RNA–Protein interactions for RNA: ENST00000595242.3

SCAF1-202, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 463 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-202ENST00000595242 UBR2Q8IWV8 1755 aa17.31■□□□□ 0.36
SCAF1-202ENST00000595242 CCER2I3L3R5 266 aa17.31■□□□□ 0.36
SCAF1-202ENST00000595242 SOGA3Q5TF21 947 aa17.31■□□□□ 0.36
SCAF1-202ENST00000595242 MAP1SQ66K74 1059 aaPredicted RBP17.31■□□□□ 0.36
SCAF1-202ENST00000595242 PRR5LQ6MZQ0 368 aa17.31■□□□□ 0.36
SCAF1-202ENST00000595242 BEGAINQ9BUH8 593 aa17.31■□□□□ 0.36
SCAF1-202ENST00000595242 SLC52A2Q9HAB3 445 aa17.31■□□□□ 0.36
SCAF1-202ENST00000595242 HACL1Q9UJ83 578 aa17.31■□□□□ 0.36
SCAF1-202ENST00000595242 SCN7AQ01118 1682 aa17.31■□□□□ 0.36
SCAF1-202ENST00000595242 EPHX2P34913 555 aa17.3■□□□□ 0.36
SCAF1-202ENST00000595242 PRPF40BQ6NWY9 871 aaKnown RBP17.3■□□□□ 0.36
SCAF1-202ENST00000595242 CFAP44Q96MT7 982 aa17.3■□□□□ 0.36
SCAF1-202ENST00000595242 KIF7Q2M1P5 1343 aa17.29■□□□□ 0.36
SCAF1-202ENST00000595242 STYK1Q6J9G0 422 aa17.29■□□□□ 0.36
SCAF1-202ENST00000595242 PNMA8AQ86V59 439 aaPredicted RBP17.29■□□□□ 0.36
SCAF1-202ENST00000595242 LGR6Q9HBX8 967 aa17.29■□□□□ 0.36
SCAF1-202ENST00000595242 ZNF541Q9H0D2 1346 aa17.28■□□□□ 0.36
SCAF1-202ENST00000595242 EIF5P55010 431 aaKnown RBP17.28■□□□□ 0.36
SCAF1-202ENST00000595242 AKAP4Q5JQC9 854 aa17.28■□□□□ 0.36
SCAF1-202ENST00000595242 SULT6B1Q6IMI4 303 aa17.28■□□□□ 0.36
SCAF1-202ENST00000595242 MRC1P22897 1456 aa17.27■□□□□ 0.36
SCAF1-202ENST00000595242 A0A087WZG4 1122 aa17.27■□□□□ 0.36
SCAF1-202ENST00000595242 ANP32CO43423 234 aa17.27■□□□□ 0.36
SCAF1-202ENST00000595242 SRGNP10124 158 aa17.27■□□□□ 0.36
SCAF1-202ENST00000595242 VSIG10Q8N0Z9 540 aa17.27■□□□□ 0.36
SCAF1-202ENST00000595242 RNF123Q5XPI4 1314 aa17.26■□□□□ 0.35
SCAF1-202ENST00000595242 NPHP1O15259 732 aa17.26■□□□□ 0.35
SCAF1-202ENST00000595242 PAXIP1Q6ZW49 1069 aaPredicted RBP17.26■□□□□ 0.35
SCAF1-202ENST00000595242 MASTLQ96GX5 879 aa17.26■□□□□ 0.35
SCAF1-202ENST00000595242 CAPNS2Q96L46 248 aa17.26■□□□□ 0.35
SCAF1-202ENST00000595242 GPR101Q96P66 508 aaPredicted RBP17.26■□□□□ 0.35
SCAF1-202ENST00000595242 DDX21Q9NR30 783 aaKnown RBP eCLIP17.26■□□□□ 0.35
SCAF1-202ENST00000595242 ECE1P42892 770 aa17.25■□□□□ 0.35
SCAF1-202ENST00000595242 GRM1Q13255 1194 aa17.25■□□□□ 0.35
SCAF1-202ENST00000595242 CNBD1Q8NA66 436 aa17.25■□□□□ 0.35
SCAF1-202ENST00000595242 TSKSQ9UJT2 592 aa17.25■□□□□ 0.35
SCAF1-202ENST00000595242 TBC1D2BQ9UPU7 963 aa17.25■□□□□ 0.35
SCAF1-202ENST00000595242 LTBP1Q14766 1721 aa17.24■□□□□ 0.35
SCAF1-202ENST00000595242 STARD3NLO95772 234 aa17.24■□□□□ 0.35
SCAF1-202ENST00000595242 CCDC93Q567U6 631 aa17.24■□□□□ 0.35
SCAF1-202ENST00000595242 C7orf43Q8WVR3 580 aa17.24■□□□□ 0.35
SCAF1-202ENST00000595242 SETDB2Q96T68 719 aa17.24■□□□□ 0.35
SCAF1-202ENST00000595242 ZNF277Q9NRM2 450 aaPredicted RBP17.24■□□□□ 0.35
SCAF1-202ENST00000595242 RNMTO43148 476 aaKnown RBP17.23■□□□□ 0.35
SCAF1-202ENST00000595242 ST5P78524 1137 aa17.23■□□□□ 0.35
SCAF1-202ENST00000595242 FKBP4Q02790 459 aaKnown RBP eCLIP17.23■□□□□ 0.35
SCAF1-202ENST00000595242 CYP4F22Q6NT55 531 aa17.23■□□□□ 0.35
SCAF1-202ENST00000595242 MCOLN1Q9GZU1 580 aa17.23■□□□□ 0.35
SCAF1-202ENST00000595242 ZNF330Q9Y3S2 320 aaPredicted RBP17.23■□□□□ 0.35
SCAF1-202ENST00000595242 BCORQ6W2J9 1755 aa17.23■□□□□ 0.35
SCAF1-202ENST00000595242 FZD9O00144 591 aa17.21■□□□□ 0.35
SCAF1-202ENST00000595242 FMR1Q06787 632 aaKnown RBP eCLIP17.21■□□□□ 0.35
SCAF1-202ENST00000595242 GPC2Q8N158 579 aa17.21■□□□□ 0.35
SCAF1-202ENST00000595242 MAP2K2P36507 400 aa17.19■□□□□ 0.34
SCAF1-202ENST00000595242 OLFM4Q6UX06 510 aa17.19■□□□□ 0.34
SCAF1-202ENST00000595242 YTHDC1Q96MU7 727 aaKnown RBP17.19■□□□□ 0.34
SCAF1-202ENST00000595242 AOC2O75106 756 aa17.18■□□□□ 0.34
SCAF1-202ENST00000595242 IL13P35225 146 aa17.18■□□□□ 0.34
SCAF1-202ENST00000595242 IL6STP40189 918 aaPredicted RBP17.18■□□□□ 0.34
SCAF1-202ENST00000595242 IARSP41252 1262 aaKnown RBP17.18■□□□□ 0.34
SCAF1-202ENST00000595242 CST9Q5W186 159 aa17.18■□□□□ 0.34
SCAF1-202ENST00000595242 RTKN2Q8IZC4 609 aa17.18■□□□□ 0.34
SCAF1-202ENST00000595242 TTC5Q8N0Z6 440 aa17.18■□□□□ 0.34
SCAF1-202ENST00000595242 POLR3GLQ9BT43 218 aa17.18■□□□□ 0.34
SCAF1-202ENST00000595242 CA12O43570 354 aa17.17■□□□□ 0.34
SCAF1-202ENST00000595242 NPR1P16066 1061 aa17.17■□□□□ 0.34
SCAF1-202ENST00000595242 DGKZQ13574 1117 aa17.17■□□□□ 0.34
SCAF1-202ENST00000595242 TLL2Q9Y6L7 1015 aa17.17■□□□□ 0.34
SCAF1-202ENST00000595242 SIPA1L3O60292 1781 aaPredicted RBP17.16■□□□□ 0.34
SCAF1-202ENST00000595242 CAMTA2O94983 1202 aa17.16■□□□□ 0.34
SCAF1-202ENST00000595242 NPM2Q86SE8 214 aaKnown RBP17.16■□□□□ 0.34
SCAF1-202ENST00000595242 SYNE4Q8N205 404 aa17.16■□□□□ 0.34
SCAF1-202ENST00000595242 TEX13AQ9BXU3 409 aaPredicted RBP17.16■□□□□ 0.34
SCAF1-202ENST00000595242 TRAF5O00463 557 aa17.15■□□□□ 0.34
SCAF1-202ENST00000595242 LMOD1P29536 600 aaPredicted RBP17.15■□□□□ 0.34
SCAF1-202ENST00000595242 NBPF5PQ86XG9 351 aaPredicted RBP17.15■□□□□ 0.34
SCAF1-202ENST00000595242 JDP2Q8WYK2 163 aa17.15■□□□□ 0.34
SCAF1-202ENST00000595242 ZNF496Q96IT1 587 aaPredicted RBP17.15■□□□□ 0.34
SCAF1-202ENST00000595242 GJA3Q9Y6H8 435 aa17.15■□□□□ 0.34
SCAF1-202ENST00000595242 MTHFSDQ2M296 383 aaKnown RBP17.14■□□□□ 0.33
SCAF1-202ENST00000595242 MORC1Q86VD1 984 aa17.14■□□□□ 0.33
SCAF1-202ENST00000595242 HEG1Q9ULI3 1381 aa17.14■□□□□ 0.33
SCAF1-202ENST00000595242 KLRG2A4D1S0 409 aaPredicted RBP17.13■□□□□ 0.33
SCAF1-202ENST00000595242 A1BGP04217 495 aa17.13■□□□□ 0.33
SCAF1-202ENST00000595242 EPS15P42566 896 aa17.13■□□□□ 0.33
SCAF1-202ENST00000595242 HMOX1P09601 288 aa17.12■□□□□ 0.33
SCAF1-202ENST00000595242 SCNN1DP51172 638 aa17.12■□□□□ 0.33
SCAF1-202ENST00000595242 BRPF1P55201 1214 aaPredicted RBP17.12■□□□□ 0.33
SCAF1-202ENST00000595242 EIF6P56537 245 aaKnown RBP17.12■□□□□ 0.33
SCAF1-202ENST00000595242 SAPCD2Q86UD0 394 aa17.12■□□□□ 0.33
SCAF1-202ENST00000595242 DZIP3Q86Y13 1208 aaKnown RBP17.12■□□□□ 0.33
SCAF1-202ENST00000595242 COL4A5P29400 1685 aa17.12■□□□□ 0.33
SCAF1-202ENST00000595242 ZNF790Q6PG37 636 aa17.11■□□□□ 0.33
SCAF1-202ENST00000595242 USP50Q70EL3 339 aaPredicted RBP17.11■□□□□ 0.33
SCAF1-202ENST00000595242 PRKRIP1Q9H875 184 aaPredicted RBP17.11■□□□□ 0.33
SCAF1-202ENST00000595242 PANK3Q9H999 370 aa17.11■□□□□ 0.33
SCAF1-202ENST00000595242 AKAP11Q9UKA4 1901 aa17.11■□□□□ 0.33
SCAF1-202ENST00000595242 ALDH1B1P30837 517 aa17.1■□□□□ 0.33
SCAF1-202ENST00000595242 TPTE2Q6XPS3 522 aa17.1■□□□□ 0.33
SCAF1-202ENST00000595242 PSMD1Q99460 953 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms