RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 CTBSQ01459 385 aa6.45□□□□□ -1.38
NUP88-209ENST00000574855 SAMD5Q5TGI4 173 aa6.45□□□□□ -1.38
NUP88-209ENST00000574855 POTEAQ6S8J7 498 aa6.45□□□□□ -1.38
NUP88-209ENST00000574855 LRRC69Q6ZNQ3 347 aa6.45□□□□□ -1.38
NUP88-209ENST00000574855 RHPN1Q8TCX5 695 aa6.45□□□□□ -1.38
NUP88-209ENST00000574855 C7orf43Q8WVR3 580 aa6.45□□□□□ -1.38
NUP88-209ENST00000574855 CCDC97Q96F63 343 aaPredicted RBP6.45□□□□□ -1.38
NUP88-209ENST00000574855 ARXQ96QS3 562 aa6.45□□□□□ -1.38
NUP88-209ENST00000574855 C2orf49Q9BVC5 232 aaPredicted RBP6.45□□□□□ -1.38
NUP88-209ENST00000574855 PHACTR1Q9C0D0 580 aa6.45□□□□□ -1.38
NUP88-209ENST00000574855 ANKIB1Q9P2G1 1089 aa6.45□□□□□ -1.38
NUP88-209ENST00000574855 GDF2Q9UK05 429 aaPredicted RBP6.45□□□□□ -1.38
NUP88-209ENST00000574855 DCDC2BA2VCK2 349 aa6.44□□□□□ -1.38
NUP88-209ENST00000574855 FAM157BP0CG42 384 aa6.44□□□□□ -1.38
NUP88-209ENST00000574855 SERPINA10Q9UK55 444 aa6.44□□□□□ -1.38
NUP88-209ENST00000574855 C2CD2LO14523 706 aa6.43□□□□□ -1.38
NUP88-209ENST00000574855 IGFBP4P22692 258 aa6.43□□□□□ -1.38
NUP88-209ENST00000574855 LAMC2Q13753 1193 aa6.43□□□□□ -1.38
NUP88-209ENST00000574855 FAM182BQ5T319 152 aa6.43□□□□□ -1.38
NUP88-209ENST00000574855 ALDH16A1Q8IZ83 802 aa6.43□□□□□ -1.38
NUP88-209ENST00000574855 GOLGA6L1Q8N7Z2 621 aa6.43□□□□□ -1.38
NUP88-209ENST00000574855 NEDD1Q8NHV4 660 aa6.43□□□□□ -1.38
NUP88-209ENST00000574855 MARK1Q9P0L2 795 aa6.43□□□□□ -1.38
NUP88-209ENST00000574855 NOVA2Q9UNW9 492 aaKnown RBP6.43□□□□□ -1.38
NUP88-209ENST00000574855 RNF225M0QZC1 329 aaPredicted RBP6.42□□□□□ -1.38
NUP88-209ENST00000574855 OIP5O43482 229 aa6.42□□□□□ -1.38
NUP88-209ENST00000574855 LGR5O75473 907 aa6.42□□□□□ -1.38
NUP88-209ENST00000574855 CD33P20138 364 aa6.42□□□□□ -1.38
NUP88-209ENST00000574855 HIF1AQ16665 826 aa6.42□□□□□ -1.38
NUP88-209ENST00000574855 GALNT6Q8NCL4 622 aa6.42□□□□□ -1.38
NUP88-209ENST00000574855 SCARF2Q96GP6 870 aaPredicted RBP6.42□□□□□ -1.38
NUP88-209ENST00000574855 ARID3CA6NKF2 412 aa6.41□□□□□ -1.38
NUP88-209ENST00000574855 EFSO43281 561 aa6.41□□□□□ -1.38
NUP88-209ENST00000574855 ARAFP10398 606 aa6.41□□□□□ -1.38
NUP88-209ENST00000574855 KCNMA1Q12791 1236 aa6.41□□□□□ -1.38
NUP88-209ENST00000574855 ELOAQ14241 798 aaKnown RBP6.41□□□□□ -1.38
NUP88-209ENST00000574855 C14orf37Q86TY3 774 aa6.41□□□□□ -1.38
NUP88-209ENST00000574855 EDARADDQ8WWZ3 215 aa6.41□□□□□ -1.38
NUP88-209ENST00000574855 NGLY1Q96IV0 654 aa6.41□□□□□ -1.38
NUP88-209ENST00000574855 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.41□□□□□ -1.381e-8■■■■■ 38.5
NUP88-209ENST00000574855 GGA1Q9UJY5 639 aa6.41□□□□□ -1.38
NUP88-209ENST00000574855 PRR12Q9ULL5 1215 aa6.41□□□□□ -1.38
NUP88-209ENST00000574855 DNMT3AQ9Y6K1 912 aaPredicted RBP6.41□□□□□ -1.38
NUP88-209ENST00000574855 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.4□□□□□ -1.38
NUP88-209ENST00000574855 WEE1P30291 646 aa6.4□□□□□ -1.38
NUP88-209ENST00000574855 SRPK2P78362 688 aaKnown RBP6.4□□□□□ -1.38
NUP88-209ENST00000574855 BEND7Q8N7W2 519 aaPredicted RBP6.4□□□□□ -1.38
NUP88-209ENST00000574855 VTI1AQ96AJ9 217 aa6.4□□□□□ -1.38
NUP88-209ENST00000574855 SUSD3Q96L08 255 aa6.4□□□□□ -1.38
NUP88-209ENST00000574855 CEP63Q96MT8 703 aa6.4□□□□□ -1.38
NUP88-209ENST00000574855 AVENQ9NQS1 362 aaPredicted RBP6.4□□□□□ -1.38
NUP88-209ENST00000574855 STRN4Q9NRL3 753 aa6.4□□□□□ -1.38
NUP88-209ENST00000574855 NEURL1BA8MQ27 555 aa6.39□□□□□ -1.39
NUP88-209ENST00000574855 FOXO3O43524 673 aa6.39□□□□□ -1.39
NUP88-209ENST00000574855 ATG7O95352 703 aa6.39□□□□□ -1.39
NUP88-209ENST00000574855 ADH6P28332 368 aa6.39□□□□□ -1.39
NUP88-209ENST00000574855 RTN1Q16799 776 aa6.39□□□□□ -1.39
NUP88-209ENST00000574855 SWI5Q1ZZU3 235 aa6.39□□□□□ -1.39
NUP88-209ENST00000574855 SLCO4C1Q6ZQN7 724 aa6.39□□□□□ -1.39
NUP88-209ENST00000574855 C1orf229Q6ZS94 237 aaPredicted RBP6.39□□□□□ -1.39
NUP88-209ENST00000574855 PODNQ7Z5L7 613 aa6.39□□□□□ -1.39
NUP88-209ENST00000574855 ZNF280CQ8ND82 737 aa6.39□□□□□ -1.39
NUP88-209ENST00000574855 PBXIP1Q96AQ6 731 aa6.39□□□□□ -1.39
NUP88-209ENST00000574855 HSH2DQ96JZ2 352 aa6.39□□□□□ -1.39
NUP88-209ENST00000574855 HCN2Q9UL51 889 aa6.39□□□□□ -1.39
NUP88-209ENST00000574855 ACIN1Q9UKV3 1341 aaKnown RBP6.39□□□□□ -1.39
NUP88-209ENST00000574855 EPXP11678 715 aa6.38□□□□□ -1.39
NUP88-209ENST00000574855 BRD7Q9NPI1 651 aa6.38□□□□□ -1.39
NUP88-209ENST00000574855 CNTNAP5Q8WYK1 1306 aa6.37□□□□□ -1.39
NUP88-209ENST00000574855 PHF20L1A8MW92 1017 aa6.37□□□□□ -1.39
NUP88-209ENST00000574855 SHISA8B8ZZ34 492 aa6.37□□□□□ -1.39
NUP88-209ENST00000574855 AMPD1P23109 780 aa6.37□□□□□ -1.39
NUP88-209ENST00000574855 IRS1P35568 1242 aa6.37□□□□□ -1.39
NUP88-209ENST00000574855 PCBP4P57723 403 aaKnown RBP6.37□□□□□ -1.39
NUP88-209ENST00000574855 RASSF7Q02833 373 aa6.37□□□□□ -1.39
NUP88-209ENST00000574855 SFSWAPQ12872 951 aaKnown RBP6.37□□□□□ -1.39
NUP88-209ENST00000574855 NEUROD1Q13562 356 aa6.37□□□□□ -1.39
NUP88-209ENST00000574855 ZNF468Q5VIY5 522 aaPredicted RBP6.37□□□□□ -1.39
NUP88-209ENST00000574855 KANK3Q6NY19 840 aa6.37□□□□□ -1.39
NUP88-209ENST00000574855 TMEM151AQ8N4L1 468 aa6.37□□□□□ -1.39
NUP88-209ENST00000574855 RRAGCQ9HB90 399 aa6.37□□□□□ -1.39
NUP88-209ENST00000574855 ZMIZ1Q9ULJ6 1067 aa6.37□□□□□ -1.39
NUP88-209ENST00000574855 KCNQ4P56696 695 aa6.36□□□□□ -1.39
NUP88-209ENST00000574855 ERICH6Q7L0X2 663 aa6.36□□□□□ -1.39
NUP88-209ENST00000574855 BTLAQ7Z6A9 289 aa6.36□□□□□ -1.39
NUP88-209ENST00000574855 KCNH4Q9UQ05 1017 aa6.36□□□□□ -1.39
NUP88-209ENST00000574855 PRMT3O60678 531 aa6.35□□□□□ -1.39
NUP88-209ENST00000574855 GDF11O95390 407 aa6.35□□□□□ -1.39
NUP88-209ENST00000574855 TYRO3Q06418 890 aa6.35□□□□□ -1.39
NUP88-209ENST00000574855 FAM69CQ0P6D2 419 aa6.35□□□□□ -1.39
NUP88-209ENST00000574855 IER5Q5VY09 327 aa6.35□□□□□ -1.39
NUP88-209ENST00000574855 SYT9Q86SS6 491 aa6.35□□□□□ -1.39
NUP88-209ENST00000574855 STK32AQ8WU08 396 aa6.35□□□□□ -1.39
NUP88-209ENST00000574855 BTBD6Q96KE9 485 aa6.35□□□□□ -1.39
NUP88-209ENST00000574855 PRIMPOLQ96LW4 560 aa6.35□□□□□ -1.39
NUP88-209ENST00000574855 KLF15Q9UIH9 416 aa6.35□□□□□ -1.39
NUP88-209ENST00000574855 TGFBR3LH3BV60 316 aa6.34□□□□□ -1.39
NUP88-209ENST00000574855 ALAS2P22557 587 aa6.34□□□□□ -1.39
NUP88-209ENST00000574855 GSK3AP49840 483 aa6.34□□□□□ -1.39
NUP88-209ENST00000574855 SPEM2Q0P670 501 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms