RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 HSP90AB2PQ58FF8 381 aa9.01□□□□□ -0.97
VPS53-217ENST00000575100 PXYLP1Q8TE99 480 aa9.01□□□□□ -0.97
VPS53-217ENST00000575100 PMM1Q92871 262 aa9.01□□□□□ -0.97
VPS53-217ENST00000575100 IQSEC3Q9UPP2 1182 aaPredicted RBP9.01□□□□□ -0.97
VPS53-217ENST00000575100 ARHGEF28Q8N1W1 1705 aaKnown RBP9□□□□□ -0.97
VPS53-217ENST00000575100 KIF7Q2M1P5 1343 aa9□□□□□ -0.97
VPS53-217ENST00000575100 SPATA31A3Q5VYP0 1347 aa9□□□□□ -0.97
VPS53-217ENST00000575100 RBL2Q08999 1139 aa9□□□□□ -0.97
VPS53-217ENST00000575100 SEMA3FQ13275 785 aa9□□□□□ -0.97
VPS53-217ENST00000575100 TMC2Q8TDI7 906 aa9□□□□□ -0.97
VPS53-217ENST00000575100 PLEKHH1Q9ULM0 1364 aa9□□□□□ -0.97
VPS53-217ENST00000575100 U2SURPO15042 1029 aaKnown RBP8.99□□□□□ -0.97
VPS53-217ENST00000575100 MAP3K13O43283 966 aa8.99□□□□□ -0.97
VPS53-217ENST00000575100 SCNN1AP37088 669 aa8.99□□□□□ -0.97
VPS53-217ENST00000575100 SAFB2Q14151 953 aaKnown RBP eCLIP8.99□□□□□ -0.97
VPS53-217ENST00000575100 GMLQ99445 158 aa8.99□□□□□ -0.97
VPS53-217ENST00000575100 ZRANB1Q9UGI0 708 aa8.99□□□□□ -0.97
VPS53-217ENST00000575100 PCDHB15Q9Y5E8 787 aa8.99□□□□□ -0.97
VPS53-217ENST00000575100 CCDC7Q96M83 1385 aa8.99□□□□□ -0.97
VPS53-217ENST00000575100 NRAPQ86VF7 1730 aa8.99□□□□□ -0.97
VPS53-217ENST00000575100 ADGRB2O60241 1585 aa8.99□□□□□ -0.97
VPS53-217ENST00000575100 BLMP54132 1417 aaPredicted RBP8.99□□□□□ -0.97
VPS53-217ENST00000575100 FAM196BA6NMK8 535 aa8.99□□□□□ -0.97
VPS53-217ENST00000575100 FOXO3O43524 673 aa8.99□□□□□ -0.97
VPS53-217ENST00000575100 PPFIA4O75335 1185 aa8.99□□□□□ -0.97
VPS53-217ENST00000575100 DDX10Q13206 875 aaKnown RBP8.99□□□□□ -0.97
VPS53-217ENST00000575100 ZNF746Q6NUN9 644 aaPredicted RBP8.99□□□□□ -0.97
VPS53-217ENST00000575100 WAPLQ7Z5K2 1190 aa8.99□□□□□ -0.97
VPS53-217ENST00000575100 UNC5CLQ8IV45 518 aa8.99□□□□□ -0.97
VPS53-217ENST00000575100 NME8Q8N427 588 aa8.99□□□□□ -0.97
VPS53-217ENST00000575100 ZSWIM4Q9H7M6 989 aa8.99□□□□□ -0.97
VPS53-217ENST00000575100 LRP5O75197 1615 aa8.99□□□□□ -0.97
VPS53-217ENST00000575100 TNS3Q68CZ2 1445 aa8.98□□□□□ -0.97
VPS53-217ENST00000575100 DLC1Q96QB1 1528 aa8.98□□□□□ -0.97
VPS53-217ENST00000575100 TRPM3Q9HCF6 1732 aaPredicted RBP8.98□□□□□ -0.97
VPS53-217ENST00000575100 MOXD2PA6NHM9 499 aa8.98□□□□□ -0.97
VPS53-217ENST00000575100 PPP1R3GB7ZBB8 358 aa8.98□□□□□ -0.97
VPS53-217ENST00000575100 CREB3O43889 395 aa8.98□□□□□ -0.97
VPS53-217ENST00000575100 ATP2B4P23634 1241 aa8.98□□□□□ -0.97
VPS53-217ENST00000575100 JAZF1Q86VZ6 243 aa8.98□□□□□ -0.97
VPS53-217ENST00000575100 ZCRB1Q8TBF4 217 aaKnown RBP8.98□□□□□ -0.97
VPS53-217ENST00000575100 PRAM1Q96QH2 718 aa8.98□□□□□ -0.97
VPS53-217ENST00000575100 CENPJQ9HC77 1338 aaPredicted RBP8.98□□□□□ -0.97
VPS53-217ENST00000575100 XPCQ01831 940 aaPredicted RBP8.97□□□□□ -0.97
VPS53-217ENST00000575100 TMTC2Q8N394 836 aa8.97□□□□□ -0.97
VPS53-217ENST00000575100 EGFL7Q9UHF1 273 aa8.97□□□□□ -0.97
VPS53-217ENST00000575100 SBNO1A3KN83 1393 aa8.97□□□□□ -0.97
VPS53-217ENST00000575100 QRICH2Q9H0J4 1663 aa8.97□□□□□ -0.97
VPS53-217ENST00000575100 EIF3AQ14152 1382 aaKnown RBP8.97□□□□□ -0.97
VPS53-217ENST00000575100 DIEXFQ68CQ4 756 aaKnown RBP8.97□□□□□ -0.97
VPS53-217ENST00000575100 TGIF2Q9GZN2 237 aa8.97□□□□□ -0.97
VPS53-217ENST00000575100 CRYBG1Q9Y4K1 1723 aa8.97□□□□□ -0.97
VPS53-217ENST00000575100 ALS2Q96Q42 1657 aa8.96□□□□□ -0.97
VPS53-217ENST00000575100 CRTC2Q53ET0 693 aaPredicted RBP8.96□□□□□ -0.98
VPS53-217ENST00000575100 C1orf216Q8TAB5 229 aa8.96□□□□□ -0.98
VPS53-217ENST00000575100 IRF2BPLQ9H1B7 796 aa8.96□□□□□ -0.98
VPS53-217ENST00000575100 ANKARQ7Z5J8 1434 aa8.96□□□□□ -0.98
VPS53-217ENST00000575100 HMGB1P1B2RPK0 211 aaPredicted RBP8.95□□□□□ -0.98
VPS53-217ENST00000575100 HSD3B2P26439 372 aa8.95□□□□□ -0.98
VPS53-217ENST00000575100 EN1Q05925 392 aaPredicted RBP8.95□□□□□ -0.98
VPS53-217ENST00000575100 EAPPQ56P03 285 aaPredicted RBP8.95□□□□□ -0.98
VPS53-217ENST00000575100 PRPF38BQ5VTL8 546 aaKnown RBP8.95□□□□□ -0.98
VPS53-217ENST00000575100 KRT28Q7Z3Y7 464 aa8.95□□□□□ -0.98
VPS53-217ENST00000575100 CABLES1Q8TDN4 633 aa8.95□□□□□ -0.98
VPS53-217ENST00000575100 COL4A3BPQ9Y5P4 624 aa8.95□□□□□ -0.98
VPS53-217ENST00000575100 COL14A1Q05707 1796 aaKnown RBP8.95□□□□□ -0.98
VPS53-217ENST00000575100 TULP4Q9NRJ4 1543 aa8.95□□□□□ -0.98
VPS53-217ENST00000575100 MAPK1P28482 360 aa8.95□□□□□ -0.98
VPS53-217ENST00000575100 VPS72Q15906 364 aa8.95□□□□□ -0.98
VPS53-217ENST00000575100 PLEKHG6Q3KR16 790 aa8.95□□□□□ -0.98
VPS53-217ENST00000575100 FOXD4L6Q3SYB3 417 aaPredicted RBP8.95□□□□□ -0.98
VPS53-217ENST00000575100 FOXD4L3Q6VB84 417 aaPredicted RBP8.95□□□□□ -0.98
VPS53-217ENST00000575100 GABBR1Q9UBS5 961 aa8.95□□□□□ -0.98
VPS53-217ENST00000575100 ARHGEF10O15013 1369 aa8.94□□□□□ -0.98
VPS53-217ENST00000575100 RGPD1P0DJD0 1748 aa8.94□□□□□ -0.98
VPS53-217ENST00000575100 USP17L15C9J2P7 530 aa8.94□□□□□ -0.98
VPS53-217ENST00000575100 USP17L10C9JJH3 530 aa8.94□□□□□ -0.98
VPS53-217ENST00000575100 USP17L13C9JLJ4 530 aa8.94□□□□□ -0.98
VPS53-217ENST00000575100 USP17L12C9JPN9 530 aa8.94□□□□□ -0.98
VPS53-217ENST00000575100 USP17L11C9JVI0 530 aa8.94□□□□□ -0.98
VPS53-217ENST00000575100 USP17L21D6R901 530 aa8.94□□□□□ -0.98
VPS53-217ENST00000575100 USP17L18D6R9N7 530 aa8.94□□□□□ -0.98
VPS53-217ENST00000575100 USP17L22D6RA61 530 aa8.94□□□□□ -0.98
VPS53-217ENST00000575100 USP17L17D6RBQ6 530 aa8.94□□□□□ -0.98
VPS53-217ENST00000575100 USP17L19D6RCP7 530 aa8.94□□□□□ -0.98
VPS53-217ENST00000575100 USP17L20D6RJB6 530 aa8.94□□□□□ -0.98
VPS53-217ENST00000575100 USP17L24Q0WX57 530 aa8.94□□□□□ -0.98
VPS53-217ENST00000575100 RPUSD2Q8IZ73 545 aaKnown RBP8.94□□□□□ -0.98
VPS53-217ENST00000575100 PMFBP1Q8TBY8 1022 aa8.94□□□□□ -0.98
VPS53-217ENST00000575100 KIF12Q96FN5 646 aa8.94□□□□□ -0.98
VPS53-217ENST00000575100 SPOCK3Q9BQ16 436 aa8.94□□□□□ -0.98
VPS53-217ENST00000575100 CAPN10Q9HC96 672 aa8.94□□□□□ -0.98
VPS53-217ENST00000575100 DMGDHQ9UI17 866 aaKnown RBP8.94□□□□□ -0.98
VPS53-217ENST00000575100 DCTN4Q9UJW0 460 aa8.94□□□□□ -0.98
VPS53-217ENST00000575100 ADGRG1Q9Y653 693 aa8.94□□□□□ -0.98
VPS53-217ENST00000575100 USP17L3A6NCW0 530 aa8.93□□□□□ -0.98
VPS53-217ENST00000575100 USP17L4A6NCW7 530 aa8.93□□□□□ -0.98
VPS53-217ENST00000575100 TMF1P82094 1093 aa8.93□□□□□ -0.98
VPS53-217ENST00000575100 RNF187Q5TA31 235 aaPredicted RBP8.93□□□□□ -0.98
VPS53-217ENST00000575100 USP17L2Q6R6M4 530 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms