RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 TRERF1Q96PN7 1200 aa9.04□□□□□ -0.96
SMAD4-216ENST00000593223 QTRT2Q9H974 415 aaKnown RBP9.04□□□□□ -0.96
SMAD4-216ENST00000593223 SCNN1AP37088 669 aa9.03□□□□□ -0.96
SMAD4-216ENST00000593223 DGKZQ13574 1117 aa9.03□□□□□ -0.96
SMAD4-216ENST00000593223 LCE2CQ5TA81 110 aa9.03□□□□□ -0.96
SMAD4-216ENST00000593223 C16orf46Q6P387 395 aa9.03□□□□□ -0.96
SMAD4-216ENST00000593223 NANOS1Q8WY41 292 aaKnown RBP9.03□□□□□ -0.96
SMAD4-216ENST00000593223 HSH2DQ96JZ2 352 aa9.03□□□□□ -0.96
SMAD4-216ENST00000593223 KLK14Q9P0G3 267 aa9.03□□□□□ -0.96
SMAD4-216ENST00000593223 STK17AQ9UEE5 414 aa9.03□□□□□ -0.96
SMAD4-216ENST00000593223 SEPT3Q9UH03 358 aa9.03□□□□□ -0.96
SMAD4-216ENST00000593223 GPR25O00155 361 aa9.02□□□□□ -0.97
SMAD4-216ENST00000593223 PHLDB3Q6NSJ2 640 aa9.02□□□□□ -0.97
SMAD4-216ENST00000593223 SUSD3Q96L08 255 aa9.02□□□□□ -0.97
SMAD4-216ENST00000593223 ATXN7O15265 892 aaPredicted RBP9.01□□□□□ -0.97
SMAD4-216ENST00000593223 C11orf91Q3C1V1 193 aa9.01□□□□□ -0.97
SMAD4-216ENST00000593223 COX20Q5RI15 118 aa9.01□□□□□ -0.97
SMAD4-216ENST00000593223 ZNF280CQ8ND82 737 aa9.01□□□□□ -0.97
SMAD4-216ENST00000593223 MYO19Q96H55 970 aa9.01□□□□□ -0.97
SMAD4-216ENST00000593223 ZCCHC2Q9C0B9 1178 aaKnown RBP9.01□□□□□ -0.97
SMAD4-216ENST00000593223 PHF24Q9UPV7 400 aa9.01□□□□□ -0.97
SMAD4-216ENST00000593223 PCDHGC4Q9Y5F7 938 aa9.01□□□□□ -0.97
SMAD4-216ENST00000593223 WIPF1O43516 503 aa9□□□□□ -0.97
SMAD4-216ENST00000593223 THBS1P07996 1170 aa9□□□□□ -0.97
SMAD4-216ENST00000593223 ARID4AP29374 1257 aaPredicted RBP9□□□□□ -0.97
SMAD4-216ENST00000593223 HOMEZQ8IX15 550 aa9□□□□□ -0.97
SMAD4-216ENST00000593223 C7orf43Q8WVR3 580 aa9□□□□□ -0.97
SMAD4-216ENST00000593223 KLRG1Q96E93 195 aa9□□□□□ -0.97
SMAD4-216ENST00000593223 TRAIPQ9BWF2 469 aa9□□□□□ -0.97
SMAD4-216ENST00000593223 SAP130Q9H0E3 1048 aa9□□□□□ -0.97
SMAD4-216ENST00000593223 ERBB4Q15303 1308 aa9□□□□□ -0.97
SMAD4-216ENST00000593223 DCDC2BA2VCK2 349 aa8.99□□□□□ -0.97
SMAD4-216ENST00000593223 KHNYNO15037 678 aaKnown RBP8.99□□□□□ -0.97
SMAD4-216ENST00000593223 BRD1O95696 1058 aa8.99□□□□□ -0.97
SMAD4-216ENST00000593223 ABL1P00519 1130 aa8.99□□□□□ -0.97
SMAD4-216ENST00000593223 CEP63Q96MT8 703 aa8.99□□□□□ -0.97
SMAD4-216ENST00000593223 LRFN2Q9ULH4 789 aa8.99□□□□□ -0.97
SMAD4-216ENST00000593223 VSIG8P0DPA2 414 aa8.98□□□□□ -0.97
SMAD4-216ENST00000593223 BRD2P25440 801 aaKnown RBP8.98□□□□□ -0.97
SMAD4-216ENST00000593223 GPR161Q8N6U8 529 aaKnown RBP8.98□□□□□ -0.97
SMAD4-216ENST00000593223 GTF3C2Q8WUA4 911 aaPredicted RBP8.98□□□□□ -0.97
SMAD4-216ENST00000593223 IFT43Q96FT9 208 aa8.98□□□□□ -0.97
SMAD4-216ENST00000593223 ABHD17AQ96GS6 310 aa8.98□□□□□ -0.97
SMAD4-216ENST00000593223 TGFBR3LH3BV60 316 aa8.97□□□□□ -0.97
SMAD4-216ENST00000593223 BNIP3LO60238 219 aa8.97□□□□□ -0.97
SMAD4-216ENST00000593223 ATXN7L1Q9ULK2 861 aaPredicted RBP8.97□□□□□ -0.97
SMAD4-216ENST00000593223 UBAP2LQ14157 1087 aaKnown RBP8.96□□□□□ -0.98
SMAD4-216ENST00000593223 SAMD5Q5TGI4 173 aa8.96□□□□□ -0.98
SMAD4-216ENST00000593223 BTLAQ7Z6A9 289 aa8.96□□□□□ -0.98
SMAD4-216ENST00000593223 CCER1Q8TC90 406 aaPredicted RBP8.96□□□□□ -0.98
SMAD4-216ENST00000593223 CFHR5Q9BXR6 569 aa8.96□□□□□ -0.98
SMAD4-216ENST00000593223 COL25A1Q9BXS0 654 aaPredicted RBP8.96□□□□□ -0.98
SMAD4-216ENST00000593223 FAM157BP0CG42 384 aa8.95□□□□□ -0.98
SMAD4-216ENST00000593223 MAPTP10636 758 aaKnown RBP8.95□□□□□ -0.98
SMAD4-216ENST00000593223 IER5Q5VY09 327 aa8.95□□□□□ -0.98
SMAD4-216ENST00000593223 AEBP1Q8IUX7 1158 aa8.95□□□□□ -0.98
SMAD4-216ENST00000593223 HELQQ8TDG4 1101 aa8.95□□□□□ -0.98
SMAD4-216ENST00000593223 BRD7Q9NPI1 651 aa8.95□□□□□ -0.98
SMAD4-216ENST00000593223 ANO2Q9NQ90 1003 aa8.95□□□□□ -0.98
SMAD4-216ENST00000593223 STIM2Q9P246 746 aa8.95□□□□□ -0.98
SMAD4-216ENST00000593223 BCS1LQ9Y276 419 aa8.95□□□□□ -0.98
SMAD4-216ENST00000593223 MICAL2O94851 1124 aa8.94□□□□□ -0.98
SMAD4-216ENST00000593223 MX2P20592 715 aa8.94□□□□□ -0.98
SMAD4-216ENST00000593223 FGFR3P22607 806 aa8.94□□□□□ -0.98
SMAD4-216ENST00000593223 GMPRP36959 345 aa8.94□□□□□ -0.98
SMAD4-216ENST00000593223 TNP2Q05952 138 aa8.94□□□□□ -0.98
SMAD4-216ENST00000593223 TREML1Q86YW5 311 aa8.94□□□□□ -0.98
SMAD4-216ENST00000593223 CNTNAP3BQ96NU0 1288 aa8.94□□□□□ -0.98
SMAD4-216ENST00000593223 CNTNAP3Q9BZ76 1288 aa8.94□□□□□ -0.98
SMAD4-216ENST00000593223 DNMT3AQ9Y6K1 912 aaPredicted RBP8.94□□□□□ -0.98
SMAD4-216ENST00000593223 TNFRSF10BO14763 440 aa8.93□□□□□ -0.98
SMAD4-216ENST00000593223 SERPINB4P48594 390 aa8.93□□□□□ -0.98
SMAD4-216ENST00000593223 IDH3AP50213 366 aa8.93□□□□□ -0.98
SMAD4-216ENST00000593223 INSM1Q01101 510 aaPredicted RBP8.93□□□□□ -0.98
SMAD4-216ENST00000593223 TYRO3Q06418 890 aa8.93□□□□□ -0.98
SMAD4-216ENST00000593223 ZNF211Q13398 564 aaPredicted RBP8.93□□□□□ -0.98
SMAD4-216ENST00000593223 MTMR3Q13615 1198 aa8.93□□□□□ -0.98
SMAD4-216ENST00000593223 ABTB2Q8N961 1025 aa8.93□□□□□ -0.98
SMAD4-216ENST00000593223 NDFIP2Q9NV92 336 aa8.93□□□□□ -0.98
SMAD4-216ENST00000593223 NSFL1CQ9UNZ2 370 aaKnown RBP8.93□□□□□ -0.98
SMAD4-216ENST00000593223 EPB42P16452 691 aa8.92□□□□□ -0.98
SMAD4-216ENST00000593223 CD33P20138 364 aa8.92□□□□□ -0.98
SMAD4-216ENST00000593223 KCNA1Q09470 495 aa8.92□□□□□ -0.98
SMAD4-216ENST00000593223 TXNDC2Q86VQ3 553 aa8.92□□□□□ -0.98
SMAD4-216ENST00000593223 ETFBKMTQ8IXQ9 262 aa8.92□□□□□ -0.98
SMAD4-216ENST00000593223 MBIPQ9NS73 344 aa8.92□□□□□ -0.98
SMAD4-216ENST00000593223 MARK1Q9P0L2 795 aa8.92□□□□□ -0.98
SMAD4-216ENST00000593223 LOC100996750A0A140TA64 210 aa8.91□□□□□ -0.98
SMAD4-216ENST00000593223 BMP4P12644 408 aa8.91□□□□□ -0.98
SMAD4-216ENST00000593223 ARSDP51689 593 aa8.91□□□□□ -0.98
SMAD4-216ENST00000593223 FKBP4Q02790 459 aaKnown RBP eCLIP8.91□□□□□ -0.98
SMAD4-216ENST00000593223 SFSWAPQ12872 951 aaKnown RBP8.91□□□□□ -0.98
SMAD4-216ENST00000593223 SF3B2Q13435 895 aaKnown RBP8.91□□□□□ -0.98
SMAD4-216ENST00000593223 AAMPQ13685 434 aa8.91□□□□□ -0.98
SMAD4-216ENST00000593223 LAMC2Q13753 1193 aa8.91□□□□□ -0.98
SMAD4-216ENST00000593223 GAS6Q14393 721 aa8.91□□□□□ -0.98
SMAD4-216ENST00000593223 RNFT1Q5M7Z0 435 aa8.91□□□□□ -0.98
SMAD4-216ENST00000593223 KRTAP4-6Q9BYQ5 205 aa8.91□□□□□ -0.98
SMAD4-216ENST00000593223 DMGDHQ9UI17 866 aaKnown RBP8.91□□□□□ -0.98
SMAD4-216ENST00000593223 KCNH4Q9UQ05 1017 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms