RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 C4orf48Q5BLP8 95 aa3.13□□□□□ -1.91
SMCHD1-211ENST00000584897 PPARGC1BQ86YN6 1023 aaKnown RBP3.13□□□□□ -1.91
SMCHD1-211ENST00000584897 PNMA5Q96PV4 448 aa3.13□□□□□ -1.91
SMCHD1-211ENST00000584897 M0R2N6 131 aa3.12□□□□□ -1.91
SMCHD1-211ENST00000584897 CELA2BP08218 269 aaPredicted RBP3.12□□□□□ -1.91
SMCHD1-211ENST00000584897 TRIM26Q12899 539 aaPredicted RBP3.12□□□□□ -1.91
SMCHD1-211ENST00000584897 SLCO4C1Q6ZQN7 724 aa3.12□□□□□ -1.91
SMCHD1-211ENST00000584897 GTPBP3Q969Y2 492 aaKnown RBP3.12□□□□□ -1.91
SMCHD1-211ENST00000584897 TMPRSS4Q9NRS4 437 aa3.12□□□□□ -1.91
SMCHD1-211ENST00000584897 C9orf172C9J069 976 aa3.12□□□□□ -1.91
SMCHD1-211ENST00000584897 OIP5O43482 229 aa3.12□□□□□ -1.91
SMCHD1-211ENST00000584897 CTSOP43234 321 aaPredicted RBP3.12□□□□□ -1.91
SMCHD1-211ENST00000584897 NRG1Q02297 640 aaPredicted RBP3.12□□□□□ -1.91
SMCHD1-211ENST00000584897 EDARADDQ8WWZ3 215 aa3.12□□□□□ -1.91
SMCHD1-211ENST00000584897 MUC3BQ9H195 1237 aa3.12□□□□□ -1.91
SMCHD1-211ENST00000584897 FER1L4A9Z1Z3 1794 aa3.12□□□□□ -1.91
SMCHD1-211ENST00000584897 MSX1P28360 303 aa3.12□□□□□ -1.91
SMCHD1-211ENST00000584897 CRISPLD1Q9H336 500 aa3.12□□□□□ -1.91
SMCHD1-211ENST00000584897 ARHGEF10LQ9HCE6 1279 aa3.12□□□□□ -1.91
SMCHD1-211ENST00000584897 ZNF232Q9UNY5 417 aa3.12□□□□□ -1.91
SMCHD1-211ENST00000584897 SAMD5Q5TGI4 173 aa3.12□□□□□ -1.91
SMCHD1-211ENST00000584897 RHPN1Q8TCX5 695 aa3.12□□□□□ -1.91
SMCHD1-211ENST00000584897 FGFR3P22607 806 aa3.11□□□□□ -1.91
SMCHD1-211ENST00000584897 VEGFBP49765 207 aa3.11□□□□□ -1.91
SMCHD1-211ENST00000584897 PSMA6P60900 246 aaKnown RBP3.11□□□□□ -1.91
SMCHD1-211ENST00000584897 FAM69CQ0P6D2 419 aa3.11□□□□□ -1.91
SMCHD1-211ENST00000584897 ZNF837Q96EG3 531 aaPredicted RBP3.11□□□□□ -1.91
SMCHD1-211ENST00000584897 MARK1Q9P0L2 795 aa3.11□□□□□ -1.91
SMCHD1-211ENST00000584897 ABCA10Q8WWZ4 1543 aa3.11□□□□□ -1.91
SMCHD1-211ENST00000584897 LILRA1O75019 489 aa3.11□□□□□ -1.91
SMCHD1-211ENST00000584897 FAM157BP0CG42 384 aa3.11□□□□□ -1.91
SMCHD1-211ENST00000584897 PDIA4P13667 645 aaKnown RBP3.11□□□□□ -1.91
SMCHD1-211ENST00000584897 GDF10P55107 478 aa3.11□□□□□ -1.91
SMCHD1-211ENST00000584897 PLPP7Q8NBV4 271 aa3.11□□□□□ -1.91
SMCHD1-211ENST00000584897 SRA1Q9HD15 236 aaKnown RBP3.11□□□□□ -1.91
SMCHD1-211ENST00000584897 SERTM1A2A2V5 107 aa3.11□□□□□ -1.91
SMCHD1-211ENST00000584897 PALM3A6NDB9 673 aaPredicted RBP3.11□□□□□ -1.91
SMCHD1-211ENST00000584897 SMTNP53814 917 aa3.11□□□□□ -1.91
SMCHD1-211ENST00000584897 B4GALNT3Q6L9W6 998 aa3.11□□□□□ -1.91
SMCHD1-211ENST00000584897 FAM117BQ6P1L5 589 aa3.11□□□□□ -1.91
SMCHD1-211ENST00000584897 MICALL1Q8N3F8 863 aa3.11□□□□□ -1.91
SMCHD1-211ENST00000584897 GJD4Q96KN9 370 aaPredicted RBP3.11□□□□□ -1.91
SMCHD1-211ENST00000584897 CUL7Q14999 1698 aa3.11□□□□□ -1.91
SMCHD1-211ENST00000584897 RIMS1Q86UR5 1692 aaKnown RBP3.11□□□□□ -1.91
SMCHD1-211ENST00000584897 ABCC2Q92887 1545 aa3.1□□□□□ -1.91
SMCHD1-211ENST00000584897 PLA2G4AP47712 749 aa3.1□□□□□ -1.91
SMCHD1-211ENST00000584897 HP1BP3Q5SSJ5 553 aaPredicted RBP3.1□□□□□ -1.91
SMCHD1-211ENST00000584897 DIEXFQ68CQ4 756 aaKnown RBP3.1□□□□□ -1.91
SMCHD1-211ENST00000584897 LARGE2Q8N3Y3 721 aa3.1□□□□□ -1.91
SMCHD1-211ENST00000584897 ERICH3Q5RHP9 1530 aa3.1□□□□□ -1.91
SMCHD1-211ENST00000584897 KHNYNO15037 678 aaKnown RBP3.1□□□□□ -1.91
SMCHD1-211ENST00000584897 TEAD4Q15561 434 aa3.1□□□□□ -1.91
SMCHD1-211ENST00000584897 NPM2Q86SE8 214 aaKnown RBP3.1□□□□□ -1.91
SMCHD1-211ENST00000584897 MAP4K3Q8IVH8 894 aa3.1□□□□□ -1.91
SMCHD1-211ENST00000584897 POM121Q96HA1 1249 aa3.1□□□□□ -1.91
SMCHD1-211ENST00000584897 ZFYVE1Q9HBF4 777 aa3.1□□□□□ -1.91
SMCHD1-211ENST00000584897 FNDC3AQ9Y2H6 1198 aaKnown RBP3.1□□□□□ -1.91
SMCHD1-211ENST00000584897 A6NJY4 79 aa3.1□□□□□ -1.91
SMCHD1-211ENST00000584897 SOBPA7XYQ1 873 aa3.1□□□□□ -1.91
SMCHD1-211ENST00000584897 PTCD1O75127 700 aaKnown RBP3.1□□□□□ -1.91
SMCHD1-211ENST00000584897 INHAP05111 366 aa3.1□□□□□ -1.91
SMCHD1-211ENST00000584897 PLEKHM2Q8IWE5 1019 aa3.1□□□□□ -1.91
SMCHD1-211ENST00000584897 KCTD17Q8N5Z5 321 aa3.1□□□□□ -1.91
SMCHD1-211ENST00000584897 ADAMTS19Q8TE59 1207 aa3.1□□□□□ -1.91
SMCHD1-211ENST00000584897 NEFLP07196 543 aa3.09□□□□□ -1.91
SMCHD1-211ENST00000584897 GATA4P43694 442 aa3.09□□□□□ -1.91
SMCHD1-211ENST00000584897 GTF2IP78347 998 aa3.09□□□□□ -1.91
SMCHD1-211ENST00000584897 FOXD4L5Q5VV16 416 aaPredicted RBP3.09□□□□□ -1.91
SMCHD1-211ENST00000584897 ZNF385CQ66K41 422 aaPredicted RBP3.09□□□□□ -1.91
SMCHD1-211ENST00000584897 KCNH4Q9UQ05 1017 aa3.09□□□□□ -1.91
SMCHD1-211ENST00000584897 PHLDB1Q86UU1 1377 aa3.09□□□□□ -1.91
SMCHD1-211ENST00000584897 PATL2C9JE40 543 aaKnown RBP3.09□□□□□ -1.91
SMCHD1-211ENST00000584897 DNAAF2Q9NVR5 837 aaKnown RBP3.09□□□□□ -1.91
SMCHD1-211ENST00000584897 CCDC9Q9Y3X0 531 aaKnown RBP3.09□□□□□ -1.91
SMCHD1-211ENST00000584897 ARHGEF40Q8TER5 1519 aa3.09□□□□□ -1.91
SMCHD1-211ENST00000584897 K7ELQ4 463 aaPredicted RBP3.09□□□□□ -1.92
SMCHD1-211ENST00000584897 TRAK2O60296 914 aa3.09□□□□□ -1.92
SMCHD1-211ENST00000584897 TRIM34Q9BYJ4 488 aa3.09□□□□□ -1.92
SMCHD1-211ENST00000584897 SOGA1O94964 1423 aa3.09□□□□□ -1.92
SMCHD1-211ENST00000584897 LRP5O75197 1615 aa3.08□□□□□ -1.92
SMCHD1-211ENST00000584897 GSC2O15499 205 aa3.08□□□□□ -1.92
SMCHD1-211ENST00000584897 GPAT2Q6NUI2 795 aa3.08□□□□□ -1.92
SMCHD1-211ENST00000584897 KLRG1Q96E93 195 aa3.08□□□□□ -1.92
SMCHD1-211ENST00000584897 CCDC97Q96F63 343 aaPredicted RBP3.08□□□□□ -1.92
SMCHD1-211ENST00000584897 GPAMQ9HCL2 828 aa3.08□□□□□ -1.92
SMCHD1-211ENST00000584897 A0A1W2PNR3 127 aa3.08□□□□□ -1.92
SMCHD1-211ENST00000584897 SPATA31C1P0DKV0 1188 aa3.08□□□□□ -1.92
SMCHD1-211ENST00000584897 YEATS2Q9ULM3 1422 aa3.08□□□□□ -1.92
SMCHD1-211ENST00000584897 KDM5BQ9UGL1 1544 aa3.08□□□□□ -1.92
SMCHD1-211ENST00000584897 FRMPD1Q5SYB0 1578 aa3.08□□□□□ -1.92
SMCHD1-211ENST00000584897 PPP1R12BO60237 982 aaPredicted RBP3.08□□□□□ -1.92
SMCHD1-211ENST00000584897 ARHGEF15O94989 841 aa3.08□□□□□ -1.92
SMCHD1-211ENST00000584897 STAG2Q8N3U4 1231 aa3.08□□□□□ -1.92
SMCHD1-211ENST00000584897 CEP63Q96MT8 703 aa3.08□□□□□ -1.92
SMCHD1-211ENST00000584897 OSBPL3Q9H4L5 887 aa3.08□□□□□ -1.92
SMCHD1-211ENST00000584897 SIN3BO75182 1162 aa3.08□□□□□ -1.92
SMCHD1-211ENST00000584897 ARL4DP49703 201 aa3.08□□□□□ -1.92
SMCHD1-211ENST00000584897 SEC13P55735 322 aa3.08□□□□□ -1.92
SMCHD1-211ENST00000584897 GRIN2CQ14957 1233 aa3.08□□□□□ -1.92
SMCHD1-211ENST00000584897 C4orf17Q53FE4 359 aa3.08□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms