RNA–Protein interactions for RNA: ENST00000594399.1

USE1-204, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 2

Gene USE1, Length 613 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-204ENST00000594399 TRIM27P14373 513 aa13.8□□□□□ -0.2
USE1-204ENST00000594399 ZNF827Q17R98 1081 aa13.8□□□□□ -0.2
USE1-204ENST00000594399 AKT1S1Q96B36 256 aa13.8□□□□□ -0.2
USE1-204ENST00000594399 SPON1Q9HCB6 807 aa13.8□□□□□ -0.2
USE1-204ENST00000594399 ADCY9O60503 1353 aa13.8□□□□□ -0.2
USE1-204ENST00000594399 ADRA2BP18089 450 aa13.79□□□□□ -0.2
USE1-204ENST00000594399 SSFA2P28290 1259 aa13.79□□□□□ -0.2
USE1-204ENST00000594399 TTLL7Q6ZT98 887 aa13.79□□□□□ -0.2
USE1-204ENST00000594399 DZIP3Q86Y13 1208 aaKnown RBP13.79□□□□□ -0.2
USE1-204ENST00000594399 PHF14O94880 888 aa13.78□□□□□ -0.2
USE1-204ENST00000594399 MS4A1P11836 297 aa13.78□□□□□ -0.2
USE1-204ENST00000594399 KSR2Q6VAB6 950 aa13.78□□□□□ -0.2
USE1-204ENST00000594399 FTSJ3Q8IY81 847 aaKnown RBP13.78□□□□□ -0.2
USE1-204ENST00000594399 PLBD2Q8NHP8 589 aa13.78□□□□□ -0.2
USE1-204ENST00000594399 ABCC4O15439 1325 aa13.78□□□□□ -0.2
USE1-204ENST00000594399 MAP3K15Q6ZN16 1313 aa13.78□□□□□ -0.2
USE1-204ENST00000594399 ANKRD36CQ5JPF3 1778 aa13.78□□□□□ -0.2
USE1-204ENST00000594399 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.77□□□□□ -0.21
USE1-204ENST00000594399 PI4KAP2A4QPH2 592 aa13.77□□□□□ -0.21
USE1-204ENST00000594399 F6X3S4 739 aa13.77□□□□□ -0.21
USE1-204ENST00000594399 ANKRD13DQ6ZTN6 518 aa13.77□□□□□ -0.21
USE1-204ENST00000594399 RIC3Q7Z5B4 369 aa13.77□□□□□ -0.21
USE1-204ENST00000594399 AMIGO3Q86WK7 504 aa13.77□□□□□ -0.21
USE1-204ENST00000594399 DZIP1LQ8IYY4 767 aaKnown RBP13.77□□□□□ -0.21
USE1-204ENST00000594399 PI4KAP1Q8N8J0 262 aa13.77□□□□□ -0.21
USE1-204ENST00000594399 ARXQ96QS3 562 aa13.77□□□□□ -0.21
USE1-204ENST00000594399 ZBTB3Q9H5J0 574 aa13.77□□□□□ -0.21
USE1-204ENST00000594399 TFCP2L1Q9NZI6 479 aa13.77□□□□□ -0.21
USE1-204ENST00000594399 ATP10DQ9P241 1426 aa13.77□□□□□ -0.21
USE1-204ENST00000594399 PPP1R1BQ9UD71 204 aaPredicted RBP13.77□□□□□ -0.21
USE1-204ENST00000594399 TBC1D2BQ9UPU7 963 aa13.77□□□□□ -0.21
USE1-204ENST00000594399 TNNQ9UQP3 1299 aa13.77□□□□□ -0.21
USE1-204ENST00000594399 MAP3K2Q9Y2U5 619 aa13.77□□□□□ -0.21
USE1-204ENST00000594399 PDE3AQ14432 1141 aa13.76□□□□□ -0.21
USE1-204ENST00000594399 TRAPPC3LQ5T215 181 aa13.76□□□□□ -0.21
USE1-204ENST00000594399 FLAD1Q8NFF5 587 aa13.76□□□□□ -0.21
USE1-204ENST00000594399 DNAAF4Q8WXU2 420 aa13.76□□□□□ -0.21
USE1-204ENST00000594399 CLUAP1Q96AJ1 413 aa13.76□□□□□ -0.21
USE1-204ENST00000594399 USP42Q9H9J4 1324 aaKnown RBP13.75□□□□□ -0.21
USE1-204ENST00000594399 ERVV-1B6SEH8 477 aa13.75□□□□□ -0.21
USE1-204ENST00000594399 CAMTA2O94983 1202 aa13.75□□□□□ -0.21
USE1-204ENST00000594399 RFC4P35249 363 aa13.75□□□□□ -0.21
USE1-204ENST00000594399 SMIM5Q71RC9 77 aa13.75□□□□□ -0.21
USE1-204ENST00000594399 ARHGEF1Q92888 912 aaKnown RBP13.75□□□□□ -0.21
USE1-204ENST00000594399 NARFQ9UHQ1 456 aa13.75□□□□□ -0.21
USE1-204ENST00000594399 NUP98P52948 1817 aa13.74□□□□□ -0.21
USE1-204ENST00000594399 AFDNP55196 1824 aaKnown RBP13.74□□□□□ -0.21
USE1-204ENST00000594399 PNPLA7Q6ZV29 1317 aa13.74□□□□□ -0.21
USE1-204ENST00000594399 RGL2O15211 777 aa13.74□□□□□ -0.21
USE1-204ENST00000594399 ZPR1O75312 459 aa13.74□□□□□ -0.21
USE1-204ENST00000594399 RLBP1P12271 317 aa13.74□□□□□ -0.21
USE1-204ENST00000594399 CCT4P50991 539 aaKnown RBP13.74□□□□□ -0.21
USE1-204ENST00000594399 NEXNQ0ZGT2 675 aa13.74□□□□□ -0.21
USE1-204ENST00000594399 HSP90AB3PQ58FF7 597 aa13.74□□□□□ -0.21
USE1-204ENST00000594399 C20orf194Q5TEA3 1177 aa13.74□□□□□ -0.21
USE1-204ENST00000594399 SLC4A10Q6U841 1118 aa13.74□□□□□ -0.21
USE1-204ENST00000594399 GIGYF2Q6Y7W6 1299 aaKnown RBP13.74□□□□□ -0.21
USE1-204ENST00000594399 PANK1Q8TE04 598 aa13.74□□□□□ -0.21
USE1-204ENST00000594399 METTL22Q9BUU2 404 aaPredicted RBP13.74□□□□□ -0.21
USE1-204ENST00000594399 ZNF652Q9Y2D9 606 aa13.74□□□□□ -0.21
USE1-204ENST00000594399 CASZ1Q86V15 1759 aa13.73□□□□□ -0.21
USE1-204ENST00000594399 ZBTB7AO95365 584 aa13.73□□□□□ -0.21
USE1-204ENST00000594399 USPL1Q5W0Q7 1092 aa13.73□□□□□ -0.21
USE1-204ENST00000594399 TMEM57Q8N5G2 664 aa13.73□□□□□ -0.21
USE1-204ENST00000594399 MYD88Q99836 296 aa13.73□□□□□ -0.21
USE1-204ENST00000594399 PDGFDQ9GZP0 370 aaPredicted RBP13.73□□□□□ -0.21
USE1-204ENST00000594399 MTFR1LQ9H019 292 aa13.73□□□□□ -0.21
USE1-204ENST00000594399 SRP68Q9UHB9 627 aaKnown RBP13.73□□□□□ -0.21
USE1-204ENST00000594399 NEFLP07196 543 aa13.72□□□□□ -0.21
USE1-204ENST00000594399 HLFQ16534 295 aa13.72□□□□□ -0.21
USE1-204ENST00000594399 BEND3Q5T5X7 828 aa13.72□□□□□ -0.21
USE1-204ENST00000594399 INTS3Q68E01 1043 aaKnown RBP13.72□□□□□ -0.21
USE1-204ENST00000594399 CLEC4GQ6UXB4 293 aa13.72□□□□□ -0.21
USE1-204ENST00000594399 ITPRIPQ8IWB1 547 aa13.72□□□□□ -0.21
USE1-204ENST00000594399 SRCIN1Q9C0H9 1055 aa13.72□□□□□ -0.21
USE1-204ENST00000594399 COL24A1Q17RW2 1714 aa13.72□□□□□ -0.21
USE1-204ENST00000594399 IBTKQ9P2D0 1353 aaPredicted RBP13.71□□□□□ -0.21
USE1-204ENST00000594399 MSH5O43196 834 aa13.71□□□□□ -0.21
USE1-204ENST00000594399 TCIRG1Q13488 830 aa13.71□□□□□ -0.21
USE1-204ENST00000594399 MVPQ14764 893 aaKnown RBP13.71□□□□□ -0.21
USE1-204ENST00000594399 COL23A1Q86Y22 540 aaPredicted RBP13.71□□□□□ -0.21
USE1-204ENST00000594399 LINS1Q8NG48 757 aa13.71□□□□□ -0.21
USE1-204ENST00000594399 ATF5Q9Y2D1 282 aaPredicted RBP13.71□□□□□ -0.21
USE1-204ENST00000594399 NEURL1BA8MQ27 555 aa13.7□□□□□ -0.22
USE1-204ENST00000594399 ALDH1L1O75891 902 aa13.7□□□□□ -0.22
USE1-204ENST00000594399 IGKV5-2P06315 115 aa13.7□□□□□ -0.22
USE1-204ENST00000594399 IRX6P78412 446 aaPredicted RBP13.7□□□□□ -0.22
USE1-204ENST00000594399 SLC16A10Q8TF71 515 aa13.7□□□□□ -0.22
USE1-204ENST00000594399 BCL2L12Q9HB09 334 aa13.7□□□□□ -0.22
USE1-204ENST00000594399 DDX19BQ9UMR2 479 aa13.7□□□□□ -0.22
USE1-204ENST00000594399 COG6Q9Y2V7 657 aa13.7□□□□□ -0.22
USE1-204ENST00000594399 ATP5J2-PTCD1G3V325 749 aa13.69□□□□□ -0.22
USE1-204ENST00000594399 GYS1P13807 737 aa13.69□□□□□ -0.22
USE1-204ENST00000594399 CWF19L2Q2TBE0 894 aaKnown RBP13.69□□□□□ -0.22
USE1-204ENST00000594399 CRBNQ96SW2 442 aa13.69□□□□□ -0.22
USE1-204ENST00000594399 ISCA1Q9BUE6 129 aa13.69□□□□□ -0.22
USE1-204ENST00000594399 UBN2Q6ZU65 1347 aa13.68□□□□□ -0.22
USE1-204ENST00000594399 GPTP24298 496 aa13.68□□□□□ -0.22
USE1-204ENST00000594399 PTGER2P43116 358 aa13.68□□□□□ -0.22
USE1-204ENST00000594399 TRIM28Q13263 835 aaKnown RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms