RNA–Protein interactions for RNA: ENST00000592412.5

CIRBP-238, Transcript of cold inducible RNA binding protein, human

TSL 4

Gene CIRBP, Length 532 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CIRBP-238	ENST00000592412	ERFE	Q4G0M1	354 aa		24.57	■■□□□ 1.52
CIRBP-238	ENST00000592412	DZIP3	Q86Y13	1208 aa	Known RBP	24.57	■■□□□ 1.52
CIRBP-238	ENST00000592412	PRPF40B	Q6NWY9	871 aa	Known RBP	24.56	■■□□□ 1.52
CIRBP-238	ENST00000592412	STYK1	Q6J9G0	422 aa		24.55	■■□□□ 1.52
CIRBP-238	ENST00000592412	DPY19L2	Q6NUT2	758 aa		24.55	■■□□□ 1.52
CIRBP-238	ENST00000592412	TAOK3	Q9H2K8	898 aa		24.55	■■□□□ 1.52
CIRBP-238	ENST00000592412	POTEI	P0CG38	1075 aa		24.54	■■□□□ 1.52
CIRBP-238	ENST00000592412	POTEJ	P0CG39	1038 aa		24.54	■■□□□ 1.52
CIRBP-238	ENST00000592412	ST5	P78524	1137 aa		24.53	■■□□□ 1.52
CIRBP-238	ENST00000592412	C7orf43	Q8WVR3	580 aa		24.53	■■□□□ 1.52
CIRBP-238	ENST00000592412	CNKSR1	Q969H4	720 aa		24.53	■■□□□ 1.52
CIRBP-238	ENST00000592412	DDN	O94850	711 aa	Predicted RBP	24.52	■■□□□ 1.52
CIRBP-238	ENST00000592412	MCM10	Q7L590	875 aa		24.52	■■□□□ 1.52
CIRBP-238	ENST00000592412	MASTL	Q96GX5	879 aa		24.52	■■□□□ 1.52
CIRBP-238	ENST00000592412	HSPA1A	P0DMV8	641 aa	Known RBP	24.51	■■□□□ 1.51
CIRBP-238	ENST00000592412	HSPA1B	P0DMV9	641 aa	Known RBP	24.51	■■□□□ 1.51
CIRBP-238	ENST00000592412	NBPF26	B4DH59	902 aa		24.5	■■□□□ 1.51
CIRBP-238	ENST00000592412	NBPF10	Q6P3W6	841 aa	Known RBP	24.5	■■□□□ 1.51
CIRBP-238	ENST00000592412	CLEC4G	Q6UXB4	293 aa		24.5	■■□□□ 1.51
CIRBP-238	ENST00000592412	NPM2	Q86SE8	214 aa	Known RBP	24.5	■■□□□ 1.51
CIRBP-238	ENST00000592412	NBPF15	Q8N660	670 aa		24.5	■■□□□ 1.51
CIRBP-238	ENST00000592412	KLRG2	A4D1S0	409 aa	Predicted RBP	24.49	■■□□□ 1.51
CIRBP-238	ENST00000592412	NPHP1	O15259	732 aa		24.48	■■□□□ 1.51
CIRBP-238	ENST00000592412	SNRPA1	P09661	255 aa	Known RBP	24.48	■■□□□ 1.51
CIRBP-238	ENST00000592412	DCTN1	Q14203	1278 aa		24.48	■■□□□ 1.51
CIRBP-238	ENST00000592412	CHADL	Q6NUI6	762 aa		24.48	■■□□□ 1.51
CIRBP-238	ENST00000592412	NBPF5P	Q86XG9	351 aa	Predicted RBP	24.48	■■□□□ 1.51
CIRBP-238	ENST00000592412	CFAP53	Q96M91	514 aa		24.48	■■□□□ 1.51
CIRBP-238	ENST00000592412	TNS4	Q8IZW8	715 aa		24.47	■■□□□ 1.51
CIRBP-238	ENST00000592412	PPP2R1A	P30153	589 aa		24.46	■■□□□ 1.51
CIRBP-238	ENST00000592412	SOGA3	Q5TF21	947 aa		24.46	■■□□□ 1.51
CIRBP-238	ENST00000592412	OLFM4	Q6UX06	510 aa		24.46	■■□□□ 1.51
CIRBP-238	ENST00000592412	U2AF1L5	P0DN76	240 aa	Predicted RBP	24.45	■■□□□ 1.5
CIRBP-238	ENST00000592412	U2AF1	Q01081	240 aa	Known RBP eCLIP	24.45	■■□□□ 1.5
CIRBP-238	ENST00000592412	CAPN15	O75808	1086 aa		24.44	■■□□□ 1.5
CIRBP-238	ENST00000592412	NPR1	P16066	1061 aa		24.44	■■□□□ 1.5
CIRBP-238	ENST00000592412	CCDC93	Q567U6	631 aa		24.44	■■□□□ 1.5
CIRBP-238	ENST00000592412	L3MBTL3	Q96JM7	780 aa	Predicted RBP	24.44	■■□□□ 1.5
CIRBP-238	ENST00000592412	CREBZF	Q9NS37	354 aa		24.44	■■□□□ 1.5
CIRBP-238	ENST00000592412	ZNF652	Q9Y2D9	606 aa		24.44	■■□□□ 1.5
CIRBP-238	ENST00000592412	HLF	Q16534	295 aa		24.43	■■□□□ 1.5
CIRBP-238	ENST00000592412	RTF1	Q92541	710 aa	Known RBP	24.43	■■□□□ 1.5
CIRBP-238	ENST00000592412	NIP7	Q9Y221	180 aa	Known RBP eCLIP	24.43	■■□□□ 1.5
CIRBP-238	ENST00000592412	NUDC	Q9Y266	331 aa		24.43	■■□□□ 1.5
CIRBP-238	ENST00000592412	SCN4A	P35499	1836 aa		24.42	■■□□□ 1.5
CIRBP-238	ENST00000592412	LAMB4	A4D0S4	1761 aa		24.42	■■□□□ 1.5
CIRBP-238	ENST00000592412	PASK	Q96RG2	1323 aa		24.42	■■□□□ 1.5
CIRBP-238	ENST00000592412	ZNF541	Q9H0D2	1346 aa		24.42	■■□□□ 1.5
CIRBP-238	ENST00000592412	RGL2	O15211	777 aa		24.42	■■□□□ 1.5
CIRBP-238	ENST00000592412	SNED1	Q8TER0	1413 aa		24.42	■■□□□ 1.5
CIRBP-238	ENST00000592412	FKBP4	Q02790	459 aa	Known RBP eCLIP	24.41	■■□□□ 1.5
CIRBP-238	ENST00000592412	TAF1D	Q9H5J8	278 aa	Predicted RBP	24.41	■■□□□ 1.5
CIRBP-238	ENST00000592412	ZNF277	Q9NRM2	450 aa	Predicted RBP	24.41	■■□□□ 1.5
CIRBP-238	ENST00000592412	MKRN1	Q9UHC7	482 aa	Known RBP	24.41	■■□□□ 1.5
CIRBP-238	ENST00000592412	ADAMTSL1	Q8N6G6	1762 aa		24.4	■■□□□ 1.5
CIRBP-238	ENST00000592412	FAM177B	A6PVY3	158 aa		24.4	■■□□□ 1.5
CIRBP-238	ENST00000592412	HTATSF1	O43719	755 aa	Known RBP	24.4	■■□□□ 1.5
CIRBP-238	ENST00000592412	TPTE2	Q6XPS3	522 aa		24.4	■■□□□ 1.5
CIRBP-238	ENST00000592412	MIS18A	Q9NYP9	233 aa		24.4	■■□□□ 1.5
CIRBP-238	ENST00000592412	IQCA1L	A6NCM1	817 aa		24.38	■■□□□ 1.49
CIRBP-238	ENST00000592412	TAF7	Q15545	349 aa	Predicted RBP	24.38	■■□□□ 1.49
CIRBP-238	ENST00000592412	LDHD	Q86WU2	507 aa		24.38	■■□□□ 1.49
CIRBP-238	ENST00000592412	KDM3B	Q7LBC6	1761 aa		24.38	■■□□□ 1.49
CIRBP-238	ENST00000592412	ABCC12	Q96J65	1359 aa		24.38	■■□□□ 1.49
CIRBP-238	ENST00000592412	CNTNAP1	P78357	1384 aa		24.37	■■□□□ 1.49
CIRBP-238	ENST00000592412	ITGBL1	O95965	494 aa	Predicted RBP	24.36	■■□□□ 1.49
CIRBP-238	ENST00000592412	DLG5	Q8TDM6	1919 aa		24.35	■■□□□ 1.49
CIRBP-238	ENST00000592412	COL4A5	P29400	1685 aa		24.35	■■□□□ 1.49
CIRBP-238	ENST00000592412	CRY2	Q49AN0	593 aa		24.35	■■□□□ 1.49
CIRBP-238	ENST00000592412	FZD9	O00144	591 aa		24.34	■■□□□ 1.49
CIRBP-238	ENST00000592412	RTKN2	Q8IZC4	609 aa		24.34	■■□□□ 1.49
CIRBP-238	ENST00000592412	NUP98	P52948	1817 aa		24.33	■■□□□ 1.49
CIRBP-238	ENST00000592412	IARS	P41252	1262 aa	Known RBP	24.33	■■□□□ 1.49
CIRBP-238	ENST00000592412	SLC51A	Q86UW1	340 aa		24.33	■■□□□ 1.49
CIRBP-238	ENST00000592412	ALDH1B1	P30837	517 aa		24.32	■■□□□ 1.48
CIRBP-238	ENST00000592412	NUTM1	Q86Y26	1132 aa		24.32	■■□□□ 1.48
CIRBP-238	ENST00000592412	SYNE4	Q8N205	404 aa		24.32	■■□□□ 1.48
CIRBP-238	ENST00000592412	HACL1	Q9UJ83	578 aa		24.32	■■□□□ 1.48
CIRBP-238	ENST00000592412	RNF123	Q5XPI4	1314 aa		24.32	■■□□□ 1.48
CIRBP-238	ENST00000592412	FOXN1	O15353	648 aa		24.31	■■□□□ 1.48
CIRBP-238	ENST00000592412	EAPP	Q56P03	285 aa	Predicted RBP	24.31	■■□□□ 1.48
CIRBP-238	ENST00000592412	TTLL7	Q6ZT98	887 aa		24.31	■■□□□ 1.48
CIRBP-238	ENST00000592412	NGEF	Q8N5V2	710 aa		24.31	■■□□□ 1.48
CIRBP-238	ENST00000592412	UBN2	Q6ZU65	1347 aa		24.31	■■□□□ 1.48
CIRBP-238	ENST00000592412	ERVV-1	B6SEH8	477 aa		24.3	■■□□□ 1.48
CIRBP-238	ENST00000592412	EPHX2	P34913	555 aa		24.3	■■□□□ 1.48
CIRBP-238	ENST00000592412	EIF4A1	P60842	406 aa	Known RBP	24.3	■■□□□ 1.48
CIRBP-238	ENST00000592412	PLEKHF1	Q96S99	279 aa		24.3	■■□□□ 1.48
CIRBP-238	ENST00000592412	MAP3K15	Q6ZN16	1313 aa		24.3	■■□□□ 1.48
CIRBP-238	ENST00000592412	LTBP1	Q14766	1721 aa		24.3	■■□□□ 1.48
CIRBP-238	ENST00000592412	RIC1	Q4ADV7	1423 aa		24.29	■■□□□ 1.48
CIRBP-238	ENST00000592412	VEGFB	P49765	207 aa		24.29	■■□□□ 1.48
CIRBP-238	ENST00000592412	PSMD1	Q99460	953 aa		24.29	■■□□□ 1.48
CIRBP-238	ENST00000592412	THUMPD2	Q9BTF0	503 aa	Known RBP	24.29	■■□□□ 1.48
CIRBP-238	ENST00000592412	TMEM88B	A6NKF7	163 aa		24.28	■■□□□ 1.48
CIRBP-238	ENST00000592412	GTF2E1	P29083	439 aa	Predicted RBP	24.28	■■□□□ 1.48
CIRBP-238	ENST00000592412	GPC2	Q8N158	579 aa		24.27	■■□□□ 1.48
CIRBP-238	ENST00000592412	NYX	Q9GZU5	481 aa		24.27	■■□□□ 1.48
CIRBP-238	ENST00000592412	RRP7A	Q9Y3A4	280 aa	Known RBP	24.27	■■□□□ 1.48
CIRBP-238	ENST00000592412	IBTK	Q9P2D0	1353 aa	Predicted RBP	24.27	■■□□□ 1.48

Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms