RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 ATP10DQ9P241 1426 aa14.32□□□□□ -0.12
LIG3-214ENST00000592244 EIF2S2P20042 333 aaKnown RBP14.31□□□□□ -0.12
LIG3-214ENST00000592244 CNKSR1Q969H4 720 aa14.31□□□□□ -0.12
LIG3-214ENST00000592244 CHMP4AQ9BY43 222 aa14.31□□□□□ -0.12
LIG3-214ENST00000592244 MAP3K15Q6ZN16 1313 aa14.31□□□□□ -0.12
LIG3-214ENST00000592244 CHL1O00533 1208 aa14.3□□□□□ -0.12
LIG3-214ENST00000592244 CFAP44Q96MT7 982 aa14.3□□□□□ -0.12
LIG3-214ENST00000592244 TRIM35Q9UPQ4 493 aa14.3□□□□□ -0.12
LIG3-214ENST00000592244 SCN7AQ01118 1682 aa14.3□□□□□ -0.12
LIG3-214ENST00000592244 APAF1O14727 1248 aa14.29□□□□□ -0.12
LIG3-214ENST00000592244 HOXB7P09629 217 aa14.29□□□□□ -0.12
LIG3-214ENST00000592244 SOGA3Q5TF21 947 aa14.29□□□□□ -0.12
LIG3-214ENST00000592244 STYK1Q6J9G0 422 aa14.29□□□□□ -0.12
LIG3-214ENST00000592244 MASTLQ96GX5 879 aa14.29□□□□□ -0.12
LIG3-214ENST00000592244 ADCY9O60503 1353 aa14.29□□□□□ -0.12
LIG3-214ENST00000592244 N4BP2Q86UW6 1770 aaPredicted RBP14.29□□□□□ -0.12
LIG3-214ENST00000592244 C1QTNF8P60827 252 aa14.28□□□□□ -0.12
LIG3-214ENST00000592244 C9orf131Q5VYM1 1079 aa14.28□□□□□ -0.12
LIG3-214ENST00000592244 DLG5Q8TDM6 1919 aa14.28□□□□□ -0.12
LIG3-214ENST00000592244 ZNF526Q8TF50 670 aaPredicted RBP14.28□□□□□ -0.12
LIG3-214ENST00000592244 KDM3BQ7LBC6 1761 aa14.27□□□□□ -0.12
LIG3-214ENST00000592244 NRXN2Q9P2S2 1712 aa14.27□□□□□ -0.12
LIG3-214ENST00000592244 NPR1P16066 1061 aa14.27□□□□□ -0.13
LIG3-214ENST00000592244 GNAI1P63096 354 aa14.27□□□□□ -0.13
LIG3-214ENST00000592244 HLFQ16534 295 aa14.27□□□□□ -0.13
LIG3-214ENST00000592244 HSP90AB3PQ58FF7 597 aa14.27□□□□□ -0.13
LIG3-214ENST00000592244 ZBTB3Q9H5J0 574 aa14.27□□□□□ -0.13
LIG3-214ENST00000592244 MRS2Q9HD23 443 aa14.27□□□□□ -0.13
LIG3-214ENST00000592244 IFT57Q9NWB7 429 aa14.27□□□□□ -0.13
LIG3-214ENST00000592244 RNF181Q9P0P0 153 aa14.27□□□□□ -0.13
LIG3-214ENST00000592244 ZC3H4Q9UPT8 1303 aaKnown RBP14.26□□□□□ -0.13
LIG3-214ENST00000592244 FAM177BA6PVY3 158 aa14.26□□□□□ -0.13
LIG3-214ENST00000592244 SRGNP10124 158 aa14.26□□□□□ -0.13
LIG3-214ENST00000592244 LMNB1P20700 586 aa14.26□□□□□ -0.13
LIG3-214ENST00000592244 PARP10Q53GL7 1025 aa14.26□□□□□ -0.13
LIG3-214ENST00000592244 HDGFL1Q5TGJ6 251 aa14.26□□□□□ -0.13
LIG3-214ENST00000592244 GIGYF2Q6Y7W6 1299 aaKnown RBP14.26□□□□□ -0.13
LIG3-214ENST00000592244 TTLL7Q6ZT98 887 aa14.26□□□□□ -0.13
LIG3-214ENST00000592244 PPP1R42Q7Z4L9 355 aa14.26□□□□□ -0.13
LIG3-214ENST00000592244 CCDC24Q8N4L8 307 aa14.26□□□□□ -0.13
LIG3-214ENST00000592244 DDX21Q9NR30 783 aaKnown RBP eCLIP14.26□□□□□ -0.13
LIG3-214ENST00000592244 KIAA1551Q9HCM1 1747 aa14.26□□□□□ -0.13
LIG3-214ENST00000592244 LAMB4A4D0S4 1761 aa14.25□□□□□ -0.13
LIG3-214ENST00000592244 KDM2BQ8NHM5 1336 aa14.25□□□□□ -0.13
LIG3-214ENST00000592244 DBF4Q9UBU7 674 aaPredicted RBP14.25□□□□□ -0.13
LIG3-214ENST00000592244 ALDH1B1P30837 517 aa14.24□□□□□ -0.13
LIG3-214ENST00000592244 NECTIN2Q92692 538 aa14.24□□□□□ -0.13
LIG3-214ENST00000592244 AFDNP55196 1824 aaKnown RBP14.24□□□□□ -0.13
LIG3-214ENST00000592244 IBTKQ9P2D0 1353 aaPredicted RBP14.23□□□□□ -0.13
LIG3-214ENST00000592244 KLRG2A4D1S0 409 aaPredicted RBP14.23□□□□□ -0.13
LIG3-214ENST00000592244 C21orf2O43822 256 aa14.23□□□□□ -0.13
LIG3-214ENST00000592244 GPTP24298 496 aa14.23□□□□□ -0.13
LIG3-214ENST00000592244 AIMP1Q12904 312 aaKnown RBP14.23□□□□□ -0.13
LIG3-214ENST00000592244 PDIA6Q15084 440 aa14.23□□□□□ -0.13
LIG3-214ENST00000592244 PRPF40BQ6NWY9 871 aaKnown RBP14.23□□□□□ -0.13
LIG3-214ENST00000592244 COPS6Q7L5N1 327 aa14.23□□□□□ -0.13
LIG3-214ENST00000592244 C16orf71Q8IYS4 520 aaPredicted RBP14.23□□□□□ -0.13
LIG3-214ENST00000592244 MBIPQ9NS73 344 aa14.23□□□□□ -0.13
LIG3-214ENST00000592244 HYPKQ9NX55 129 aa14.23□□□□□ -0.13
LIG3-214ENST00000592244 BCORQ6W2J9 1755 aa14.23□□□□□ -0.13
LIG3-214ENST00000592244 RNF123Q5XPI4 1314 aa14.22□□□□□ -0.13
LIG3-214ENST00000592244 CCDC27Q2M243 656 aa14.22□□□□□ -0.13
LIG3-214ENST00000592244 NCBP3Q53F19 620 aaKnown RBP14.22□□□□□ -0.13
LIG3-214ENST00000592244 DUSP27Q5VZP5 1158 aa14.22□□□□□ -0.13
LIG3-214ENST00000592244 ZNF34Q8IZ26 560 aa14.22□□□□□ -0.13
LIG3-214ENST00000592244 XAGE3Q8WTP9 111 aa14.22□□□□□ -0.13
LIG3-214ENST00000592244 RPGRQ92834 1020 aaKnown RBP14.22□□□□□ -0.13
LIG3-214ENST00000592244 UTP14AQ9BVJ6 771 aaKnown RBP14.22□□□□□ -0.13
LIG3-214ENST00000592244 TMX4Q9H1E5 349 aaPredicted RBP14.22□□□□□ -0.13
LIG3-214ENST00000592244 ZNF219Q9P2Y4 722 aaPredicted RBP14.22□□□□□ -0.13
LIG3-214ENST00000592244 ARFGEF1Q9Y6D6 1849 aa14.22□□□□□ -0.13
LIG3-214ENST00000592244 BRCA1P38398 1863 aaKnown RBP14.21□□□□□ -0.13
LIG3-214ENST00000592244 ZNF853P0CG23 659 aa14.21□□□□□ -0.13
LIG3-214ENST00000592244 RASSF7Q02833 373 aa14.21□□□□□ -0.13
LIG3-214ENST00000592244 CCDC93Q567U6 631 aa14.21□□□□□ -0.13
LIG3-214ENST00000592244 TAOK3Q9H2K8 898 aa14.21□□□□□ -0.13
LIG3-214ENST00000592244 CHPF2Q9P2E5 772 aa14.21□□□□□ -0.13
LIG3-214ENST00000592244 LTBP3Q9NS15 1303 aa14.2□□□□□ -0.14
LIG3-214ENST00000592244 SENP3-EIF4A1A0A087X0R7 540 aa14.2□□□□□ -0.14
LIG3-214ENST00000592244 ANXA1P04083 346 aa14.2□□□□□ -0.14
LIG3-214ENST00000592244 KRT24Q2M2I5 525 aa14.2□□□□□ -0.14
LIG3-214ENST00000592244 PROSER3Q2NL68 480 aa14.2□□□□□ -0.14
LIG3-214ENST00000592244 GRIPAP1Q4V328 841 aa14.2□□□□□ -0.14
LIG3-214ENST00000592244 SUSD4Q5VX71 490 aa14.2□□□□□ -0.14
LIG3-214ENST00000592244 DPY19L2Q6NUT2 758 aa14.2□□□□□ -0.14
LIG3-214ENST00000592244 LRP10Q7Z4F1 713 aa14.2□□□□□ -0.14
LIG3-214ENST00000592244 NUTM1Q86Y26 1132 aa14.2□□□□□ -0.14
LIG3-214ENST00000592244 RTKN2Q8IZC4 609 aa14.2□□□□□ -0.14
LIG3-214ENST00000592244 NLRP3Q96P20 1036 aa14.2□□□□□ -0.14
LIG3-214ENST00000592244 NFKBIEO00221 500 aa14.19□□□□□ -0.14
LIG3-214ENST00000592244 GOLGA2Q08379 1002 aa14.19□□□□□ -0.14
LIG3-214ENST00000592244 TCIRG1Q13488 830 aa14.19□□□□□ -0.14
LIG3-214ENST00000592244 ERFEQ4G0M1 354 aa14.19□□□□□ -0.14
LIG3-214ENST00000592244 CCDC30Q5VVM6 783 aa14.19□□□□□ -0.14
LIG3-214ENST00000592244 CC2D2BQ6DHV5 1058 aa14.19□□□□□ -0.14
LIG3-214ENST00000592244 ANKRD13DQ6ZTN6 518 aa14.19□□□□□ -0.14
LIG3-214ENST00000592244 PLBD2Q8NHP8 589 aa14.19□□□□□ -0.14
LIG3-214ENST00000592244 RBM17Q96I25 401 aaKnown RBP14.19□□□□□ -0.14
LIG3-214ENST00000592244 UBN2Q6ZU65 1347 aa14.18□□□□□ -0.14
LIG3-214ENST00000592244 RIC1Q4ADV7 1423 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms