RNA–Protein interactions for RNA: ENST00000589753.1

ATG4D-211, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-211ENST00000589753 ZKSCAN2Q63HK3 967 aa19.34■□□□□ 0.69
ATG4D-211ENST00000589753 PLBD2Q8NHP8 589 aa19.34■□□□□ 0.69
ATG4D-211ENST00000589753 C4AP0C0L4 1744 aa19.34■□□□□ 0.69
ATG4D-211ENST00000589753 QSER1Q2KHR3 1735 aa19.34■□□□□ 0.69
ATG4D-211ENST00000589753 MAP3K15Q6ZN16 1313 aa19.33■□□□□ 0.69
ATG4D-211ENST00000589753 KSR2Q6VAB6 950 aa19.33■□□□□ 0.68
ATG4D-211ENST00000589753 RIC3Q7Z5B4 369 aa19.33■□□□□ 0.68
ATG4D-211ENST00000589753 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.33■□□□□ 0.68
ATG4D-211ENST00000589753 API5Q9BZZ5 524 aaKnown RBP19.33■□□□□ 0.68
ATG4D-211ENST00000589753 ZBTB3Q9H5J0 574 aa19.33■□□□□ 0.68
ATG4D-211ENST00000589753 NARFQ9UHQ1 456 aa19.33■□□□□ 0.68
ATG4D-211ENST00000589753 PI4KAP2A4QPH2 592 aa19.32■□□□□ 0.68
ATG4D-211ENST00000589753 ERVV-1B6SEH8 477 aa19.32■□□□□ 0.68
ATG4D-211ENST00000589753 ZPR1O75312 459 aa19.32■□□□□ 0.68
ATG4D-211ENST00000589753 CAMTA2O94983 1202 aa19.32■□□□□ 0.68
ATG4D-211ENST00000589753 COL23A1Q86Y22 540 aaPredicted RBP19.32■□□□□ 0.68
ATG4D-211ENST00000589753 PI4KAP1Q8N8J0 262 aa19.32■□□□□ 0.68
ATG4D-211ENST00000589753 ADCY9O60503 1353 aa19.32■□□□□ 0.68
ATG4D-211ENST00000589753 USP42Q9H9J4 1324 aaKnown RBP19.31■□□□□ 0.68
ATG4D-211ENST00000589753 MSH5O43196 834 aa19.31■□□□□ 0.68
ATG4D-211ENST00000589753 ATF7IPQ6VMQ6 1270 aa19.31■□□□□ 0.68
ATG4D-211ENST00000589753 SRP68Q9UHB9 627 aaKnown RBP19.31■□□□□ 0.68
ATG4D-211ENST00000589753 MAP3K2Q9Y2U5 619 aa19.31■□□□□ 0.68
ATG4D-211ENST00000589753 BCORQ6W2J9 1755 aa19.31■□□□□ 0.68
ATG4D-211ENST00000589753 SCN7AQ01118 1682 aa19.3■□□□□ 0.68
ATG4D-211ENST00000589753 F6X3S4 739 aa19.3■□□□□ 0.68
ATG4D-211ENST00000589753 PLIN1O60240 522 aa19.3■□□□□ 0.68
ATG4D-211ENST00000589753 TRIM27P14373 513 aa19.3■□□□□ 0.68
ATG4D-211ENST00000589753 RRP1P56182 461 aaKnown RBP19.3■□□□□ 0.68
ATG4D-211ENST00000589753 USPL1Q5W0Q7 1092 aa19.3■□□□□ 0.68
ATG4D-211ENST00000589753 DNAAF4Q8WXU2 420 aa19.3■□□□□ 0.68
ATG4D-211ENST00000589753 SUPT16HQ9Y5B9 1047 aaKnown RBP19.3■□□□□ 0.68
ATG4D-211ENST00000589753 ARFGEF2Q9Y6D5 1785 aa19.29■□□□□ 0.68
ATG4D-211ENST00000589753 RGL2O15211 777 aa19.29■□□□□ 0.68
ATG4D-211ENST00000589753 HLFQ16534 295 aa19.29■□□□□ 0.68
ATG4D-211ENST00000589753 GIGYF2Q6Y7W6 1299 aaKnown RBP19.29■□□□□ 0.68
ATG4D-211ENST00000589753 ZNF652Q9Y2D9 606 aa19.29■□□□□ 0.68
ATG4D-211ENST00000589753 METTL22Q9BUU2 404 aaPredicted RBP19.28■□□□□ 0.68
ATG4D-211ENST00000589753 RNF123Q5XPI4 1314 aa19.27■□□□□ 0.68
ATG4D-211ENST00000589753 MS4A1P11836 297 aa19.27■□□□□ 0.68
ATG4D-211ENST00000589753 R3HDM1Q15032 1099 aaKnown RBP19.27■□□□□ 0.68
ATG4D-211ENST00000589753 HSP90AB3PQ58FF7 597 aa19.27■□□□□ 0.68
ATG4D-211ENST00000589753 SLC4A10Q6U841 1118 aa19.27■□□□□ 0.68
ATG4D-211ENST00000589753 CLEC4GQ6UXB4 293 aa19.27■□□□□ 0.68
ATG4D-211ENST00000589753 CLUAP1Q96AJ1 413 aa19.27■□□□□ 0.68
ATG4D-211ENST00000589753 BCL2L12Q9HB09 334 aa19.27■□□□□ 0.68
ATG4D-211ENST00000589753 TNNQ9UQP3 1299 aa19.27■□□□□ 0.68
ATG4D-211ENST00000589753 NUP98P52948 1817 aa19.26■□□□□ 0.67
ATG4D-211ENST00000589753 GYS1P13807 737 aa19.26■□□□□ 0.67
ATG4D-211ENST00000589753 NEXNQ0ZGT2 675 aa19.26■□□□□ 0.67
ATG4D-211ENST00000589753 TCIRG1Q13488 830 aa19.26■□□□□ 0.67
ATG4D-211ENST00000589753 FTSJ3Q8IY81 847 aaKnown RBP19.26■□□□□ 0.67
ATG4D-211ENST00000589753 DZIP1LQ8IYY4 767 aaKnown RBP19.26■□□□□ 0.67
ATG4D-211ENST00000589753 MYD88Q99836 296 aa19.26■□□□□ 0.67
ATG4D-211ENST00000589753 PXDNLA1KZ92 1463 aa19.26■□□□□ 0.67
ATG4D-211ENST00000589753 ABCC4O15439 1325 aa19.25■□□□□ 0.67
ATG4D-211ENST00000589753 FKBP8Q14318 412 aa19.24■□□□□ 0.67
ATG4D-211ENST00000589753 ATP10DQ9P241 1426 aa19.24■□□□□ 0.67
ATG4D-211ENST00000589753 PSDA5PKW4 1024 aaPredicted RBP19.23■□□□□ 0.67
ATG4D-211ENST00000589753 ATP5J2-PTCD1G3V325 749 aa19.23■□□□□ 0.67
ATG4D-211ENST00000589753 CCT4P50991 539 aaKnown RBP19.23■□□□□ 0.67
ATG4D-211ENST00000589753 PDE3AQ14432 1141 aa19.23■□□□□ 0.67
ATG4D-211ENST00000589753 BEND3Q5T5X7 828 aa19.23■□□□□ 0.67
ATG4D-211ENST00000589753 ZNF34Q8IZ26 560 aa19.23■□□□□ 0.67
ATG4D-211ENST00000589753 NLGN1Q8N2Q7 840 aa19.23■□□□□ 0.67
ATG4D-211ENST00000589753 LINS1Q8NG48 757 aa19.23■□□□□ 0.67
ATG4D-211ENST00000589753 SLC16A10Q8TF71 515 aa19.23■□□□□ 0.67
ATG4D-211ENST00000589753 PDGFDQ9GZP0 370 aaPredicted RBP19.23■□□□□ 0.67
ATG4D-211ENST00000589753 ANKRD36CQ5JPF3 1778 aa19.23■□□□□ 0.67
ATG4D-211ENST00000589753 IGKV5-2P06315 115 aa19.22■□□□□ 0.67
ATG4D-211ENST00000589753 RLBP1P12271 317 aa19.22■□□□□ 0.67
ATG4D-211ENST00000589753 TBC1D9BQ66K14 1250 aa19.22■□□□□ 0.67
ATG4D-211ENST00000589753 INTS3Q68E01 1043 aaKnown RBP19.22■□□□□ 0.67
ATG4D-211ENST00000589753 PANK1Q8TE04 598 aa19.22■□□□□ 0.67
ATG4D-211ENST00000589753 ISCA1Q9BUE6 129 aa19.22■□□□□ 0.67
ATG4D-211ENST00000589753 SRCIN1Q9C0H9 1055 aa19.22■□□□□ 0.67
ATG4D-211ENST00000589753 NIP7Q9Y221 180 aaKnown RBP eCLIP19.22■□□□□ 0.67
ATG4D-211ENST00000589753 CASZ1Q86V15 1759 aa19.21■□□□□ 0.67
ATG4D-211ENST00000589753 GPTP24298 496 aa19.21■□□□□ 0.67
ATG4D-211ENST00000589753 TRIM28Q13263 835 aaKnown RBP19.21■□□□□ 0.67
ATG4D-211ENST00000589753 CWF19L2Q2TBE0 894 aaKnown RBP19.21■□□□□ 0.67
ATG4D-211ENST00000589753 C20orf194Q5TEA3 1177 aa19.21■□□□□ 0.67
ATG4D-211ENST00000589753 BICDL1Q6ZP65 573 aa19.21■□□□□ 0.67
ATG4D-211ENST00000589753 TMEM57Q8N5G2 664 aa19.21■□□□□ 0.67
ATG4D-211ENST00000589753 N4BP2Q86UW6 1770 aaPredicted RBP19.21■□□□□ 0.67
ATG4D-211ENST00000589753 NEURL1BA8MQ27 555 aa19.2■□□□□ 0.66
ATG4D-211ENST00000589753 ALDH1L1O75891 902 aa19.2■□□□□ 0.66
ATG4D-211ENST00000589753 NFIXQ14938 502 aa19.2■□□□□ 0.66
ATG4D-211ENST00000589753 SETDB2Q96T68 719 aa19.2■□□□□ 0.66
ATG4D-211ENST00000589753 UBN2Q6ZU65 1347 aa19.2■□□□□ 0.66
ATG4D-211ENST00000589753 AFDNP55196 1824 aaKnown RBP19.19■□□□□ 0.66
ATG4D-211ENST00000589753 PARP10Q53GL7 1025 aa19.19■□□□□ 0.66
ATG4D-211ENST00000589753 MSL1Q68DK7 614 aa19.19■□□□□ 0.66
ATG4D-211ENST00000589753 NLRP10Q86W26 655 aa19.19■□□□□ 0.66
ATG4D-211ENST00000589753 ITPRIPQ8IWB1 547 aa19.19■□□□□ 0.66
ATG4D-211ENST00000589753 CCDC191Q8NCU4 936 aa19.19■□□□□ 0.66
ATG4D-211ENST00000589753 CWC25Q9NXE8 425 aaPredicted RBP19.19■□□□□ 0.66
ATG4D-211ENST00000589753 TM4SF1P30408 202 aa19.18■□□□□ 0.66
ATG4D-211ENST00000589753 CARMIL3Q8ND23 1372 aa19.18■□□□□ 0.66
ATG4D-211ENST00000589753 GCKRQ14397 625 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms