicted RBP21.11■□□□□ 0.97
USHBP1-205ENST00000595993 SOGA3Q5TF21 947 aa21.11■□□□□ 0.97
USHBP1-205ENST00000595993 NPM2Q86SE8 214 aaKnown RBP21.11■□□□□ 0.97
USHBP1-205ENST00000595993 NBPF26B4DH59 902 aa21.1■□□□□ 0.97
USHBP1-205ENST00000595993 HTATSF1O43719 755 aaKnown RBP21.1■□□□□ 0.97
USHBP1-205ENST00000595993 NBPF10Q6P3W6 841 aaKnown RBP21.1■□□□□ 0.97
USHBP1-205ENST00000595993 NBPF15Q8N660 670 aa21.1■□□□□ 0.97
USHBP1-205ENST00000595993 ZNF219Q9P2Y4 722 aaPredicted RBP21.1■□□□□ 0.97
USHBP1-205ENST00000595993 PIP4K2AP48426 406 aaPredicted RBP21.09■□□□□ 0.97
USHBP1-205ENST00000595993 MCM10Q7L590 875 aa21.09■□□□□ 0.97
USHBP1-205ENST00000595993 DLG5Q8TDM6 1919 aa21.09■□□□□ 0.97
USHBP1-205ENST00000595993 ZNF652Q9Y2D9 606 aa21.08■□□□□ 0.97
USHBP1-205ENST00000595993 SCN4AP35499 1836 aa21.08■□□□□ 0.96
USHBP1-205ENST00000595993 NBPF5PQ86XG9 351 aaPredicted RBP21.07■□□□□ 0.96
USHBP1-205ENST00000595993 RTF1Q92541 710 aaKnown RBP21.07■□□□□ 0.96
USHBP1-205ENST00000595993 PLEKHF1Q96S99 279 aa21.07■□□□□ 0.96
USHBP1-205ENST00000595993 KDM3BQ7LBC6 1761 aa21.07■□□□□ 0.96
USHBP1-205ENST00000595993 NPR1P16066 1061 aa21.06■□□□□ 0.96
USHBP1-205ENST00000595993 CCDC184Q52MB2 194 aa21.06■□□□□ 0.96
USHBP1-205ENST00000595993 L3MBTL3Q96JM7 780 aaPredicted RBP21.06■□□□□ 0.96
USHBP1-205ENST00000595993 SNED1Q8TER0 1413 aa21.05■□□□□ 0.96
USHBP1-205ENST00000595993 NPHP1O15259 732 aa21.05■□□□□ 0.96
USHBP1-205ENST00000595993 DDNO94850 711 aaPredicted RBP21.05■□□□□ 0.96
USHBP1-205ENST00000595993 DCTN1Q14203 1278 aa21.05■□□□□ 0.96
USHBP1-205ENST00000595993 CHADLQ6NUI6 762 aa21.05■□□□□ 0.96
USHBP1-205ENST00000595993 ANP32CO43423 234 aa21.04■□□□□ 0.96
USHBP1-205ENST00000595993 CCDC93Q567U6 631 aa21.04■□□□□ 0.96
USHBP1-205ENST00000595993 ADAMTSL1Q8N6G6 1762 aa21.03■□□□□ 0.96
USHBP1-205ENST00000595993 POTEIP0CG38 1075 aa21.03■□□□□ 0.96
USHBP1-205ENST00000595993 POTEJP0CG39 1038 aa21.03■□□□□ 0.96
USHBP1-205ENST00000595993 TAF7Q15545 349 aaPredicted RBP21.03■□□□□ 0.96
USHBP1-205ENST00000595993 TPTE2Q6XPS3 522 aa21.03■□□□□ 0.96
USHBP1-205ENST00000595993 CREBZFQ9NS37 354 aa21.03■□□□□ 0.96
USHBP1-205ENST00000595993 NIP7Q9Y221 180 aaKnown RBP eCLIP21.03■□□□□ 0.96
USHBP1-205ENST00000595993 HSPA1AP0DMV8 641 aaKnown RBP21.02■□□□□ 0.96
USHBP1-205ENST00000595993 HSPA1BP0DMV9 641 aaKnown RBP21.02■□□□□ 0.96
USHBP1-205ENST00000595993 FKBP4Q02790 459 aaKnown RBP eCLIP21.02■□□□□ 0.96
USHBP1-205ENST00000595993 IQCA1LA6NCM1 817 aa21.01■□□□□ 0.95
USHBP1-205ENST00000595993 HLFQ16534 295 aa21.01■□□□□ 0.95
USHBP1-205ENST00000595993 PASKQ96RG2 1323 aa21.01■□□□□ 0.95
USHBP1-205ENST00000595993 NUP98P52948 1817 aa21■□□□□ 0.95
USHBP1-205ENST00000595993 WDR43Q15061 677 aaKnown RBP eCLIP21■□□□□ 0.95
USHBP1-205ENST00000595993 RIC1Q4ADV7 1423 aa21■□□□□ 0.95
USHBP1-205ENST00000595993 CRY2Q49AN0 593 aa20.99■□□□□ 0.95
USHBP1-205ENST00000595993 TAF1DQ9H5J8 278 aaPredicted RBP20.99■□□□□ 0.95
USHBP1-205ENST00000595993 ADAMTS8Q9UP79 889 aa20.99■□□□□ 0.95
USHBP1-205ENST00000595993 ERVV-1B6SEH8 477 aa20.98■□□□□ 0.95
USHBP1-205ENST00000595993 LDHDQ86WU2 507 aa20.98■□□□□ 0.95
USHBP1-205ENST00000595993 CCDC146Q8IYE0 955 aa20.98■□□□□ 0.95
USHBP1-205ENST00000595993 RTKN2Q8IZC4 609 aa20.98■□□□□ 0.95
USHBP1-205ENST00000595993 ZNF541Q9H0D2 1346 aa20.98■□□□□ 0.95
USHBP1-205ENST00000595993 MAPK8IP3Q9UPT6 1336 aa20.98■□□□□ 0.95
USHBP1-205ENST00000595993 IBTKQ9P2D0 1353 aaPredicted RBP20.97■□□□□ 0.95
USHBP1-205ENST00000595993 NFE2L2Q16236 605 aa20.97■□□□□ 0.95
USHBP1-205ENST00000595993 OLFM4Q6UX06 510 aa20.97■□□□□ 0.95
USHBP1-205ENST00000595993 TNS4Q8IZW8 715 aa20.97■□□□□ 0.95
USHBP1-205ENST00000595993 PNNQ9H307 717 aaKnown RBP20.97■□□□□ 0.95
USHBP1-205ENST00000595993 ABCC12Q96J65 1359 aa20.97■□□□□ 0.95
USHBP1-205ENST00000595993 FZD9O00144 591 aa20.96■□□□□ 0.95
USHBP1-205ENST00000595993 NEFMP07197 916 aa20.96■□□□□ 0.95
USHBP1-205ENST00000595993 ALDH1B1P30837 517 aa20.96■□□□□ 0.95
USHBP1-205ENST00000595993 PNISRQ8TF01 805 aaKnown RBP20.96■□□□□ 0.95
USHBP1-205ENST00000595993 ZNF277Q9NRM2 450 aaPredicted RBP20.96■□□□□ 0.95
USHBP1-205ENST00000595993 MIS18AQ9NYP9 233 aa20.96■□□□□ 0.95
USHBP1-205ENST00000595993 CNTNAP1P78357 1384 aa20.96■□□□□ 0.95
USHBP1-205ENST00000595993 ITGBL1O95965 494 aaPredicted RBP20.95■□□□□ 0.94
USHBP1-205ENST00000595993 MAP3K15Q6ZN16 1313 aa20.95■□□□□ 0.94
USHBP1-205ENST00000595993 COL4A5P29400 1685 aa20.94■□□□□ 0.94
USHBP1-205ENST00000595993 EIF4A1P60842 406 aaKnown RBP20.94■□□□□ 0.94
USHBP1-205ENST00000595993 PSMD1Q99460 953 aa20.94■□□□□ 0.94
USHBP1-205ENST00000595993 NYXQ9GZU5 481 aa20.94■□□□□ 0.94
USHBP1-205ENST00000595993 FAM177BA6PVY3 158 aa20.93■□□□□ 0.94
USHBP1-205ENST00000595993 HOXA10P31260 410 aaPredicted RBP20.93■□□□□ 0.94
USHBP1-205ENST00000595993 IARSP41252 1262 aaKnown RBP20.93■□□□□ 0.94
USHBP1-205ENST00000595993 MRS2Q9HD23 443 aa20.93■□□□□ 0.94
USHBP1-205ENST00000595993 MKRN1Q9UHC7 482 aaKnown RBP20.93■□□□□ 0.94
USHBP1-205ENST00000595993 SYNE4Q8N205 404 aa20.92■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms