RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 EXOC6Q8TAG9 804 aa20.46■□□□□ 0.87
SS18-211ENST00000578954 DDX19BQ9UMR2 479 aa20.46■□□□□ 0.87
SS18-211ENST00000578954 MAP3K2Q9Y2U5 619 aa20.46■□□□□ 0.87
SS18-211ENST00000578954 RPS6KA4O75676 772 aa20.45■□□□□ 0.86
SS18-211ENST00000578954 AAMPQ13685 434 aa20.45■□□□□ 0.86
SS18-211ENST00000578954 CCDC125Q86Z20 511 aa20.45■□□□□ 0.86
SS18-211ENST00000578954 CAMKK2Q96RR4 588 aa20.45■□□□□ 0.86
SS18-211ENST00000578954 COL15A1P39059 1388 aa20.45■□□□□ 0.86
SS18-211ENST00000578954 BEND3Q5T5X7 828 aa20.44■□□□□ 0.86
SS18-211ENST00000578954 ITPRIPQ8IWB1 547 aa20.44■□□□□ 0.86
SS18-211ENST00000578954 METTL22Q9BUU2 404 aaPredicted RBP20.44■□□□□ 0.86
SS18-211ENST00000578954 GTF3C3Q9Y5Q9 886 aa20.44■□□□□ 0.86
SS18-211ENST00000578954 MAP3K15Q6ZN16 1313 aa20.44■□□□□ 0.86
SS18-211ENST00000578954 RGL2O15211 777 aa20.43■□□□□ 0.86
SS18-211ENST00000578954 RIC3Q7Z5B4 369 aa20.43■□□□□ 0.86
SS18-211ENST00000578954 UBR3Q6ZT12 1888 aa20.43■□□□□ 0.86
SS18-211ENST00000578954 BCORQ6W2J9 1755 aa20.42■□□□□ 0.86
SS18-211ENST00000578954 A0A087WZG4 1122 aa20.42■□□□□ 0.86
SS18-211ENST00000578954 ERVV-1B6SEH8 477 aa20.42■□□□□ 0.86
SS18-211ENST00000578954 SLC4A10Q6U841 1118 aa20.42■□□□□ 0.86
SS18-211ENST00000578954 KIF6Q6ZMV9 814 aa20.42■□□□□ 0.86
SS18-211ENST00000578954 ZBTB7BO15156 539 aaPredicted RBP20.41■□□□□ 0.86
SS18-211ENST00000578954 GNPATO15228 680 aa20.41■□□□□ 0.86
SS18-211ENST00000578954 ALDH1L1O75891 902 aa20.41■□□□□ 0.86
SS18-211ENST00000578954 BAG6P46379 1132 aa20.41■□□□□ 0.86
SS18-211ENST00000578954 SF3B2Q13435 895 aaKnown RBP20.41■□□□□ 0.86
SS18-211ENST00000578954 DZIP3Q86Y13 1208 aaKnown RBP20.41■□□□□ 0.86
SS18-211ENST00000578954 LINS1Q8NG48 757 aa20.41■□□□□ 0.86
SS18-211ENST00000578954 SRCIN1Q9C0H9 1055 aa20.41■□□□□ 0.86
SS18-211ENST00000578954 CHMP4BQ9H444 224 aaKnown RBP20.41■□□□□ 0.86
SS18-211ENST00000578954 ADRA2BP18089 450 aa20.4■□□□□ 0.86
SS18-211ENST00000578954 SCN7AQ01118 1682 aa20.4■□□□□ 0.86
SS18-211ENST00000578954 NPM2Q86SE8 214 aaKnown RBP20.4■□□□□ 0.86
SS18-211ENST00000578954 AK7Q96M32 723 aa20.4■□□□□ 0.86
SS18-211ENST00000578954 RTCBQ9Y3I0 505 aaKnown RBP20.4■□□□□ 0.86
SS18-211ENST00000578954 ZNF330Q9Y3S2 320 aaPredicted RBP20.4■□□□□ 0.86
SS18-211ENST00000578954 CAMTA2O94983 1202 aa20.39■□□□□ 0.85
SS18-211ENST00000578954 IGKV5-2P06315 115 aa20.39■□□□□ 0.85
SS18-211ENST00000578954 NEXNQ0ZGT2 675 aa20.39■□□□□ 0.85
SS18-211ENST00000578954 GIGYF2Q6Y7W6 1299 aaKnown RBP20.39■□□□□ 0.85
SS18-211ENST00000578954 AKT1S1Q96B36 256 aa20.39■□□□□ 0.85
SS18-211ENST00000578954 ZBTB3Q9H5J0 574 aa20.39■□□□□ 0.85
SS18-211ENST00000578954 ZBTB40Q9NUA8 1239 aa20.39■□□□□ 0.85
SS18-211ENST00000578954 EN1Q05925 392 aaPredicted RBP20.38■□□□□ 0.85
SS18-211ENST00000578954 EZH2Q15910 746 aaKnown RBP20.38■□□□□ 0.85
SS18-211ENST00000578954 AMIGO3Q86WK7 504 aa20.38■□□□□ 0.85
SS18-211ENST00000578954 ANKRD36CQ5JPF3 1778 aa20.38■□□□□ 0.85
SS18-211ENST00000578954 C4AP0C0L4 1744 aa20.38■□□□□ 0.85
SS18-211ENST00000578954 NUP98P52948 1817 aa20.37■□□□□ 0.85
SS18-211ENST00000578954 NEURL1BA8MQ27 555 aa20.37■□□□□ 0.85
SS18-211ENST00000578954 SSFA2P28290 1259 aa20.37■□□□□ 0.85
SS18-211ENST00000578954 TRIM28Q13263 835 aaKnown RBP20.37■□□□□ 0.85
SS18-211ENST00000578954 TCIRG1Q13488 830 aa20.37■□□□□ 0.85
SS18-211ENST00000578954 HSP90AB3PQ58FF7 597 aa20.37■□□□□ 0.85
SS18-211ENST00000578954 MYD88Q99836 296 aa20.37■□□□□ 0.85
SS18-211ENST00000578954 ISCA1Q9BUE6 129 aa20.37■□□□□ 0.85
SS18-211ENST00000578954 TBC1D2BQ9UPU7 963 aa20.37■□□□□ 0.85
SS18-211ENST00000578954 NARFQ9UHQ1 456 aa20.36■□□□□ 0.85
SS18-211ENST00000578954 UTYO14607 1347 aa20.35■□□□□ 0.85
SS18-211ENST00000578954 HLFQ16534 295 aa20.35■□□□□ 0.85
SS18-211ENST00000578954 ZNF827Q17R98 1081 aa20.35■□□□□ 0.85
SS18-211ENST00000578954 CLEC4GQ6UXB4 293 aa20.35■□□□□ 0.85
SS18-211ENST00000578954 MEIS3Q99687 375 aa20.35■□□□□ 0.85
SS18-211ENST00000578954 USP44Q9H0E7 712 aa20.35■□□□□ 0.85
SS18-211ENST00000578954 TUBGCP6Q96RT7 1819 aa20.34■□□□□ 0.85
SS18-211ENST00000578954 CWF19L2Q2TBE0 894 aaKnown RBP20.34■□□□□ 0.85
SS18-211ENST00000578954 DEFB132Q7Z7B7 95 aa20.34■□□□□ 0.85
SS18-211ENST00000578954 CCDC191Q8NCU4 936 aa20.34■□□□□ 0.85
SS18-211ENST00000578954 ARHGEF1Q92888 912 aaKnown RBP20.34■□□□□ 0.85
SS18-211ENST00000578954 PPP4R2Q9NY27 417 aa20.34■□□□□ 0.85
SS18-211ENST00000578954 AFDNP55196 1824 aaKnown RBP20.34■□□□□ 0.85
SS18-211ENST00000578954 QSER1Q2KHR3 1735 aa20.33■□□□□ 0.85
SS18-211ENST00000578954 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.33■□□□□ 0.85
SS18-211ENST00000578954 GNAI3P08754 354 aa20.33■□□□□ 0.85
SS18-211ENST00000578954 GCKRQ14397 625 aa20.33■□□□□ 0.85
SS18-211ENST00000578954 TRAPPC3LQ5T215 181 aa20.33■□□□□ 0.85
SS18-211ENST00000578954 USP42Q9H9J4 1324 aaKnown RBP20.32■□□□□ 0.84
SS18-211ENST00000578954 ZNF34Q8IZ26 560 aa20.32■□□□□ 0.84
SS18-211ENST00000578954 BCL2L12Q9HB09 334 aa20.32■□□□□ 0.84
SS18-211ENST00000578954 ZNF652Q9Y2D9 606 aa20.32■□□□□ 0.84
SS18-211ENST00000578954 ATP5J2-PTCD1G3V325 749 aa20.31■□□□□ 0.84
SS18-211ENST00000578954 GRM8O00222 908 aa20.31■□□□□ 0.84
SS18-211ENST00000578954 SMIM5Q71RC9 77 aa20.31■□□□□ 0.84
SS18-211ENST00000578954 UPF1Q92900 1129 aaKnown RBP eCLIP20.31■□□□□ 0.84
SS18-211ENST00000578954 ARXQ96QS3 562 aa20.31■□□□□ 0.84
SS18-211ENST00000578954 CWC25Q9NXE8 425 aaPredicted RBP20.31■□□□□ 0.84
SS18-211ENST00000578954 FLAD1Q8NFF5 587 aa20.3■□□□□ 0.84
SS18-211ENST00000578954 ANO8Q9HCE9 1232 aaPredicted RBP20.3■□□□□ 0.84
SS18-211ENST00000578954 ZPR1O75312 459 aa20.29■□□□□ 0.84
SS18-211ENST00000578954 PHF14O94880 888 aa20.29■□□□□ 0.84
SS18-211ENST00000578954 NBPF7P0C2Y1 421 aaPredicted RBP20.29■□□□□ 0.84
SS18-211ENST00000578954 UBTFL1P0CB47 393 aaPredicted RBP20.29■□□□□ 0.84
SS18-211ENST00000578954 RFC4P35249 363 aa20.29■□□□□ 0.84
SS18-211ENST00000578954 CASP7P55210 303 aa20.29■□□□□ 0.84
SS18-211ENST00000578954 USPL1Q5W0Q7 1092 aa20.29■□□□□ 0.84
SS18-211ENST00000578954 NLRP10Q86W26 655 aa20.29■□□□□ 0.84
SS18-211ENST00000578954 PCDHB15Q9Y5E8 787 aa20.29■□□□□ 0.84
SS18-211ENST00000578954 UBN2Q6ZU65 1347 aa20.28■□□□□ 0.84
SS18-211ENST00000578954 COL24A1Q17RW2 1714 aa20.28■□□□□ 0.84
SS18-211ENST00000578954 H7C1W4 665 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms