RNA–Protein interactions for RNA: ENST00000585229.1

SMCHD1-212, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 555 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-212ENST00000585229 KIF3CO14782 793 aa12.69□□□□□ -0.38
SMCHD1-212ENST00000585229 GIGYF1O75420 1035 aaPredicted RBP12.69□□□□□ -0.38
SMCHD1-212ENST00000585229 RXRBP28702 533 aa12.69□□□□□ -0.38
SMCHD1-212ENST00000585229 SLC39A6Q13433 755 aa12.69□□□□□ -0.38
SMCHD1-212ENST00000585229 POTEAQ6S8J7 498 aa12.69□□□□□ -0.38
SMCHD1-212ENST00000585229 SUPT16HQ9Y5B9 1047 aaKnown RBP12.69□□□□□ -0.38
SMCHD1-212ENST00000585229 A0A0G2JS52 829 aa12.68□□□□□ -0.38
SMCHD1-212ENST00000585229 PRIM1P49642 420 aaKnown RBP12.68□□□□□ -0.38
SMCHD1-212ENST00000585229 RRP1P56182 461 aaKnown RBP12.68□□□□□ -0.38
SMCHD1-212ENST00000585229 MYT1Q01538 1121 aa12.68□□□□□ -0.38
SMCHD1-212ENST00000585229 TTC5Q8N0Z6 440 aa12.68□□□□□ -0.38
SMCHD1-212ENST00000585229 SSH1Q8WYL5 1049 aa12.68□□□□□ -0.38
SMCHD1-212ENST00000585229 FMNL2Q96PY5 1086 aa12.68□□□□□ -0.38
SMCHD1-212ENST00000585229 CRISPLD2Q9H0B8 497 aa12.68□□□□□ -0.38
SMCHD1-212ENST00000585229 RREB1Q92766 1687 aa12.67□□□□□ -0.38
SMCHD1-212ENST00000585229 N4BP2Q86UW6 1770 aaPredicted RBP12.67□□□□□ -0.38
SMCHD1-212ENST00000585229 BCAR3O75815 825 aa12.67□□□□□ -0.38
SMCHD1-212ENST00000585229 KRT27Q7Z3Y8 459 aa12.67□□□□□ -0.38
SMCHD1-212ENST00000585229 ZNF496Q96IT1 587 aaPredicted RBP12.67□□□□□ -0.38
SMCHD1-212ENST00000585229 CHMP4AQ9BY43 222 aa12.67□□□□□ -0.38
SMCHD1-212ENST00000585229 ATG3Q9NT62 314 aa12.67□□□□□ -0.38
SMCHD1-212ENST00000585229 COL5A3P25940 1745 aaPredicted RBP12.66□□□□□ -0.38
SMCHD1-212ENST00000585229 C2orf72A6NCS6 295 aa12.66□□□□□ -0.38
SMCHD1-212ENST00000585229 ELL2O00472 640 aaPredicted RBP12.66□□□□□ -0.38
SMCHD1-212ENST00000585229 MRPL50Q8N5N7 158 aaKnown RBP12.66□□□□□ -0.38
SMCHD1-212ENST00000585229 KIF16BQ96L93 1317 aa12.65□□□□□ -0.38
SMCHD1-212ENST00000585229 SNRPA1P09661 255 aaKnown RBP12.65□□□□□ -0.38
SMCHD1-212ENST00000585229 FAM196AQ6ZSG2 479 aa12.65□□□□□ -0.38
SMCHD1-212ENST00000585229 SLAIN1Q8ND83 568 aa12.65□□□□□ -0.38
SMCHD1-212ENST00000585229 ACSBG1Q96GR2 724 aa12.65□□□□□ -0.38
SMCHD1-212ENST00000585229 SMC4Q9NTJ3 1288 aa12.65□□□□□ -0.38
SMCHD1-212ENST00000585229 ASAP1Q9ULH1 1129 aa12.65□□□□□ -0.38
SMCHD1-212ENST00000585229 TNS1Q9HBL0 1735 aaKnown RBP12.65□□□□□ -0.38
SMCHD1-212ENST00000585229 ERBB4Q15303 1308 aa12.64□□□□□ -0.39
SMCHD1-212ENST00000585229 RGPD3A6NKT7 1758 aaPredicted RBP12.64□□□□□ -0.39
SMCHD1-212ENST00000585229 RGPD4Q7Z3J3 1758 aa12.64□□□□□ -0.39
SMCHD1-212ENST00000585229 KCNQ2O43526 872 aa12.64□□□□□ -0.39
SMCHD1-212ENST00000585229 HDGFL1Q5TGJ6 251 aa12.64□□□□□ -0.39
SMCHD1-212ENST00000585229 CCDC30Q5VVM6 783 aa12.64□□□□□ -0.39
SMCHD1-212ENST00000585229 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.64□□□□□ -0.39
SMCHD1-212ENST00000585229 SMARCC1Q92922 1105 aaPredicted RBP12.64□□□□□ -0.39
SMCHD1-212ENST00000585229 TAF1LQ8IZX4 1826 aa12.63□□□□□ -0.39
SMCHD1-212ENST00000585229 PRAMEF22A3QJZ6 481 aa12.63□□□□□ -0.39
SMCHD1-212ENST00000585229 ARHGAP45Q92619 1136 aa12.63□□□□□ -0.39
SMCHD1-212ENST00000585229 BCL2L13Q9BXK5 485 aa12.63□□□□□ -0.39
SMCHD1-212ENST00000585229 PALLDQ8WX93 1383 aa12.63□□□□□ -0.39
SMCHD1-212ENST00000585229 SYTL4Q96C24 671 aaPredicted RBP12.62□□□□□ -0.39
SMCHD1-212ENST00000585229 SLC4A9Q96Q91 983 aa12.62□□□□□ -0.39
SMCHD1-212ENST00000585229 PDE3AQ14432 1141 aa12.61□□□□□ -0.39
SMCHD1-212ENST00000585229 PDIA6Q15084 440 aa12.61□□□□□ -0.39
SMCHD1-212ENST00000585229 FAM182BQ5T319 152 aa12.61□□□□□ -0.39
SMCHD1-212ENST00000585229 ZKSCAN2Q63HK3 967 aa12.61□□□□□ -0.39
SMCHD1-212ENST00000585229 STK31Q9BXU1 1019 aa12.61□□□□□ -0.39
SMCHD1-212ENST00000585229 TEX13AQ9BXU3 409 aaPredicted RBP12.61□□□□□ -0.39
SMCHD1-212ENST00000585229 GPHNQ9NQX3 736 aaPredicted RBP12.61□□□□□ -0.39
SMCHD1-212ENST00000585229 USP16Q9Y5T5 823 aa12.61□□□□□ -0.39
SMCHD1-212ENST00000585229 PTPRCP08575 1304 aa12.61□□□□□ -0.39
SMCHD1-212ENST00000585229 PXDNLA1KZ92 1463 aa12.6□□□□□ -0.39
SMCHD1-212ENST00000585229 IPO8O15397 1037 aaKnown RBP12.6□□□□□ -0.39
SMCHD1-212ENST00000585229 PLIN1O60240 522 aa12.6□□□□□ -0.39
SMCHD1-212ENST00000585229 PTCD1O75127 700 aaKnown RBP12.6□□□□□ -0.39
SMCHD1-212ENST00000585229 ATF7IPQ6VMQ6 1270 aa12.6□□□□□ -0.39
SMCHD1-212ENST00000585229 PTF1AQ7RTS3 328 aa12.6□□□□□ -0.39
SMCHD1-212ENST00000585229 LRP10Q7Z4F1 713 aa12.6□□□□□ -0.39
SMCHD1-212ENST00000585229 DDX21Q9NR30 783 aaKnown RBP eCLIP12.6□□□□□ -0.39
SMCHD1-212ENST00000585229 DBF4Q9UBU7 674 aaPredicted RBP12.6□□□□□ -0.39
SMCHD1-212ENST00000585229 NOB1Q9ULX3 412 aaKnown RBP12.6□□□□□ -0.39
SMCHD1-212ENST00000585229 LOC102724428A0A0B4J2F2 783 aa12.59□□□□□ -0.39
SMCHD1-212ENST00000585229 TRIM27P14373 513 aa12.59□□□□□ -0.39
SMCHD1-212ENST00000585229 EIF2S2P20042 333 aaKnown RBP12.59□□□□□ -0.39
SMCHD1-212ENST00000585229 SIK1P57059 783 aa12.59□□□□□ -0.39
SMCHD1-212ENST00000585229 ERICH6BQ5W0A0 696 aa12.59□□□□□ -0.39
SMCHD1-212ENST00000585229 CHPF2Q9P2E5 772 aa12.59□□□□□ -0.39
SMCHD1-212ENST00000585229 MYH14Q7Z406 1995 aaKnown RBP12.59□□□□□ -0.39
SMCHD1-212ENST00000585229 NUP188Q5SRE5 1749 aa12.59□□□□□ -0.39
SMCHD1-212ENST00000585229 ABCC4O15439 1325 aa12.59□□□□□ -0.39
SMCHD1-212ENST00000585229 TCERG1O14776 1098 aaKnown RBP12.58□□□□□ -0.4
SMCHD1-212ENST00000585229 NEFLP07196 543 aa12.58□□□□□ -0.4
SMCHD1-212ENST00000585229 MS4A1P11836 297 aa12.58□□□□□ -0.4
SMCHD1-212ENST00000585229 FLIIQ13045 1269 aa12.58□□□□□ -0.4
SMCHD1-212ENST00000585229 MFSD10Q14728 455 aa12.58□□□□□ -0.4
SMCHD1-212ENST00000585229 DNAJC10Q8IXB1 793 aa12.58□□□□□ -0.4
SMCHD1-212ENST00000585229 TMC2Q8TDI7 906 aa12.58□□□□□ -0.4
SMCHD1-212ENST00000585229 API5Q9BZZ5 524 aaKnown RBP12.58□□□□□ -0.4
SMCHD1-212ENST00000585229 HYPKQ9NX55 129 aa12.58□□□□□ -0.4
SMCHD1-212ENST00000585229 ARFGEF2Q9Y6D5 1785 aa12.57□□□□□ -0.4
SMCHD1-212ENST00000585229 CYP19A1P11511 503 aaPredicted RBP12.57□□□□□ -0.4
SMCHD1-212ENST00000585229 DSG2Q14126 1118 aa12.57□□□□□ -0.4
SMCHD1-212ENST00000585229 PROSER3Q2NL68 480 aa12.57□□□□□ -0.4
SMCHD1-212ENST00000585229 C20orf194Q5TEA3 1177 aa12.57□□□□□ -0.4
SMCHD1-212ENST00000585229 G2E3Q7L622 706 aa12.57□□□□□ -0.4
SMCHD1-212ENST00000585229 NECTIN2Q92692 538 aa12.57□□□□□ -0.4
SMCHD1-212ENST00000585229 FRAT1Q92837 279 aaPredicted RBP12.57□□□□□ -0.4
SMCHD1-212ENST00000585229 EP400Q96L91 3159 aa12.57□□□□□ -0.4
SMCHD1-212ENST00000585229 NBPF26B4DH59 902 aa12.56□□□□□ -0.4
SMCHD1-212ENST00000585229 STARD3NLO95772 234 aa12.56□□□□□ -0.4
SMCHD1-212ENST00000585229 RLBP1P12271 317 aa12.56□□□□□ -0.4
SMCHD1-212ENST00000585229 PDE4AP27815 886 aa12.56□□□□□ -0.4
SMCHD1-212ENST00000585229 CANXP27824 592 aaKnown RBP12.56□□□□□ -0.4
SMCHD1-212ENST00000585229 NBPF14Q5TI25 921 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms