RNA–Protein interactions for RNA: ENST00000583438.1

PPP4R1-225, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 4

Gene PPP4R1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-225	ENST00000583438	FBLN1	P23142	703 aa		11.32	□□□□□ -0.6
PPP4R1-225	ENST00000583438	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	11.32	□□□□□ -0.6
PPP4R1-225	ENST00000583438	PPP1R1B	Q9UD71	204 aa	Predicted RBP	11.32	□□□□□ -0.6
PPP4R1-225	ENST00000583438	C5	P01031	1676 aa		11.32	□□□□□ -0.6
PPP4R1-225	ENST00000583438	MEGF6	O75095	1541 aa		11.31	□□□□□ -0.6
PPP4R1-225	ENST00000583438	KIF20B	Q96Q89	1820 aa		11.31	□□□□□ -0.6
PPP4R1-225	ENST00000583438	POTEM	A6NI47	508 aa		11.31	□□□□□ -0.6
PPP4R1-225	ENST00000583438	KCNQ4	P56696	695 aa		11.31	□□□□□ -0.6
PPP4R1-225	ENST00000583438	NBPF3	Q9H094	633 aa		11.31	□□□□□ -0.6
PPP4R1-225	ENST00000583438	SWT1	Q5T5J6	900 aa	Known RBP	11.3	□□□□□ -0.6
PPP4R1-225	ENST00000583438	LAPTM4B	Q86VI4	370 aa		11.3	□□□□□ -0.6
PPP4R1-225	ENST00000583438	ZNF784	Q8NCA9	323 aa	Predicted RBP	11.3	□□□□□ -0.6
PPP4R1-225	ENST00000583438	DDRGK1	Q96HY6	314 aa		11.3	□□□□□ -0.6
PPP4R1-225	ENST00000583438	SYT17	Q9BSW7	474 aa		11.3	□□□□□ -0.6
PPP4R1-225	ENST00000583438	SLC12A5	Q9H2X9	1139 aa		11.3	□□□□□ -0.6
PPP4R1-225	ENST00000583438	EDC4	Q6P2E9	1401 aa	Known RBP	11.29	□□□□□ -0.6
PPP4R1-225	ENST00000583438	CSB-PGBD3	P0DP91	1061 aa		11.29	□□□□□ -0.6
PPP4R1-225	ENST00000583438	NEUROD1	Q13562	356 aa		11.29	□□□□□ -0.6
PPP4R1-225	ENST00000583438	KCNH5	Q8NCM2	988 aa		11.29	□□□□□ -0.6
PPP4R1-225	ENST00000583438	MAP2	P11137	1827 aa	Known RBP	11.28	□□□□□ -0.6
PPP4R1-225	ENST00000583438	DDX11L8	A8MPP1	907 aa		11.28	□□□□□ -0.6
PPP4R1-225	ENST00000583438	EXOC5	O00471	708 aa		11.28	□□□□□ -0.6
PPP4R1-225	ENST00000583438	MRPL50	Q8N5N7	158 aa	Known RBP	11.28	□□□□□ -0.6
PPP4R1-225	ENST00000583438	ANKRD24	Q8TF21	1146 aa		11.28	□□□□□ -0.6
PPP4R1-225	ENST00000583438	BEGAIN	Q9BUH8	593 aa		11.28	□□□□□ -0.6
PPP4R1-225	ENST00000583438	CDCA7	Q9BWT1	371 aa	Predicted RBP	11.28	□□□□□ -0.6
PPP4R1-225	ENST00000583438	UBR3	Q6ZT12	1888 aa		11.27	□□□□□ -0.6
PPP4R1-225	ENST00000583438	ANKRD26	Q9UPS8	1709 aa		11.27	□□□□□ -0.61
PPP4R1-225	ENST00000583438	C11orf95	C9JLR9	678 aa	Predicted RBP	11.27	□□□□□ -0.61
PPP4R1-225	ENST00000583438	CDAN1	Q8IWY9	1227 aa		11.27	□□□□□ -0.61
PPP4R1-225	ENST00000583438	ZFR	Q96KR1	1074 aa	Known RBP	11.27	□□□□□ -0.61
PPP4R1-225	ENST00000583438	MTFR1L	Q9H019	292 aa		11.27	□□□□□ -0.61
PPP4R1-225	ENST00000583438	STK32B	Q9NY57	414 aa		11.27	□□□□□ -0.61
PPP4R1-225	ENST00000583438	PNPLA7	Q6ZV29	1317 aa		11.27	□□□□□ -0.61
PPP4R1-225	ENST00000583438	MAP3K5	Q99683	1374 aa		11.27	□□□□□ -0.61
PPP4R1-225	ENST00000583438	PKD1L3	Q7Z443	1732 aa		11.26	□□□□□ -0.61
PPP4R1-225	ENST00000583438	CD46	P15529	392 aa		11.26	□□□□□ -0.61
PPP4R1-225	ENST00000583438	SAMD7	Q7Z3H4	446 aa		11.26	□□□□□ -0.61
PPP4R1-225	ENST00000583438	NLRP2	Q9NX02	1062 aa		11.26	□□□□□ -0.61
PPP4R1-225	ENST00000583438	IL2RB	P14784	551 aa		11.25	□□□□□ -0.61
PPP4R1-225	ENST00000583438	TESK2	Q96S53	571 aa		11.25	□□□□□ -0.61
PPP4R1-225	ENST00000583438	KIAA1551	Q9HCM1	1747 aa		11.25	□□□□□ -0.61
PPP4R1-225	ENST00000583438	SULF1	Q8IWU6	871 aa		11.24	□□□□□ -0.61
PPP4R1-225	ENST00000583438	NLGN2	Q8NFZ4	835 aa		11.24	□□□□□ -0.61
PPP4R1-225	ENST00000583438	MAP3K19	Q56UN5	1328 aa		11.24	□□□□□ -0.61
PPP4R1-225	ENST00000583438	CEP350	Q5VT06	3117 aa		11.23	□□□□□ -0.61
PPP4R1-225	ENST00000583438	AMIGO3	Q86WK7	504 aa		11.23	□□□□□ -0.61
PPP4R1-225	ENST00000583438	ARX	Q96QS3	562 aa		11.23	□□□□□ -0.61
PPP4R1-225	ENST00000583438	SLC10A3	P09131	477 aa		11.22	□□□□□ -0.61
PPP4R1-225	ENST00000583438	C4B	P0C0L5	1744 aa		11.22	□□□□□ -0.61
PPP4R1-225	ENST00000583438	TMC1	Q8TDI8	760 aa		11.22	□□□□□ -0.61
PPP4R1-225	ENST00000583438	IP6K1	Q92551	441 aa		11.22	□□□□□ -0.61
PPP4R1-225	ENST00000583438	LTV1	Q96GA3	475 aa	Predicted RBP	11.22	□□□□□ -0.61
PPP4R1-225	ENST00000583438	ANKRD36B	Q8N2N9	1353 aa		11.21	□□□□□ -0.61
PPP4R1-225	ENST00000583438	HOXC9	P31274	260 aa		11.21	□□□□□ -0.61
PPP4R1-225	ENST00000583438	RDH13	Q8NBN7	331 aa		11.21	□□□□□ -0.61
PPP4R1-225	ENST00000583438	CARD11	Q9BXL7	1154 aa		11.21	□□□□□ -0.61
PPP4R1-225	ENST00000583438	YBX3	P16989	372 aa	Known RBP eCLIP	11.2	□□□□□ -0.62
PPP4R1-225	ENST00000583438	SMIM5	Q71RC9	77 aa		11.2	□□□□□ -0.62
PPP4R1-225	ENST00000583438	USHBP1	Q8N6Y0	703 aa		11.2	□□□□□ -0.62
PPP4R1-225	ENST00000583438	DDX54	Q8TDD1	881 aa	Known RBP	11.2	□□□□□ -0.62
PPP4R1-225	ENST00000583438	RRS1	Q15050	365 aa	Known RBP	11.19	□□□□□ -0.62
PPP4R1-225	ENST00000583438	KIF13B	Q9NQT8	1826 aa		11.19	□□□□□ -0.62
PPP4R1-225	ENST00000583438	NBPF6	Q5VWK0	638 aa		11.18	□□□□□ -0.62
PPP4R1-225	ENST00000583438	SLF2	Q8IX21	1173 aa		11.18	□□□□□ -0.62
PPP4R1-225	ENST00000583438	NBPF4	Q96M43	638 aa		11.18	□□□□□ -0.62
PPP4R1-225	ENST00000583438	NCAPD2	Q15021	1401 aa		11.18	□□□□□ -0.62
PPP4R1-225	ENST00000583438	BRCA1	P38398	1863 aa	Known RBP	11.17	□□□□□ -0.62
PPP4R1-225	ENST00000583438	ST20-MTHFS	A0A0A6YYL1	179 aa		11.17	□□□□□ -0.62
PPP4R1-225	ENST00000583438	GOLGA8CP	A6NN73	597 aa		11.17	□□□□□ -0.62
PPP4R1-225	ENST00000583438	RNF40	O75150	1001 aa		11.17	□□□□□ -0.62
PPP4R1-225	ENST00000583438	COL23A1	Q86Y22	540 aa	Predicted RBP	11.17	□□□□□ -0.62
PPP4R1-225	ENST00000583438	SPIRE2	Q8WWL2	714 aa		11.17	□□□□□ -0.62
PPP4R1-225	ENST00000583438	LRCH3	Q96II8	777 aa		11.17	□□□□□ -0.62
PPP4R1-225	ENST00000583438	TBC1D2	Q9BYX2	928 aa		11.17	□□□□□ -0.62
PPP4R1-225	ENST00000583438	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	11.17	□□□□□ -0.62
PPP4R1-225	ENST00000583438	N4BP2	Q86UW6	1770 aa	Predicted RBP	11.17	□□□□□ -0.62
PPP4R1-225	ENST00000583438	C4A	P0C0L4	1744 aa		11.16	□□□□□ -0.62
PPP4R1-225	ENST00000583438	COL5A3	P25940	1745 aa	Predicted RBP	11.16	□□□□□ -0.62
PPP4R1-225	ENST00000583438	GCGR	P47871	477 aa		11.16	□□□□□ -0.62
PPP4R1-225	ENST00000583438	C1QTNF8	P60827	252 aa		11.16	□□□□□ -0.62
PPP4R1-225	ENST00000583438	SH3D19	Q5HYK7	790 aa		11.16	□□□□□ -0.62
PPP4R1-225	ENST00000583438	MSL1	Q68DK7	614 aa		11.16	□□□□□ -0.62
PPP4R1-225	ENST00000583438	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	11.16	□□□□□ -0.62
PPP4R1-225	ENST00000583438	VIRMA	Q69YN4	1812 aa	Known RBP	11.15	□□□□□ -0.62
PPP4R1-225	ENST00000583438	FYB1	O15117	783 aa		11.15	□□□□□ -0.62
PPP4R1-225	ENST00000583438	BCAM	P50895	628 aa		11.15	□□□□□ -0.62
PPP4R1-225	ENST00000583438	SLC27A3	Q5K4L6	730 aa		11.15	□□□□□ -0.62
PPP4R1-225	ENST00000583438	MYSM1	Q5VVJ2	828 aa		11.15	□□□□□ -0.62
PPP4R1-225	ENST00000583438	ANKK1	Q8NFD2	765 aa		11.15	□□□□□ -0.62
PPP4R1-225	ENST00000583438	WNT2B	Q93097	391 aa		11.15	□□□□□ -0.62
PPP4R1-225	ENST00000583438	GGNBP2	Q9H3C7	697 aa		11.15	□□□□□ -0.62
PPP4R1-225	ENST00000583438	GOPC	Q9HD26	462 aa		11.15	□□□□□ -0.62
PPP4R1-225	ENST00000583438	GTF3C3	Q9Y5Q9	886 aa		11.15	□□□□□ -0.62
PPP4R1-225	ENST00000583438	RTL1	A6NKG5	1358 aa		11.15	□□□□□ -0.63
PPP4R1-225	ENST00000583438	MYH14	Q7Z406	1995 aa	Known RBP	11.14	□□□□□ -0.63
PPP4R1-225	ENST00000583438	SOWAHB	A6NEL2	793 aa		11.14	□□□□□ -0.63
PPP4R1-225	ENST00000583438	SLC4A3	P48751	1232 aa		11.14	□□□□□ -0.63
PPP4R1-225	ENST00000583438	SYTL4	Q96C24	671 aa	Predicted RBP	11.14	□□□□□ -0.63
PPP4R1-225	ENST00000583438	RSPH6A	Q9H0K4	717 aa		11.14	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms