RNA–Protein interactions for RNA: ENST00000581711.1

SMCHD1-207, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 546 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-207ENST00000581711 PIK3CDO00329 1044 aa10.62□□□□□ -0.71
SMCHD1-207ENST00000581711 DYRK3O43781 588 aa10.62□□□□□ -0.71
SMCHD1-207ENST00000581711 PRDM6Q9NQX0 595 aa10.62□□□□□ -0.71
SMCHD1-207ENST00000581711 STARD13Q9Y3M8 1113 aa10.62□□□□□ -0.71
SMCHD1-207ENST00000581711 EML1O00423 815 aa10.61□□□□□ -0.71
SMCHD1-207ENST00000581711 SOX11P35716 441 aa10.61□□□□□ -0.71
SMCHD1-207ENST00000581711 TEAD4Q15561 434 aa10.61□□□□□ -0.71
SMCHD1-207ENST00000581711 TNFRSF25Q93038 417 aa10.61□□□□□ -0.71
SMCHD1-207ENST00000581711 SLC30A3Q99726 388 aa10.61□□□□□ -0.71
SMCHD1-207ENST00000581711 ZNF358Q9NW07 568 aa10.61□□□□□ -0.71
SMCHD1-207ENST00000581711 ALBP02768 609 aa10.6□□□□□ -0.71
SMCHD1-207ENST00000581711 SFSWAPQ12872 951 aaKnown RBP10.6□□□□□ -0.71
SMCHD1-207ENST00000581711 EML3Q32P44 896 aa10.6□□□□□ -0.71
SMCHD1-207ENST00000581711 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.6□□□□□ -0.71
SMCHD1-207ENST00000581711 NOS2P35228 1153 aa10.59□□□□□ -0.71
SMCHD1-207ENST00000581711 GTF2IP78347 998 aa10.59□□□□□ -0.71
SMCHD1-207ENST00000581711 C8orf86Q6ZUL3 223 aa10.59□□□□□ -0.71
SMCHD1-207ENST00000581711 NACC1Q96RE7 527 aa10.59□□□□□ -0.71
SMCHD1-207ENST00000581711 NOD1Q9Y239 953 aa10.59□□□□□ -0.71
SMCHD1-207ENST00000581711 EPHA4P54764 986 aa10.58□□□□□ -0.72
SMCHD1-207ENST00000581711 TRIM28Q13263 835 aaKnown RBP10.58□□□□□ -0.72
SMCHD1-207ENST00000581711 MICALL1Q8N3F8 863 aa10.58□□□□□ -0.72
SMCHD1-207ENST00000581711 C7orf43Q8WVR3 580 aa10.58□□□□□ -0.72
SMCHD1-207ENST00000581711 NEUROD4Q9HD90 331 aa10.58□□□□□ -0.72
SMCHD1-207ENST00000581711 ZNF232Q9UNY5 417 aa10.58□□□□□ -0.72
SMCHD1-207ENST00000581711 GPC6Q9Y625 555 aaPredicted RBP10.58□□□□□ -0.72
SMCHD1-207ENST00000581711 NID1P14543 1247 aa10.57□□□□□ -0.72
SMCHD1-207ENST00000581711 ADH7P40394 386 aa10.57□□□□□ -0.72
SMCHD1-207ENST00000581711 PSME1Q06323 249 aa10.57□□□□□ -0.72
SMCHD1-207ENST00000581711 SLC9A9Q8IVB4 645 aa10.57□□□□□ -0.72
SMCHD1-207ENST00000581711 SPEM2Q0P670 501 aa10.56□□□□□ -0.72
SMCHD1-207ENST00000581711 GRIK4Q16099 956 aa10.56□□□□□ -0.72
SMCHD1-207ENST00000581711 PRSS36Q5K4E3 855 aa10.56□□□□□ -0.72
SMCHD1-207ENST00000581711 TBCELQ5QJ74 424 aa10.56□□□□□ -0.72
SMCHD1-207ENST00000581711 ARTNQ5T4W7 220 aa10.56□□□□□ -0.72
SMCHD1-207ENST00000581711 ZFP64Q9NPA5 681 aa10.56□□□□□ -0.72
SMCHD1-207ENST00000581711 SKIP12755 728 aa10.55□□□□□ -0.72
SMCHD1-207ENST00000581711 RAB44Q7Z6P3 723 aaPredicted RBP10.55□□□□□ -0.72
SMCHD1-207ENST00000581711 NEUROD1Q13562 356 aa10.54□□□□□ -0.72
SMCHD1-207ENST00000581711 SH3PXD2AQ5TCZ1 1133 aa10.54□□□□□ -0.72
SMCHD1-207ENST00000581711 TNS4Q8IZW8 715 aa10.54□□□□□ -0.72
SMCHD1-207ENST00000581711 RHPN1Q8TCX5 695 aa10.54□□□□□ -0.72
SMCHD1-207ENST00000581711 SERTM1A2A2V5 107 aa10.53□□□□□ -0.72
SMCHD1-207ENST00000581711 LZTS3O60299 673 aaPredicted RBP10.53□□□□□ -0.72
SMCHD1-207ENST00000581711 NCOA4Q13772 614 aa10.53□□□□□ -0.72
SMCHD1-207ENST00000581711 C20orf204Q6ZNR8 217 aa10.53□□□□□ -0.72
SMCHD1-207ENST00000581711 NFATC2IPQ8NCF5 419 aa10.51□□□□□ -0.73
SMCHD1-207ENST00000581711 BRD7Q9NPI1 651 aa10.51□□□□□ -0.73
SMCHD1-207ENST00000581711 CEP63Q96MT8 703 aa10.5□□□□□ -0.73
SMCHD1-207ENST00000581711 C9orf172C9J069 976 aa10.49□□□□□ -0.73
SMCHD1-207ENST00000581711 KCNQ4P56696 695 aa10.49□□□□□ -0.73
SMCHD1-207ENST00000581711 ADGRE1Q14246 886 aa10.49□□□□□ -0.73
SMCHD1-207ENST00000581711 TRAPPC3LQ5T215 181 aa10.49□□□□□ -0.73
SMCHD1-207ENST00000581711 KRTAP1-3Q8IUG1 177 aa10.49□□□□□ -0.73
SMCHD1-207ENST00000581711 HSH2DQ96JZ2 352 aa10.49□□□□□ -0.73
SMCHD1-207ENST00000581711 LILRB5O75023 590 aa10.48□□□□□ -0.73
SMCHD1-207ENST00000581711 H2AFB1P0C5Y9 115 aa10.48□□□□□ -0.73
SMCHD1-207ENST00000581711 H2AFB2P0C5Z0 115 aa10.48□□□□□ -0.73
SMCHD1-207ENST00000581711 MCM6Q14566 821 aa10.48□□□□□ -0.73
SMCHD1-207ENST00000581711 MBTPS1Q14703 1052 aa10.48□□□□□ -0.73
SMCHD1-207ENST00000581711 C1orf53Q5VUE5 145 aa10.48□□□□□ -0.73
SMCHD1-207ENST00000581711 DEPDC4Q8N2C3 294 aa10.48□□□□□ -0.73
SMCHD1-207ENST00000581711 ALG2Q9H553 416 aa10.48□□□□□ -0.73
SMCHD1-207ENST00000581711 ELNP15502 786 aa10.47□□□□□ -0.73
SMCHD1-207ENST00000581711 SELPP16109 830 aa10.47□□□□□ -0.73
SMCHD1-207ENST00000581711 TYRO3Q06418 890 aa10.47□□□□□ -0.73
SMCHD1-207ENST00000581711 NBPF11Q86T75 865 aa10.47□□□□□ -0.73
SMCHD1-207ENST00000581711 ANKIB1Q9P2G1 1089 aa10.47□□□□□ -0.73
SMCHD1-207ENST00000581711 KCNH4Q9UQ05 1017 aa10.47□□□□□ -0.73
SMCHD1-207ENST00000581711 A0A0A0MRY4 1105 aa10.46□□□□□ -0.73
SMCHD1-207ENST00000581711 SFI1A8K8P3 1242 aa10.46□□□□□ -0.73
SMCHD1-207ENST00000581711 USP17L5A8MUK1 530 aa10.46□□□□□ -0.73
SMCHD1-207ENST00000581711 HIRAP54198 1017 aaPredicted RBP10.46□□□□□ -0.73
SMCHD1-207ENST00000581711 PSMA6P60900 246 aaKnown RBP10.46□□□□□ -0.73
SMCHD1-207ENST00000581711 TXNRD3Q86VQ6 643 aa10.45□□□□□ -0.74
SMCHD1-207ENST00000581711 ZNF280CQ8ND82 737 aa10.45□□□□□ -0.74
SMCHD1-207ENST00000581711 TPCN2Q8NHX9 752 aa10.45□□□□□ -0.74
SMCHD1-207ENST00000581711 BHMTQ93088 406 aa10.45□□□□□ -0.74
SMCHD1-207ENST00000581711 PHACTR1Q9C0D0 580 aa10.45□□□□□ -0.74
SMCHD1-207ENST00000581711 TSPAN10Q9H1Z9 355 aaPredicted RBP10.45□□□□□ -0.74
SMCHD1-207ENST00000581711 HCN4Q9Y3Q4 1203 aa10.45□□□□□ -0.74
SMCHD1-207ENST00000581711 POTEAQ6S8J7 498 aa10.44□□□□□ -0.74
SMCHD1-207ENST00000581711 LENG1Q96BZ8 264 aaPredicted RBP10.44□□□□□ -0.74
SMCHD1-207ENST00000581711 KRTAP4-12Q9BQ66 201 aa10.44□□□□□ -0.74
SMCHD1-207ENST00000581711 KIAA1024Q9UPX6 916 aa10.44□□□□□ -0.74
SMCHD1-207ENST00000581711 COG6Q9Y2V7 657 aa10.44□□□□□ -0.74
SMCHD1-207ENST00000581711 TBC1D8BQ0IIM8 1120 aa10.43□□□□□ -0.74
SMCHD1-207ENST00000581711 LRP8Q14114 963 aa10.43□□□□□ -0.74
SMCHD1-207ENST00000581711 TRIM50Q86XT4 487 aa10.43□□□□□ -0.74
SMCHD1-207ENST00000581711 SUSD3Q96L08 255 aa10.43□□□□□ -0.74
SMCHD1-207ENST00000581711 UBE2OQ9C0C9 1292 aaKnown RBP10.43□□□□□ -0.74
SMCHD1-207ENST00000581711 JPH1Q9HDC5 661 aaPredicted RBP10.43□□□□□ -0.74
SMCHD1-207ENST00000581711 CHMP3Q9Y3E7 222 aa10.43□□□□□ -0.74
SMCHD1-207ENST00000581711 RAC1P63000 192 aa10.42□□□□□ -0.74
SMCHD1-207ENST00000581711 NRG1Q02297 640 aaPredicted RBP10.42□□□□□ -0.74
SMCHD1-207ENST00000581711 SHISA2Q6UWI4 295 aa10.42□□□□□ -0.74
SMCHD1-207ENST00000581711 SLC6A14Q9UN76 642 aa10.42□□□□□ -0.74
SMCHD1-207ENST00000581711 ZBTB7BO15156 539 aaPredicted RBP10.41□□□□□ -0.74
SMCHD1-207ENST00000581711 CCDC102BQ68D86 513 aa10.41□□□□□ -0.74
SMCHD1-207ENST00000581711 LCE3BQ5TA77 95 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms