RNA–Protein interactions for RNA: ENST00000595803.5

SHKBP1-209, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 773 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-209ENST00000595803 ITGB4P16144 1822 aa16.59■□□□□ 0.25
SHKBP1-209ENST00000595803 TRIM27P14373 513 aa16.59■□□□□ 0.25
SHKBP1-209ENST00000595803 VSIG10Q8N0Z9 540 aa16.59■□□□□ 0.25
SHKBP1-209ENST00000595803 SMARCC1Q92922 1105 aaPredicted RBP16.59■□□□□ 0.25
SHKBP1-209ENST00000595803 NMRK2Q9NPI5 230 aa16.59■□□□□ 0.25
SHKBP1-209ENST00000595803 TNNQ9UQP3 1299 aa16.59■□□□□ 0.25
SHKBP1-209ENST00000595803 G2E3Q7L622 706 aa16.58■□□□□ 0.24
SHKBP1-209ENST00000595803 PPP4R2Q9NY27 417 aa16.58■□□□□ 0.24
SHKBP1-209ENST00000595803 CHPF2Q9P2E5 772 aa16.58■□□□□ 0.24
SHKBP1-209ENST00000595803 CCNL1Q9UK58 526 aaPredicted RBP16.58■□□□□ 0.24
SHKBP1-209ENST00000595803 COG6Q9Y2V7 657 aa16.58■□□□□ 0.24
SHKBP1-209ENST00000595803 RBM46Q8TBY0 533 aaKnown RBP16.57■□□□□ 0.24
SHKBP1-209ENST00000595803 DDX21Q9NR30 783 aaKnown RBP eCLIP16.57■□□□□ 0.24
SHKBP1-209ENST00000595803 HYPKQ9NX55 129 aa16.57■□□□□ 0.24
SHKBP1-209ENST00000595803 RLBP1P12271 317 aa16.56■□□□□ 0.24
SHKBP1-209ENST00000595803 FLIIQ13045 1269 aa16.56■□□□□ 0.24
SHKBP1-209ENST00000595803 FKBP5Q13451 457 aaPredicted RBP16.56■□□□□ 0.24
SHKBP1-209ENST00000595803 C5P01031 1676 aa16.56■□□□□ 0.24
SHKBP1-209ENST00000595803 STARD3NLO95772 234 aa16.55■□□□□ 0.24
SHKBP1-209ENST00000595803 MVPQ14764 893 aaKnown RBP16.55■□□□□ 0.24
SHKBP1-209ENST00000595803 PHAXQ9H814 394 aaKnown RBP16.55■□□□□ 0.24
SHKBP1-209ENST00000595803 ANXA1P04083 346 aa16.54■□□□□ 0.24
SHKBP1-209ENST00000595803 MYL6BP14649 208 aa16.54■□□□□ 0.24
SHKBP1-209ENST00000595803 ITPRIPQ8IWB1 547 aa16.54■□□□□ 0.24
SHKBP1-209ENST00000595803 DNAJC10Q8IXB1 793 aa16.54■□□□□ 0.24
SHKBP1-209ENST00000595803 TMEM57Q8N5G2 664 aa16.54■□□□□ 0.24
SHKBP1-209ENST00000595803 CACNA1FO60840 1977 aa16.54■□□□□ 0.24
SHKBP1-209ENST00000595803 KCPQ6ZWJ8 1503 aa16.54■□□□□ 0.24
SHKBP1-209ENST00000595803 ERBB4Q15303 1308 aa16.53■□□□□ 0.24
SHKBP1-209ENST00000595803 PDIA6Q15084 440 aa16.53■□□□□ 0.24
SHKBP1-209ENST00000595803 CHMP4BQ9H444 224 aaKnown RBP16.53■□□□□ 0.24
SHKBP1-209ENST00000595803 DDX19BQ9UMR2 479 aa16.53■□□□□ 0.24
SHKBP1-209ENST00000595803 UBR2Q8IWV8 1755 aa16.52■□□□□ 0.24
SHKBP1-209ENST00000595803 DDX58O95786 925 aaKnown RBP16.52■□□□□ 0.24
SHKBP1-209ENST00000595803 A1BGP04217 495 aa16.52■□□□□ 0.24
SHKBP1-209ENST00000595803 HSPA1AP0DMV8 641 aaKnown RBP16.52■□□□□ 0.24
SHKBP1-209ENST00000595803 HSPA1BP0DMV9 641 aaKnown RBP16.52■□□□□ 0.24
SHKBP1-209ENST00000595803 ATP6V1AP38606 617 aa16.52■□□□□ 0.24
SHKBP1-209ENST00000595803 FSTL1Q12841 308 aa16.52■□□□□ 0.24
SHKBP1-209ENST00000595803 AIMP1Q12904 312 aaKnown RBP16.52■□□□□ 0.24
SHKBP1-209ENST00000595803 PROSER3Q2NL68 480 aa16.52■□□□□ 0.24
SHKBP1-209ENST00000595803 SLC4A10Q6U841 1118 aa16.52■□□□□ 0.24
SHKBP1-209ENST00000595803 ABCC4O15439 1325 aa16.51■□□□□ 0.23
SHKBP1-209ENST00000595803 LOC102724428A0A0B4J2F2 783 aa16.51■□□□□ 0.23
SHKBP1-209ENST00000595803 SIK1P57059 783 aa16.51■□□□□ 0.23
SHKBP1-209ENST00000595803 AAMPQ13685 434 aa16.51■□□□□ 0.23
SHKBP1-209ENST00000595803 C16orf71Q8IYS4 520 aaPredicted RBP16.51■□□□□ 0.23
SHKBP1-209ENST00000595803 PALLDQ8WX93 1383 aa16.51■□□□□ 0.23
SHKBP1-209ENST00000595803 F6X3S4 739 aa16.5■□□□□ 0.23
SHKBP1-209ENST00000595803 CCT4P50991 539 aaKnown RBP16.5■□□□□ 0.23
SHKBP1-209ENST00000595803 INTS3Q68E01 1043 aaKnown RBP16.5■□□□□ 0.23
SHKBP1-209ENST00000595803 COPS6Q7L5N1 327 aa16.5■□□□□ 0.23
SHKBP1-209ENST00000595803 CCDC136Q96JN2 1154 aa16.5■□□□□ 0.23
SHKBP1-209ENST00000595803 SLC4A9Q96Q91 983 aa16.5■□□□□ 0.23
SHKBP1-209ENST00000595803 CYP19A1P11511 503 aaPredicted RBP16.49■□□□□ 0.23
SHKBP1-209ENST00000595803 PIP4K2AP48426 406 aaPredicted RBP16.49■□□□□ 0.23
SHKBP1-209ENST00000595803 KSR2Q6VAB6 950 aa16.49■□□□□ 0.23
SHKBP1-209ENST00000595803 XAGE3Q8WTP9 111 aa16.49■□□□□ 0.23
SHKBP1-209ENST00000595803 PCDH10Q9P2E7 1040 aa16.49■□□□□ 0.23
SHKBP1-209ENST00000595803 PI4KAP2A4QPH2 592 aa16.48■□□□□ 0.23
SHKBP1-209ENST00000595803 NBPF26B4DH59 902 aa16.48■□□□□ 0.23
SHKBP1-209ENST00000595803 NBPF10Q6P3W6 841 aaKnown RBP16.48■□□□□ 0.23
SHKBP1-209ENST00000595803 RIC3Q7Z5B4 369 aa16.48■□□□□ 0.23
SHKBP1-209ENST00000595803 NBPF15Q8N660 670 aa16.48■□□□□ 0.23
SHKBP1-209ENST00000595803 PI4KAP1Q8N8J0 262 aa16.48■□□□□ 0.23
SHKBP1-209ENST00000595803 FLAD1Q8NFF5 587 aa16.48■□□□□ 0.23
SHKBP1-209ENST00000595803 DNAAF4Q8WXU2 420 aa16.48■□□□□ 0.23
SHKBP1-209ENST00000595803 TAF1LQ8IZX4 1826 aa16.47■□□□□ 0.23
SHKBP1-209ENST00000595803 B4GALNT3Q6L9W6 998 aa16.47■□□□□ 0.23
SHKBP1-209ENST00000595803 ANKRD13DQ6ZTN6 518 aa16.47■□□□□ 0.23
SHKBP1-209ENST00000595803 NPM2Q86SE8 214 aaKnown RBP16.47■□□□□ 0.23
SHKBP1-209ENST00000595803 KIAA1551Q9HCM1 1747 aa16.47■□□□□ 0.23
SHKBP1-209ENST00000595803 PXDNLA1KZ92 1463 aa16.47■□□□□ 0.23
SHKBP1-209ENST00000595803 ZBTB7BO15156 539 aaPredicted RBP16.46■□□□□ 0.23
SHKBP1-209ENST00000595803 MAP3K2Q9Y2U5 619 aa16.46■□□□□ 0.23
SHKBP1-209ENST00000595803 LAMB4A4D0S4 1761 aa16.46■□□□□ 0.22
SHKBP1-209ENST00000595803 C4BP0C0L5 1744 aa16.45■□□□□ 0.22
SHKBP1-209ENST00000595803 LRP10Q7Z4F1 713 aa16.45■□□□□ 0.22
SHKBP1-209ENST00000595803 AMIGO3Q86WK7 504 aa16.45■□□□□ 0.22
SHKBP1-209ENST00000595803 SRCIN1Q9C0H9 1055 aa16.45■□□□□ 0.22
SHKBP1-209ENST00000595803 ZNF330Q9Y3S2 320 aaPredicted RBP16.45■□□□□ 0.22
SHKBP1-209ENST00000595803 ITPK1Q13572 414 aa16.44■□□□□ 0.22
SHKBP1-209ENST00000595803 PLBD2Q8NHP8 589 aa16.44■□□□□ 0.22
SHKBP1-209ENST00000595803 C10orf71Q711Q0 1435 aa16.44■□□□□ 0.22
SHKBP1-209ENST00000595803 UBR3Q6ZT12 1888 aa16.44■□□□□ 0.22
SHKBP1-209ENST00000595803 NEXNQ0ZGT2 675 aa16.43■□□□□ 0.22
SHKBP1-209ENST00000595803 ZBTB40Q9NUA8 1239 aa16.43■□□□□ 0.22
SHKBP1-209ENST00000595803 CCDC87Q9NVE4 849 aa16.43■□□□□ 0.22
SHKBP1-209ENST00000595803 BCS1LQ9Y276 419 aa16.43■□□□□ 0.22
SHKBP1-209ENST00000595803 N4BP2Q86UW6 1770 aaPredicted RBP16.43■□□□□ 0.22
SHKBP1-209ENST00000595803 TNRC6CQ9HCJ0 1690 aaKnown RBP16.43■□□□□ 0.22
SHKBP1-209ENST00000595803 KIF13BQ9NQT8 1826 aa16.42■□□□□ 0.22
SHKBP1-209ENST00000595803 ALDH1L1O75891 902 aa16.42■□□□□ 0.22
SHKBP1-209ENST00000595803 PHF14O94880 888 aa16.42■□□□□ 0.22
SHKBP1-209ENST00000595803 IL6STP40189 918 aaPredicted RBP16.42■□□□□ 0.22
SHKBP1-209ENST00000595803 CRKLP46109 303 aaKnown RBP16.42■□□□□ 0.22
SHKBP1-209ENST00000595803 BEND3Q5T5X7 828 aa16.42■□□□□ 0.22
SHKBP1-209ENST00000595803 INTS5Q6P9B9 1019 aaKnown RBP16.42■□□□□ 0.22
SHKBP1-209ENST00000595803 KIF6Q6ZMV9 814 aa16.42■□□□□ 0.22
SHKBP1-209ENST00000595803 TTLL7Q6ZT98 887 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms